2024-12-07 04:38:19,746 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 04:38:20,060 Running on GPU
2024-12-07 04:38:23,632 Found 6 citations for tools or databases
2024-12-07 04:38:23,632 Query 1/1: MID2_UBXN1 (length 1032)
2024-12-07 04:38:23,928 Sleeping for 7s. Reason: PENDING
2024-12-07 04:38:31,198 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:38:41,464 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:38:49,728 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:38:57,987 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:39:06,244 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:39:16,496 Sleeping for 7s. Reason: RUNNING
2024-12-07 04:39:23,751 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:39:33,007 Sleeping for 7s. Reason: RUNNING
2024-12-07 04:39:40,262 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:39:49,518 Sleeping for 7s. Reason: RUNNING
2024-12-07 04:39:56,783 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:40:06,042 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:40:12,300 Sleeping for 7s. Reason: RUNNING
2024-12-07 04:40:19,556 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:40:28,806 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:40:38,066 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:40:46,324 Sleeping for 5s. Reason: RUNNING
2024-12-07 04:40:51,573 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:41:01,832 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:41:12,095 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:41:21,348 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:41:29,608 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:41:39,876 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:41:48,129 Sleeping for 7s. Reason: RUNNING
2024-12-07 04:41:55,381 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:42:04,643 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:42:10,901 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:42:20,157 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:42:30,066 Sleeping for 8s. Reason: PENDING
2024-12-07 04:42:38,325 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:42:48,583 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:42:54,836 Sleeping for 7s. Reason: RUNNING
2024-12-07 04:43:02,100 Sleeping for 5s. Reason: RUNNING
2024-12-07 04:43:07,355 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:43:13,615 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:43:19,869 Sleeping for 10s. Reason: RUNNING
2024-12-07 04:43:30,127 Sleeping for 5s. Reason: RUNNING
2024-12-07 04:43:35,383 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:43:41,644 Sleeping for 9s. Reason: RUNNING
2024-12-07 04:43:50,901 Sleeping for 6s. Reason: RUNNING
2024-12-07 04:43:57,156 Sleeping for 5s. Reason: RUNNING
2024-12-07 04:44:02,408 Sleeping for 8s. Reason: RUNNING
2024-12-07 04:44:14,581 Setting max_seq=508, max_extra_seq=2048
2024-12-07 04:46:26,992 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=65 pTM=0.38 ipTM=0.21
2024-12-07 04:46:46,982 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=66.3 pTM=0.396 ipTM=0.285 tol=11.4
2024-12-07 04:47:07,041 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=66.6 pTM=0.391 ipTM=0.265 tol=5.99
2024-12-07 04:47:27,162 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=66.1 pTM=0.384 ipTM=0.232 tol=4.44
2024-12-07 04:47:47,307 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=67.1 pTM=0.382 ipTM=0.206 tol=3.35
2024-12-07 04:48:07,479 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=67.2 pTM=0.384 ipTM=0.192 tol=3.3
2024-12-07 04:48:27,667 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=67.2 pTM=0.383 ipTM=0.184 tol=2.4
2024-12-07 04:48:47,881 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=67.5 pTM=0.378 ipTM=0.172 tol=2.66
2024-12-07 04:49:08,116 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=67.4 pTM=0.375 ipTM=0.17 tol=1.82
2024-12-07 04:49:28,360 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=67.6 pTM=0.38 ipTM=0.169 tol=2.32
2024-12-07 04:49:48,608 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=67.2 pTM=0.374 ipTM=0.166 tol=2.51
2024-12-07 04:50:08,857 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=67.1 pTM=0.37 ipTM=0.159 tol=2.13
2024-12-07 04:50:29,102 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=67.4 pTM=0.377 ipTM=0.162 tol=1.83
2024-12-07 04:50:49,327 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=67.5 pTM=0.38 ipTM=0.178 tol=1.87
2024-12-07 04:51:09,560 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=67.2 pTM=0.382 ipTM=0.207 tol=2.17
2024-12-07 04:51:29,792 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=67.3 pTM=0.381 ipTM=0.186 tol=1.57
2024-12-07 04:51:50,037 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=67.4 pTM=0.38 ipTM=0.183 tol=1.09
2024-12-07 04:52:10,275 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=67.4 pTM=0.382 ipTM=0.187 tol=0.983
2024-12-07 04:52:30,516 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=67.2 pTM=0.378 ipTM=0.191 tol=1.76
2024-12-07 04:52:50,742 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=67.1 pTM=0.381 ipTM=0.189 tol=1.35
2024-12-07 04:53:10,974 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=67.3 pTM=0.38 ipTM=0.187 tol=1.15
2024-12-07 04:53:31,207 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=67.3 pTM=0.379 ipTM=0.184 tol=0.976
2024-12-07 04:53:51,448 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=67.3 pTM=0.376 ipTM=0.188 tol=1.09
2024-12-07 04:54:11,697 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=67.2 pTM=0.375 ipTM=0.193 tol=0.928
2024-12-07 04:54:31,976 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=67.1 pTM=0.37 ipTM=0.197 tol=1.03
2024-12-07 04:54:52,257 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=66.9 pTM=0.373 ipTM=0.189 tol=1.05
2024-12-07 04:55:12,531 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=67.1 pTM=0.376 ipTM=0.195 tol=0.918
2024-12-07 04:55:32,820 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=67.2 pTM=0.373 ipTM=0.186 tol=0.834
2024-12-07 04:55:53,108 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=67 pTM=0.371 ipTM=0.186 tol=0.793
2024-12-07 04:56:13,383 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=67.2 pTM=0.375 ipTM=0.194 tol=1.02
2024-12-07 04:56:33,653 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=67 pTM=0.371 ipTM=0.194 tol=1.46
2024-12-07 04:56:33,654 alphafold2_multimer_v3_model_1_seed_000 took 733.9s (30 recycles)
2024-12-07 04:56:54,535 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=64.2 pTM=0.404 ipTM=0.241
2024-12-07 04:57:14,770 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=66.3 pTM=0.431 ipTM=0.222 tol=6.42
2024-12-07 04:57:35,014 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=67.4 pTM=0.434 ipTM=0.218 tol=3.91
2024-12-07 04:57:55,256 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=68 pTM=0.433 ipTM=0.271 tol=2
2024-12-07 04:58:15,516 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=68 pTM=0.432 ipTM=0.253 tol=2.15
2024-12-07 04:58:35,773 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=68 pTM=0.431 ipTM=0.252 tol=2.95
2024-12-07 04:58:55,994 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=68.2 pTM=0.432 ipTM=0.254 tol=1.49
2024-12-07 04:59:16,241 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=68.2 pTM=0.429 ipTM=0.245 tol=2.05
2024-12-07 04:59:36,513 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=68.2 pTM=0.427 ipTM=0.247 tol=1.76
2024-12-07 04:59:56,759 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=68.7 pTM=0.432 ipTM=0.259 tol=0.859
2024-12-07 05:00:17,014 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=68.2 pTM=0.427 ipTM=0.255 tol=1.24
2024-12-07 05:00:37,259 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=68.2 pTM=0.426 ipTM=0.251 tol=1.74
2024-12-07 05:00:57,502 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=68 pTM=0.431 ipTM=0.256 tol=3.78
2024-12-07 05:01:17,756 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=68.4 pTM=0.43 ipTM=0.262 tol=2.4
2024-12-07 05:01:37,993 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=68.3 pTM=0.431 ipTM=0.258 tol=2.59
2024-12-07 05:01:58,251 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=68 pTM=0.429 ipTM=0.252 tol=2.81
2024-12-07 05:02:18,500 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=68.1 pTM=0.431 ipTM=0.259 tol=2.62
2024-12-07 05:02:38,735 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=68.1 pTM=0.433 ipTM=0.258 tol=2.56
2024-12-07 05:02:58,969 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=68 pTM=0.434 ipTM=0.26 tol=3.09
2024-12-07 05:03:19,217 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=67.8 pTM=0.432 ipTM=0.255 tol=2.81
2024-12-07 05:03:39,473 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=67.9 pTM=0.433 ipTM=0.268 tol=2.67
2024-12-07 05:03:59,729 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=67.9 pTM=0.43 ipTM=0.255 tol=2.78
2024-12-07 05:04:19,967 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=68.1 pTM=0.431 ipTM=0.253 tol=1.86
2024-12-07 05:04:40,211 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=68.2 pTM=0.428 ipTM=0.256 tol=1.87
2024-12-07 05:05:00,475 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=68.1 pTM=0.426 ipTM=0.264 tol=1.86
2024-12-07 05:05:20,740 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=67.9 pTM=0.427 ipTM=0.258 tol=1.88
2024-12-07 05:05:41,013 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=68.2 pTM=0.43 ipTM=0.258 tol=2.22
2024-12-07 05:06:01,283 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=68.2 pTM=0.43 ipTM=0.255 tol=1.76
2024-12-07 05:06:21,548 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=68.2 pTM=0.428 ipTM=0.266 tol=1.52
2024-12-07 05:06:41,813 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=68.3 pTM=0.431 ipTM=0.256 tol=2.19
2024-12-07 05:07:02,089 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=67.9 pTM=0.427 ipTM=0.257 tol=2.39
2024-12-07 05:07:02,090 alphafold2_multimer_v3_model_2_seed_000 took 627.8s (30 recycles)
2024-12-07 05:07:23,102 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.2 pTM=0.384 ipTM=0.127
2024-12-07 05:07:43,383 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.8 pTM=0.409 ipTM=0.175 tol=24.4
2024-12-07 05:08:03,667 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.9 pTM=0.427 ipTM=0.212 tol=7.47
2024-12-07 05:08:23,902 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=66.7 pTM=0.435 ipTM=0.264 tol=14.4
2024-12-07 05:08:44,132 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=67.4 pTM=0.437 ipTM=0.269 tol=3.14
2024-12-07 05:09:04,357 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.6 pTM=0.441 ipTM=0.269 tol=1.64
2024-12-07 05:09:24,581 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.8 pTM=0.442 ipTM=0.256 tol=0.891
2024-12-07 05:09:44,803 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.4 pTM=0.44 ipTM=0.255 tol=2.15
2024-12-07 05:10:05,021 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.7 pTM=0.442 ipTM=0.263 tol=0.901
2024-12-07 05:10:25,275 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=67.6 pTM=0.444 ipTM=0.274 tol=2.42
2024-12-07 05:10:45,496 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=67.4 pTM=0.44 ipTM=0.258 tol=1.45
2024-12-07 05:11:05,707 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=67.1 pTM=0.436 ipTM=0.246 tol=2.02
2024-12-07 05:11:25,916 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.2 pTM=0.44 ipTM=0.244 tol=0.984
2024-12-07 05:11:46,108 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=67.5 pTM=0.441 ipTM=0.274 tol=1.58
2024-12-07 05:12:06,296 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=67.2 pTM=0.439 ipTM=0.265 tol=1.33
2024-12-07 05:12:26,498 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=67.1 pTM=0.44 ipTM=0.258 tol=1.23
2024-12-07 05:12:46,696 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=67.2 pTM=0.44 ipTM=0.257 tol=0.859
2024-12-07 05:13:06,904 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67.4 pTM=0.443 ipTM=0.275 tol=1.14
2024-12-07 05:13:27,117 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=67 pTM=0.438 ipTM=0.249 tol=1.32
2024-12-07 05:13:47,318 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=66.9 pTM=0.441 ipTM=0.248 tol=0.938
2024-12-07 05:14:07,521 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=67 pTM=0.436 ipTM=0.202 tol=1.57
2024-12-07 05:14:27,710 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=66.9 pTM=0.433 ipTM=0.192 tol=1.18
2024-12-07 05:14:47,916 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=66.7 pTM=0.432 ipTM=0.194 tol=1.13
2024-12-07 05:15:08,127 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.8 pTM=0.432 ipTM=0.189 tol=1.14
2024-12-07 05:15:28,331 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=66.6 pTM=0.429 ipTM=0.187 tol=0.801
2024-12-07 05:15:48,556 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=66.6 pTM=0.426 ipTM=0.198 tol=2.65
2024-12-07 05:16:08,778 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67 pTM=0.426 ipTM=0.194 tol=4.1
2024-12-07 05:16:29,010 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.8 pTM=0.422 ipTM=0.193 tol=4.14
2024-12-07 05:16:49,225 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=66.4 pTM=0.42 ipTM=0.195 tol=5.04
2024-12-07 05:17:09,445 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67 pTM=0.424 ipTM=0.191 tol=2.01
2024-12-07 05:17:29,646 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=66.6 pTM=0.418 ipTM=0.187 tol=1.44
2024-12-07 05:17:29,646 alphafold2_multimer_v3_model_3_seed_000 took 626.9s (30 recycles)
2024-12-07 05:17:50,675 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=59.3 pTM=0.361 ipTM=0.182
2024-12-07 05:18:10,951 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=63.5 pTM=0.405 ipTM=0.26 tol=26.3
2024-12-07 05:18:31,198 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=65.8 pTM=0.422 ipTM=0.262 tol=5.95
2024-12-07 05:18:51,450 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66 pTM=0.424 ipTM=0.211 tol=2.44
2024-12-07 05:19:11,714 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=65.9 pTM=0.423 ipTM=0.201 tol=3.56
2024-12-07 05:19:31,968 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=66 pTM=0.423 ipTM=0.201 tol=2.79
2024-12-07 05:19:52,234 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.1 pTM=0.424 ipTM=0.188 tol=1.58
2024-12-07 05:20:12,471 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=66.2 pTM=0.426 ipTM=0.202 tol=2.93
2024-12-07 05:20:32,710 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=66.2 pTM=0.426 ipTM=0.193 tol=3.11
2024-12-07 05:20:52,953 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=66.4 pTM=0.43 ipTM=0.21 tol=1.91
2024-12-07 05:21:13,228 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=65.8 pTM=0.419 ipTM=0.185 tol=3.41
2024-12-07 05:21:33,486 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=65.9 pTM=0.421 ipTM=0.194 tol=3.23
2024-12-07 05:21:53,735 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=66.1 pTM=0.425 ipTM=0.192 tol=0.904
2024-12-07 05:22:13,969 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=66.1 pTM=0.427 ipTM=0.195 tol=1.36
2024-12-07 05:22:34,230 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=65.9 pTM=0.419 ipTM=0.177 tol=1.45
2024-12-07 05:22:54,478 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=65.9 pTM=0.422 ipTM=0.191 tol=2.55
2024-12-07 05:23:14,737 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=66.1 pTM=0.417 ipTM=0.178 tol=2.49
2024-12-07 05:23:35,001 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=66.1 pTM=0.418 ipTM=0.178 tol=1.44
2024-12-07 05:23:55,265 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=65.9 pTM=0.417 ipTM=0.177 tol=1.43
2024-12-07 05:24:15,521 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.9 pTM=0.421 ipTM=0.178 tol=1.38
2024-12-07 05:24:35,790 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=66.2 pTM=0.419 ipTM=0.177 tol=1.83
2024-12-07 05:24:56,062 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=66.2 pTM=0.418 ipTM=0.182 tol=1.91
2024-12-07 05:25:16,329 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=66.2 pTM=0.417 ipTM=0.179 tol=1.62
2024-12-07 05:25:36,581 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=66.2 pTM=0.416 ipTM=0.174 tol=2.53
2024-12-07 05:25:56,847 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=65.9 pTM=0.411 ipTM=0.17 tol=2.14
2024-12-07 05:26:17,148 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=65.9 pTM=0.415 ipTM=0.177 tol=2.05
2024-12-07 05:26:37,425 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=66.2 pTM=0.418 ipTM=0.18 tol=1.77
2024-12-07 05:26:57,718 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=66.2 pTM=0.411 ipTM=0.165 tol=2.33
2024-12-07 05:27:18,011 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65.9 pTM=0.407 ipTM=0.145 tol=3.77
2024-12-07 05:27:38,309 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=66.3 pTM=0.412 ipTM=0.168 tol=12.8
2024-12-07 05:27:58,599 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=66.1 pTM=0.406 ipTM=0.148 tol=6.98
2024-12-07 05:27:58,600 alphafold2_multimer_v3_model_4_seed_000 took 628.3s (30 recycles)
2024-12-07 05:28:19,612 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=64.7 pTM=0.387 ipTM=0.153
2024-12-07 05:28:39,934 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=65.8 pTM=0.416 ipTM=0.275 tol=9.96
2024-12-07 05:29:00,244 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66 pTM=0.414 ipTM=0.262 tol=4.81
2024-12-07 05:29:20,537 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.1 pTM=0.412 ipTM=0.238 tol=2.35
2024-12-07 05:29:40,829 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65.6 pTM=0.41 ipTM=0.217 tol=9.93
2024-12-07 05:30:01,094 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=66.2 pTM=0.412 ipTM=0.219 tol=4.43
2024-12-07 05:30:21,373 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.3 pTM=0.413 ipTM=0.218 tol=1.46
2024-12-07 05:30:41,635 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=66.4 pTM=0.409 ipTM=0.206 tol=1.76
2024-12-07 05:31:01,889 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.6 pTM=0.409 ipTM=0.216 tol=1.95
2024-12-07 05:31:22,151 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=66.3 pTM=0.411 ipTM=0.207 tol=1.94
2024-12-07 05:31:42,440 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=65.7 pTM=0.409 ipTM=0.206 tol=1.57
2024-12-07 05:32:02,715 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.1 pTM=0.406 ipTM=0.199 tol=2.82
2024-12-07 05:32:22,964 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66.3 pTM=0.417 ipTM=0.215 tol=2.16
2024-12-07 05:32:43,219 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=66.4 pTM=0.417 ipTM=0.196 tol=2.18
2024-12-07 05:33:03,461 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=66.3 pTM=0.418 ipTM=0.195 tol=1.94
2024-12-07 05:33:23,721 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=66.2 pTM=0.419 ipTM=0.196 tol=1.2
2024-12-07 05:33:43,975 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=66.7 pTM=0.422 ipTM=0.193 tol=1.72
2024-12-07 05:34:04,234 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=66.2 pTM=0.421 ipTM=0.185 tol=2.18
2024-12-07 05:34:24,503 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=66.1 pTM=0.422 ipTM=0.19 tol=1.61
2024-12-07 05:34:44,756 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=66.1 pTM=0.423 ipTM=0.193 tol=1.66
2024-12-07 05:35:05,015 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=65.9 pTM=0.423 ipTM=0.194 tol=1.55
2024-12-07 05:35:25,273 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=66.2 pTM=0.421 ipTM=0.192 tol=1.61
2024-12-07 05:35:45,542 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=66.2 pTM=0.426 ipTM=0.213 tol=2.2
2024-12-07 05:36:05,813 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66.3 pTM=0.423 ipTM=0.194 tol=2.07
2024-12-07 05:36:26,092 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=65.4 pTM=0.426 ipTM=0.205 tol=3.48
2024-12-07 05:36:46,356 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=66.4 pTM=0.425 ipTM=0.2 tol=4.53
2024-12-07 05:37:06,633 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=65.7 pTM=0.427 ipTM=0.198 tol=2.92
2024-12-07 05:37:26,928 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66.2 pTM=0.423 ipTM=0.186 tol=3.83
2024-12-07 05:37:47,228 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.8 pTM=0.424 ipTM=0.197 tol=2.58
2024-12-07 05:38:07,514 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=66.7 pTM=0.425 ipTM=0.189 tol=3.38
2024-12-07 05:38:27,779 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=66.6 pTM=0.425 ipTM=0.203 tol=2.27
2024-12-07 05:38:27,780 alphafold2_multimer_v3_model_5_seed_000 took 628.5s (30 recycles)
2024-12-07 05:38:28,442 reranking models by 'multimer' metric
2024-12-07 05:38:31,904 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 05:39:38,205 Relaxation took 69.8s
2024-12-07 05:39:38,205 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=67.9 pTM=0.427 ipTM=0.257
2024-12-07 05:40:49,135 Relaxation took 70.9s
2024-12-07 05:40:49,136 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=66.6 pTM=0.425 ipTM=0.203
2024-12-07 05:41:48,890 Relaxation took 59.8s
2024-12-07 05:41:48,890 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=66.6 pTM=0.418 ipTM=0.187
2024-12-07 05:43:20,296 Relaxation took 91.4s
2024-12-07 05:43:20,297 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67 pTM=0.371 ipTM=0.194
2024-12-07 05:44:24,999 Relaxation took 64.7s
2024-12-07 05:44:24,999 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=66.1 pTM=0.406 ipTM=0.148
2024-12-07 05:44:27,141 Done