2024-12-07 05:30:15,982 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 05:30:16,297 Running on GPU
2024-12-07 05:30:19,694 Found 6 citations for tools or databases
2024-12-07 05:30:19,695 Query 1/1: MKRN2_APOBEC3D (length 802)
2024-12-07 05:30:19,981 Sleeping for 7s. Reason: PENDING
2024-12-07 05:30:27,250 Sleeping for 9s. Reason: RUNNING
2024-12-07 05:30:36,510 Sleeping for 6s. Reason: RUNNING
2024-12-07 05:30:42,765 Sleeping for 8s. Reason: RUNNING
2024-12-07 05:30:51,030 Sleeping for 7s. Reason: RUNNING
2024-12-07 05:30:58,296 Sleeping for 7s. Reason: RUNNING
2024-12-07 05:31:05,552 Sleeping for 7s. Reason: RUNNING
2024-12-07 05:31:12,812 Sleeping for 6s. Reason: RUNNING
2024-12-07 05:31:19,077 Sleeping for 8s. Reason: RUNNING
2024-12-07 05:31:27,334 Sleeping for 7s. Reason: RUNNING
2024-12-07 05:31:34,597 Sleeping for 10s. Reason: RUNNING
2024-12-07 05:31:44,856 Sleeping for 8s. Reason: RUNNING
2024-12-07 05:31:54,575 Sleeping for 9s. Reason: PENDING
2024-12-07 05:32:03,838 Sleeping for 6s. Reason: RUNNING
2024-12-07 05:32:10,092 Sleeping for 6s. Reason: RUNNING
2024-12-07 05:32:16,349 Sleeping for 9s. Reason: RUNNING
2024-12-07 05:32:25,624 Sleeping for 9s. Reason: RUNNING
2024-12-07 05:32:36,803 Setting max_seq=508, max_extra_seq=2048
2024-12-07 05:35:15,475 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61 pTM=0.366 ipTM=0.19
2024-12-07 05:35:28,426 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=61.2 pTM=0.365 ipTM=0.219 tol=11.6
2024-12-07 05:35:41,388 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=61.5 pTM=0.376 ipTM=0.266 tol=4.85
2024-12-07 05:35:54,382 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=61.5 pTM=0.375 ipTM=0.197 tol=3.37
2024-12-07 05:36:07,381 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=61.5 pTM=0.381 ipTM=0.176 tol=3.19
2024-12-07 05:36:20,393 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61.7 pTM=0.376 ipTM=0.242 tol=2.72
2024-12-07 05:36:33,425 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=61.7 pTM=0.379 ipTM=0.21 tol=2.67
2024-12-07 05:36:46,462 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61.9 pTM=0.375 ipTM=0.178 tol=3.2
2024-12-07 05:36:59,499 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=62 pTM=0.379 ipTM=0.206 tol=1.38
2024-12-07 05:37:12,541 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=62.1 pTM=0.376 ipTM=0.212 tol=1.98
2024-12-07 05:37:25,584 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=62.3 pTM=0.384 ipTM=0.24 tol=1.78
2024-12-07 05:37:38,648 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=61.9 pTM=0.375 ipTM=0.211 tol=1.47
2024-12-07 05:37:51,696 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=62.7 pTM=0.388 ipTM=0.198 tol=2.09
2024-12-07 05:38:04,757 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=62.3 pTM=0.38 ipTM=0.271 tol=3.3
2024-12-07 05:38:17,825 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=62.1 pTM=0.383 ipTM=0.228 tol=2.15
2024-12-07 05:38:30,899 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.2 pTM=0.376 ipTM=0.209 tol=2.71
2024-12-07 05:38:43,967 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=62.4 pTM=0.386 ipTM=0.258 tol=2.62
2024-12-07 05:38:57,050 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=62.2 pTM=0.374 ipTM=0.222 tol=1.56
2024-12-07 05:39:10,117 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=62.3 pTM=0.377 ipTM=0.203 tol=2.34
2024-12-07 05:39:23,206 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=62 pTM=0.376 ipTM=0.254 tol=2.48
2024-12-07 05:39:36,294 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=62.8 pTM=0.391 ipTM=0.315 tol=1.73
2024-12-07 05:39:49,377 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=62.1 pTM=0.373 ipTM=0.201 tol=2.02
2024-12-07 05:40:02,459 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=62.4 pTM=0.379 ipTM=0.202 tol=1.95
2024-12-07 05:40:15,546 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=62.2 pTM=0.38 ipTM=0.255 tol=2.05
2024-12-07 05:40:28,623 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=62.3 pTM=0.383 ipTM=0.224 tol=1.36
2024-12-07 05:40:41,706 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=62.2 pTM=0.375 ipTM=0.214 tol=2.18
2024-12-07 05:40:54,787 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=62.2 pTM=0.39 ipTM=0.216 tol=2.05
2024-12-07 05:41:07,876 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=62.4 pTM=0.378 ipTM=0.235 tol=1.75
2024-12-07 05:41:20,965 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62 pTM=0.384 ipTM=0.206 tol=1.81
2024-12-07 05:41:34,054 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=62.3 pTM=0.377 ipTM=0.177 tol=2.82
2024-12-07 05:41:47,141 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=62.5 pTM=0.384 ipTM=0.202 tol=3.26
2024-12-07 05:41:47,142 alphafold2_multimer_v3_model_1_seed_000 took 545.5s (30 recycles)
2024-12-07 05:42:00,665 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=62.3 pTM=0.408 ipTM=0.187
2024-12-07 05:42:13,781 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=63.1 pTM=0.387 ipTM=0.408 tol=11.1
2024-12-07 05:42:26,896 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=62.3 pTM=0.362 ipTM=0.201 tol=14.9
2024-12-07 05:42:40,015 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=61.9 pTM=0.358 ipTM=0.15 tol=5.87
2024-12-07 05:42:53,119 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=62.5 pTM=0.369 ipTM=0.171 tol=7.54
2024-12-07 05:43:06,206 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62.3 pTM=0.363 ipTM=0.155 tol=3.78
2024-12-07 05:43:19,303 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=63.1 pTM=0.378 ipTM=0.195 tol=2.47
2024-12-07 05:43:32,406 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=62.8 pTM=0.364 ipTM=0.203 tol=2.68
2024-12-07 05:43:45,514 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=63.2 pTM=0.365 ipTM=0.168 tol=3
2024-12-07 05:43:58,598 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=63.8 pTM=0.399 ipTM=0.201 tol=4.38
2024-12-07 05:44:11,681 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=63.4 pTM=0.397 ipTM=0.227 tol=2.73
2024-12-07 05:44:24,766 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.3 pTM=0.401 ipTM=0.195 tol=2.2
2024-12-07 05:44:37,855 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=63.4 pTM=0.411 ipTM=0.194 tol=2.04
2024-12-07 05:44:50,936 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=63.7 pTM=0.418 ipTM=0.212 tol=2.16
2024-12-07 05:45:04,017 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.5 pTM=0.414 ipTM=0.211 tol=1.31
2024-12-07 05:45:17,113 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=63.3 pTM=0.421 ipTM=0.268 tol=4.22
2024-12-07 05:45:30,220 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=63.9 pTM=0.423 ipTM=0.167 tol=3.3
2024-12-07 05:45:43,303 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63.9 pTM=0.426 ipTM=0.178 tol=2.21
2024-12-07 05:45:56,395 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=64 pTM=0.431 ipTM=0.241 tol=2.35
2024-12-07 05:46:09,492 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.5 pTM=0.421 ipTM=0.221 tol=2.21
2024-12-07 05:46:22,599 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63.6 pTM=0.418 ipTM=0.161 tol=1.94
2024-12-07 05:46:35,682 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=64 pTM=0.424 ipTM=0.174 tol=2.45
2024-12-07 05:46:48,762 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=63.8 pTM=0.424 ipTM=0.187 tol=2.07
2024-12-07 05:47:01,839 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63.5 pTM=0.427 ipTM=0.213 tol=2.2
2024-12-07 05:47:14,927 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=63.8 pTM=0.425 ipTM=0.207 tol=3.63
2024-12-07 05:47:28,008 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=64.2 pTM=0.433 ipTM=0.181 tol=3.49
2024-12-07 05:47:41,079 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=64.4 pTM=0.438 ipTM=0.21 tol=1.46
2024-12-07 05:47:54,148 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=63.8 pTM=0.423 ipTM=0.233 tol=2.81
2024-12-07 05:48:07,231 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63.3 pTM=0.42 ipTM=0.229 tol=2.12
2024-12-07 05:48:20,314 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.7 pTM=0.423 ipTM=0.208 tol=2.18
2024-12-07 05:48:33,396 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63.8 pTM=0.425 ipTM=0.214 tol=1.54
2024-12-07 05:48:33,396 alphafold2_multimer_v3_model_2_seed_000 took 405.8s (30 recycles)
2024-12-07 05:48:46,958 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=60.8 pTM=0.358 ipTM=0.138
2024-12-07 05:49:00,075 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=60.1 pTM=0.38 ipTM=0.132 tol=13.4
2024-12-07 05:49:13,210 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=60.6 pTM=0.379 ipTM=0.137 tol=4.59
2024-12-07 05:49:26,315 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=59.9 pTM=0.385 ipTM=0.143 tol=4.94
2024-12-07 05:49:39,446 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=60.2 pTM=0.393 ipTM=0.145 tol=3.73
2024-12-07 05:49:52,552 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60 pTM=0.391 ipTM=0.144 tol=4.54
2024-12-07 05:50:05,639 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.5 pTM=0.395 ipTM=0.146 tol=2.73
2024-12-07 05:50:18,729 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.1 pTM=0.391 ipTM=0.147 tol=4.51
2024-12-07 05:50:31,835 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.4 pTM=0.392 ipTM=0.147 tol=4.05
2024-12-07 05:50:44,950 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=60.3 pTM=0.391 ipTM=0.154 tol=3.8
2024-12-07 05:50:58,056 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.4 pTM=0.397 ipTM=0.153 tol=5.7
2024-12-07 05:51:11,164 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60 pTM=0.401 ipTM=0.173 tol=2.28
2024-12-07 05:51:24,272 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.3 pTM=0.41 ipTM=0.208 tol=2.41
2024-12-07 05:51:37,351 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.5 pTM=0.411 ipTM=0.207 tol=1.72
2024-12-07 05:51:50,451 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=60.6 pTM=0.414 ipTM=0.176 tol=2.37
2024-12-07 05:52:03,542 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=60.4 pTM=0.419 ipTM=0.284 tol=2.49
2024-12-07 05:52:16,647 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.5 pTM=0.417 ipTM=0.22 tol=1.93
2024-12-07 05:52:29,727 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.4 pTM=0.416 ipTM=0.195 tol=1.67
2024-12-07 05:52:42,848 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.8 pTM=0.417 ipTM=0.267 tol=1.88
2024-12-07 05:52:55,958 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=60.7 pTM=0.439 ipTM=0.22 tol=1.7
2024-12-07 05:53:09,062 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=61.5 pTM=0.455 ipTM=0.217 tol=1.94
2024-12-07 05:53:22,167 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=61 pTM=0.455 ipTM=0.215 tol=1.63
2024-12-07 05:53:35,276 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=61.4 pTM=0.462 ipTM=0.199 tol=1.84
2024-12-07 05:53:48,377 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61.4 pTM=0.472 ipTM=0.25 tol=1.76
2024-12-07 05:54:01,470 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=61.2 pTM=0.469 ipTM=0.246 tol=1.84
2024-12-07 05:54:14,569 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=61.2 pTM=0.47 ipTM=0.239 tol=1.62
2024-12-07 05:54:27,665 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=61.3 pTM=0.473 ipTM=0.218 tol=1.44
2024-12-07 05:54:40,764 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=61.1 pTM=0.471 ipTM=0.195 tol=1.72
2024-12-07 05:54:53,859 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=61.3 pTM=0.48 ipTM=0.28 tol=1.89
2024-12-07 05:55:06,959 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=61.1 pTM=0.474 ipTM=0.226 tol=1.24
2024-12-07 05:55:20,057 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=61.7 pTM=0.474 ipTM=0.19 tol=1.5
2024-12-07 05:55:20,057 alphafold2_multimer_v3_model_3_seed_000 took 406.2s (30 recycles)
2024-12-07 05:55:33,591 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=61 pTM=0.476 ipTM=0.486
2024-12-07 05:55:46,742 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=58.7 pTM=0.36 ipTM=0.141 tol=16.6
2024-12-07 05:55:59,863 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58.9 pTM=0.359 ipTM=0.146 tol=6.79
2024-12-07 05:56:12,978 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=59.1 pTM=0.375 ipTM=0.143 tol=8.23
2024-12-07 05:56:26,085 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=58.9 pTM=0.384 ipTM=0.156 tol=6.9
2024-12-07 05:56:39,173 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=58.6 pTM=0.395 ipTM=0.184 tol=7.59
2024-12-07 05:56:52,284 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=59 pTM=0.399 ipTM=0.152 tol=9.2
2024-12-07 05:57:05,392 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=58.9 pTM=0.404 ipTM=0.145 tol=5.14
2024-12-07 05:57:18,496 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=59 pTM=0.414 ipTM=0.143 tol=3.82
2024-12-07 05:57:31,588 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=59.1 pTM=0.411 ipTM=0.151 tol=5.07
2024-12-07 05:57:44,676 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=58.8 pTM=0.421 ipTM=0.156 tol=7.56
2024-12-07 05:57:57,765 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=58.9 pTM=0.415 ipTM=0.162 tol=8.14
2024-12-07 05:58:10,857 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=58.5 pTM=0.418 ipTM=0.199 tol=7.57
2024-12-07 05:58:23,949 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=58.6 pTM=0.414 ipTM=0.16 tol=9.11
2024-12-07 05:58:37,032 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=58.6 pTM=0.434 ipTM=0.217 tol=6.61
2024-12-07 05:58:50,127 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=58.4 pTM=0.404 ipTM=0.153 tol=5.89
2024-12-07 05:59:03,214 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=58.3 pTM=0.411 ipTM=0.162 tol=3.27
2024-12-07 05:59:16,296 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=58.3 pTM=0.404 ipTM=0.152 tol=4.59
2024-12-07 05:59:29,411 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=58.6 pTM=0.417 ipTM=0.168 tol=3.96
2024-12-07 05:59:42,521 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=58.4 pTM=0.41 ipTM=0.15 tol=5.22
2024-12-07 05:59:55,608 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=58.8 pTM=0.42 ipTM=0.197 tol=5.62
2024-12-07 06:00:08,709 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=58.9 pTM=0.418 ipTM=0.149 tol=5.36
2024-12-07 06:00:21,798 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=58.8 pTM=0.418 ipTM=0.153 tol=10.2
2024-12-07 06:00:34,885 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=58.8 pTM=0.411 ipTM=0.146 tol=7.55
2024-12-07 06:00:47,987 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=58.9 pTM=0.405 ipTM=0.159 tol=7.06
2024-12-07 06:01:01,060 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=58.8 pTM=0.432 ipTM=0.28 tol=10.6
2024-12-07 06:01:14,146 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=58.9 pTM=0.421 ipTM=0.152 tol=8.11
2024-12-07 06:01:27,235 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=58.2 pTM=0.424 ipTM=0.244 tol=6.05
2024-12-07 06:01:40,335 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=58.5 pTM=0.407 ipTM=0.151 tol=7.32
2024-12-07 06:01:53,410 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=58.7 pTM=0.413 ipTM=0.155 tol=5.38
2024-12-07 06:02:06,517 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=58.7 pTM=0.412 ipTM=0.154 tol=5.03
2024-12-07 06:02:06,518 alphafold2_multimer_v3_model_4_seed_000 took 406.0s (30 recycles)
2024-12-07 06:02:20,078 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=61.7 pTM=0.374 ipTM=0.188
2024-12-07 06:02:33,206 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=60.9 pTM=0.383 ipTM=0.164 tol=9.35
2024-12-07 06:02:46,346 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.2 pTM=0.371 ipTM=0.148 tol=7.63
2024-12-07 06:02:59,484 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=61.6 pTM=0.388 ipTM=0.151 tol=5.79
2024-12-07 06:03:12,606 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=61.4 pTM=0.384 ipTM=0.15 tol=7.07
2024-12-07 06:03:25,729 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61.7 pTM=0.385 ipTM=0.147 tol=2.6
2024-12-07 06:03:38,835 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=61.4 pTM=0.391 ipTM=0.144 tol=2.58
2024-12-07 06:03:51,933 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=62 pTM=0.395 ipTM=0.147 tol=2.74
2024-12-07 06:04:05,041 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=61.7 pTM=0.394 ipTM=0.178 tol=6.05
2024-12-07 06:04:18,140 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.9 pTM=0.398 ipTM=0.167 tol=3.68
2024-12-07 06:04:31,247 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=61.6 pTM=0.398 ipTM=0.178 tol=3.72
2024-12-07 06:04:44,355 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=61.8 pTM=0.405 ipTM=0.173 tol=5.59
2024-12-07 06:04:57,458 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62 pTM=0.405 ipTM=0.152 tol=3.98
2024-12-07 06:05:10,548 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.4 pTM=0.4 ipTM=0.151 tol=3.66
2024-12-07 06:05:23,636 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.1 pTM=0.397 ipTM=0.152 tol=2.15
2024-12-07 06:05:36,726 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62 pTM=0.398 ipTM=0.161 tol=4.46
2024-12-07 06:05:49,816 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62 pTM=0.4 ipTM=0.154 tol=2.69
2024-12-07 06:06:02,917 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.1 pTM=0.397 ipTM=0.168 tol=3.28
2024-12-07 06:06:16,026 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=61.9 pTM=0.397 ipTM=0.175 tol=2.54
2024-12-07 06:06:29,160 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61.9 pTM=0.396 ipTM=0.173 tol=2.71
2024-12-07 06:06:42,271 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.3 pTM=0.406 ipTM=0.188 tol=2.54
2024-12-07 06:06:55,378 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62 pTM=0.394 ipTM=0.163 tol=1.95
2024-12-07 06:07:08,491 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62 pTM=0.396 ipTM=0.171 tol=2.9
2024-12-07 06:07:21,609 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=61.9 pTM=0.397 ipTM=0.179 tol=2.8
2024-12-07 06:07:34,728 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=62.3 pTM=0.405 ipTM=0.156 tol=1.69
2024-12-07 06:07:47,822 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.1 pTM=0.401 ipTM=0.162 tol=2.19
2024-12-07 06:08:00,925 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.5 pTM=0.407 ipTM=0.162 tol=2.52
2024-12-07 06:08:14,021 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=61.8 pTM=0.396 ipTM=0.152 tol=3.19
2024-12-07 06:08:27,121 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=61.8 pTM=0.405 ipTM=0.153 tol=2.01
2024-12-07 06:08:40,218 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62 pTM=0.397 ipTM=0.15 tol=2.56
2024-12-07 06:08:53,317 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=61.9 pTM=0.398 ipTM=0.156 tol=1.41
2024-12-07 06:08:53,317 alphafold2_multimer_v3_model_5_seed_000 took 406.4s (30 recycles)
2024-12-07 06:08:53,727 reranking models by 'multimer' metric
2024-12-07 06:08:54,867 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 06:10:01,401 Relaxation took 67.7s
2024-12-07 06:10:01,401 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63.8 pTM=0.425 ipTM=0.214
2024-12-07 06:11:11,086 Relaxation took 69.7s
2024-12-07 06:11:11,086 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=61.7 pTM=0.474 ipTM=0.19
2024-12-07 06:12:21,490 Relaxation took 70.4s
2024-12-07 06:12:21,491 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=62.5 pTM=0.384 ipTM=0.202
2024-12-07 06:13:19,718 Relaxation took 58.2s
2024-12-07 06:13:19,718 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=58.7 pTM=0.412 ipTM=0.154
2024-12-07 06:14:41,966 Relaxation took 82.2s
2024-12-07 06:14:41,966 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=61.9 pTM=0.398 ipTM=0.156
2024-12-07 06:14:43,441 Done