2024-12-07 06:15:17,168 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 06:15:17,643 Running on GPU
2024-12-07 06:15:21,142 Found 6 citations for tools or databases
2024-12-07 06:15:21,142 Query 1/1: MKRN2_LARP4B (length 1154)
2024-12-07 06:15:21,430 Sleeping for 6s. Reason: PENDING
2024-12-07 06:15:27,694 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:15:32,947 Sleeping for 9s. Reason: RUNNING
2024-12-07 06:15:42,206 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:15:49,459 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:15:54,709 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:16:01,963 Sleeping for 8s. Reason: RUNNING
2024-12-07 06:16:10,218 Sleeping for 8s. Reason: RUNNING
2024-12-07 06:16:18,472 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:16:23,726 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:16:33,996 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:16:41,256 Sleeping for 8s. Reason: RUNNING
2024-12-07 06:16:49,521 Sleeping for 9s. Reason: RUNNING
2024-12-07 06:16:58,780 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:17:06,649 Sleeping for 5s. Reason: PENDING
2024-12-07 06:17:11,913 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:17:19,169 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:17:24,429 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:17:30,689 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:17:36,950 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:17:43,211 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:17:50,464 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:17:56,726 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:18:01,979 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:18:07,240 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:18:20,446 Setting max_seq=508, max_extra_seq=2048
2024-12-07 06:21:22,089 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=38 pTM=0.277 ipTM=0.232
2024-12-07 06:21:53,367 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=37.5 pTM=0.268 ipTM=0.182 tol=24.9
2024-12-07 06:22:24,820 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=38.5 pTM=0.262 ipTM=0.187 tol=16.8
2024-12-07 06:22:56,392 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=38.2 pTM=0.267 ipTM=0.188 tol=10
2024-12-07 06:23:28,074 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=38.6 pTM=0.264 ipTM=0.175 tol=10.5
2024-12-07 06:23:59,746 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=38.1 pTM=0.257 ipTM=0.17 tol=6.65
2024-12-07 06:24:31,466 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=38.6 pTM=0.259 ipTM=0.176 tol=3.38
2024-12-07 06:25:03,260 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=38.6 pTM=0.26 ipTM=0.181 tol=7.7
2024-12-07 06:25:35,037 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=38.4 pTM=0.258 ipTM=0.172 tol=3.82
2024-12-07 06:26:06,832 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=38.4 pTM=0.262 ipTM=0.177 tol=6.93
2024-12-07 06:26:38,693 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=38.8 pTM=0.266 ipTM=0.184 tol=6.09
2024-12-07 06:27:10,575 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=38.9 pTM=0.27 ipTM=0.193 tol=3.06
2024-12-07 06:27:42,441 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=38.7 pTM=0.267 ipTM=0.185 tol=5.46
2024-12-07 06:28:14,301 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=38.7 pTM=0.263 ipTM=0.173 tol=5.36
2024-12-07 06:28:46,122 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=38.3 pTM=0.261 ipTM=0.178 tol=5.34
2024-12-07 06:29:17,929 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=38.4 pTM=0.264 ipTM=0.182 tol=4.15
2024-12-07 06:29:49,741 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=38.2 pTM=0.264 ipTM=0.18 tol=5.3
2024-12-07 06:30:21,568 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=38.7 pTM=0.269 ipTM=0.185 tol=6.05
2024-12-07 06:30:53,393 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=38.3 pTM=0.264 ipTM=0.182 tol=7.23
2024-12-07 06:31:25,303 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=38.3 pTM=0.266 ipTM=0.181 tol=6.73
2024-12-07 06:31:57,190 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=38.3 pTM=0.26 ipTM=0.172 tol=3.55
2024-12-07 06:32:29,084 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=38.7 pTM=0.263 ipTM=0.175 tol=5.2
2024-12-07 06:33:00,967 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=38.7 pTM=0.261 ipTM=0.178 tol=5.93
2024-12-07 06:33:32,844 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=38.4 pTM=0.266 ipTM=0.189 tol=6.26
2024-12-07 06:34:04,713 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=38.3 pTM=0.265 ipTM=0.192 tol=4.19
2024-12-07 06:34:36,595 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=38.4 pTM=0.269 ipTM=0.195 tol=5.01
2024-12-07 06:35:08,460 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=38.4 pTM=0.266 ipTM=0.197 tol=5.62
2024-12-07 06:35:40,326 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=38.7 pTM=0.266 ipTM=0.192 tol=3.64
2024-12-07 06:36:12,166 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=38.3 pTM=0.264 ipTM=0.194 tol=5.12
2024-12-07 06:36:44,011 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=38.5 pTM=0.266 ipTM=0.195 tol=3.77
2024-12-07 06:37:15,832 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=38.3 pTM=0.26 ipTM=0.187 tol=4.82
2024-12-07 06:37:15,833 alphafold2_multimer_v3_model_1_seed_000 took 1130.2s (30 recycles)
2024-12-07 06:37:48,498 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=38.6 pTM=0.269 ipTM=0.182
2024-12-07 06:38:20,414 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=39.8 pTM=0.278 ipTM=0.182 tol=18.4
2024-12-07 06:38:52,348 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=39.8 pTM=0.277 ipTM=0.179 tol=12.8
2024-12-07 06:39:24,270 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=40.2 pTM=0.275 ipTM=0.174 tol=7.71
2024-12-07 06:39:56,219 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=40.3 pTM=0.279 ipTM=0.181 tol=6.59
2024-12-07 06:40:28,152 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=40.6 pTM=0.295 ipTM=0.241 tol=4.05
2024-12-07 06:41:00,113 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=40.9 pTM=0.297 ipTM=0.242 tol=3.91
2024-12-07 06:41:32,075 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=41.1 pTM=0.312 ipTM=0.298 tol=4.43
2024-12-07 06:42:04,007 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=41.1 pTM=0.316 ipTM=0.311 tol=4.45
2024-12-07 06:42:35,986 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=40.9 pTM=0.314 ipTM=0.311 tol=2.81
2024-12-07 06:43:07,996 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=41.1 pTM=0.313 ipTM=0.3 tol=2.95
2024-12-07 06:43:39,985 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=41.4 pTM=0.327 ipTM=0.339 tol=2.91
2024-12-07 06:44:11,992 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=41.6 pTM=0.331 ipTM=0.339 tol=2.84
2024-12-07 06:44:43,956 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=42 pTM=0.341 ipTM=0.36 tol=3.45
2024-12-07 06:45:15,892 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=41.9 pTM=0.341 ipTM=0.364 tol=2.97
2024-12-07 06:45:47,824 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=42.1 pTM=0.343 ipTM=0.362 tol=2.48
2024-12-07 06:46:19,787 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=42.1 pTM=0.341 ipTM=0.358 tol=2.04
2024-12-07 06:46:51,713 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=42.1 pTM=0.337 ipTM=0.345 tol=2.35
2024-12-07 06:47:23,646 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=42 pTM=0.335 ipTM=0.337 tol=3.1
2024-12-07 06:47:55,624 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=42 pTM=0.334 ipTM=0.335 tol=2.03
2024-12-07 06:48:27,669 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=41.9 pTM=0.333 ipTM=0.332 tol=3.15
2024-12-07 06:48:59,647 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=42.2 pTM=0.338 ipTM=0.345 tol=3.11
2024-12-07 06:49:31,620 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=42.1 pTM=0.332 ipTM=0.328 tol=3.02
2024-12-07 06:50:03,627 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=42.2 pTM=0.335 ipTM=0.34 tol=2.64
2024-12-07 06:50:35,646 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=42.2 pTM=0.337 ipTM=0.34 tol=2.81
2024-12-07 06:51:07,668 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=42.1 pTM=0.333 ipTM=0.339 tol=2.08
2024-12-07 06:51:39,711 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=42.3 pTM=0.341 ipTM=0.355 tol=2.29
2024-12-07 06:52:11,723 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=42.1 pTM=0.334 ipTM=0.341 tol=2.45
2024-12-07 06:52:43,727 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=42.2 pTM=0.336 ipTM=0.338 tol=2.47
2024-12-07 06:53:15,729 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=42.2 pTM=0.34 ipTM=0.349 tol=1.91
2024-12-07 06:53:47,707 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=42.3 pTM=0.343 ipTM=0.358 tol=2.45
2024-12-07 06:53:47,708 alphafold2_multimer_v3_model_2_seed_000 took 991.1s (30 recycles)
2024-12-07 06:54:20,576 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=36.6 pTM=0.267 ipTM=0.197
2024-12-07 06:54:52,729 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=37.8 pTM=0.269 ipTM=0.178 tol=23
2024-12-07 06:55:24,948 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=38.2 pTM=0.268 ipTM=0.195 tol=11.2
2024-12-07 06:55:57,158 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=38.4 pTM=0.271 ipTM=0.24 tol=6.88
2024-12-07 06:56:29,393 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=38.5 pTM=0.269 ipTM=0.197 tol=7.67
2024-12-07 06:57:01,598 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=38.7 pTM=0.268 ipTM=0.174 tol=5.53
2024-12-07 06:57:33,800 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=38.7 pTM=0.267 ipTM=0.202 tol=4.21
2024-12-07 06:58:06,005 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=38.8 pTM=0.269 ipTM=0.208 tol=10.9
2024-12-07 06:58:38,203 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=38.8 pTM=0.268 ipTM=0.231 tol=9.57
2024-12-07 06:59:10,376 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=38.7 pTM=0.277 ipTM=0.221 tol=4.52
2024-12-07 06:59:42,542 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=38.8 pTM=0.273 ipTM=0.219 tol=3.35
2024-12-07 07:00:14,720 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=39 pTM=0.281 ipTM=0.204 tol=3.94
2024-12-07 07:00:46,928 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=39 pTM=0.278 ipTM=0.222 tol=2.48
2024-12-07 07:01:19,110 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=39.4 pTM=0.285 ipTM=0.212 tol=3.2
2024-12-07 07:01:51,268 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=39.2 pTM=0.283 ipTM=0.217 tol=2.5
2024-12-07 07:02:23,381 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=39.2 pTM=0.287 ipTM=0.216 tol=3.34
2024-12-07 07:02:55,500 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=39.3 pTM=0.284 ipTM=0.228 tol=3.59
2024-12-07 07:03:27,592 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=39.6 pTM=0.283 ipTM=0.219 tol=4.04
2024-12-07 07:03:59,701 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=39.6 pTM=0.289 ipTM=0.235 tol=4.28
2024-12-07 07:04:31,821 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=39.9 pTM=0.287 ipTM=0.226 tol=3.71
2024-12-07 07:05:03,934 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=39.3 pTM=0.282 ipTM=0.22 tol=2.66
2024-12-07 07:05:36,023 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=39.8 pTM=0.284 ipTM=0.214 tol=7.91
2024-12-07 07:06:08,115 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=39.8 pTM=0.287 ipTM=0.23 tol=4.11
2024-12-07 07:06:40,226 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=39.7 pTM=0.284 ipTM=0.217 tol=9.14
2024-12-07 07:07:12,345 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=39.8 pTM=0.288 ipTM=0.232 tol=8.91
2024-12-07 07:07:44,416 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=39.7 pTM=0.286 ipTM=0.224 tol=8.48
2024-12-07 07:08:16,518 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=39.6 pTM=0.285 ipTM=0.23 tol=4.53
2024-12-07 07:08:48,631 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=39.8 pTM=0.281 ipTM=0.215 tol=8.05
2024-12-07 07:09:20,752 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=39.5 pTM=0.279 ipTM=0.214 tol=10.6
2024-12-07 07:09:52,909 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=39.6 pTM=0.281 ipTM=0.217 tol=7.63
2024-12-07 07:10:25,037 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=39.7 pTM=0.28 ipTM=0.233 tol=4.7
2024-12-07 07:10:25,038 alphafold2_multimer_v3_model_3_seed_000 took 996.5s (30 recycles)
2024-12-07 07:10:57,878 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=36.1 pTM=0.288 ipTM=0.293
2024-12-07 07:11:29,984 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=37 pTM=0.276 ipTM=0.194 tol=17
2024-12-07 07:12:02,070 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=37.8 pTM=0.284 ipTM=0.202 tol=15.6
2024-12-07 07:12:34,147 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=37.7 pTM=0.288 ipTM=0.213 tol=10.6
2024-12-07 07:13:06,317 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=37.8 pTM=0.29 ipTM=0.206 tol=6.1
2024-12-07 07:13:38,474 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=38.1 pTM=0.286 ipTM=0.211 tol=7.43
2024-12-07 07:14:10,572 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=38.1 pTM=0.29 ipTM=0.202 tol=5.14
2024-12-07 07:14:42,629 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=38.2 pTM=0.286 ipTM=0.204 tol=6.68
2024-12-07 07:15:14,711 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=38.2 pTM=0.291 ipTM=0.201 tol=5.97
2024-12-07 07:15:46,774 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=37.9 pTM=0.287 ipTM=0.204 tol=4.52
2024-12-07 07:16:18,847 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=38 pTM=0.293 ipTM=0.22 tol=5.4
2024-12-07 07:16:50,884 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=37.9 pTM=0.285 ipTM=0.218 tol=8.27
2024-12-07 07:17:22,953 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=38.2 pTM=0.293 ipTM=0.212 tol=7.97
2024-12-07 07:17:55,061 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=38 pTM=0.285 ipTM=0.212 tol=3.41
2024-12-07 07:18:27,158 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=38.1 pTM=0.29 ipTM=0.214 tol=4.14
2024-12-07 07:18:59,158 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=37.7 pTM=0.284 ipTM=0.211 tol=4.92
2024-12-07 07:19:31,210 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=38 pTM=0.291 ipTM=0.208 tol=4.23
2024-12-07 07:20:03,295 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=37.7 pTM=0.283 ipTM=0.205 tol=5.76
2024-12-07 07:20:35,325 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=37.5 pTM=0.288 ipTM=0.211 tol=5.35
2024-12-07 07:21:07,317 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=37.8 pTM=0.288 ipTM=0.21 tol=4.45
2024-12-07 07:21:39,282 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=37.8 pTM=0.291 ipTM=0.197 tol=6.29
2024-12-07 07:22:11,270 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=37.8 pTM=0.286 ipTM=0.196 tol=4.53
2024-12-07 07:22:43,305 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=38 pTM=0.295 ipTM=0.209 tol=6.18
2024-12-07 07:23:15,378 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=38 pTM=0.29 ipTM=0.22 tol=6.28
2024-12-07 07:23:47,422 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=38.1 pTM=0.294 ipTM=0.219 tol=5.73
2024-12-07 07:24:19,515 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=38.1 pTM=0.287 ipTM=0.212 tol=6.6
2024-12-07 07:24:51,619 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=38 pTM=0.292 ipTM=0.22 tol=4.57
2024-12-07 07:25:23,731 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=38 pTM=0.287 ipTM=0.212 tol=4.9
2024-12-07 07:25:55,806 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=37.9 pTM=0.289 ipTM=0.208 tol=3.97
2024-12-07 07:26:27,890 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=37.8 pTM=0.287 ipTM=0.196 tol=5.1
2024-12-07 07:26:59,957 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=37.9 pTM=0.292 ipTM=0.193 tol=3.96
2024-12-07 07:26:59,958 alphafold2_multimer_v3_model_4_seed_000 took 994.1s (30 recycles)
2024-12-07 07:27:32,921 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=36.9 pTM=0.279 ipTM=0.204
2024-12-07 07:28:05,134 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=38.7 pTM=0.275 ipTM=0.2 tol=20.9
2024-12-07 07:28:37,345 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=38.3 pTM=0.276 ipTM=0.178 tol=16
2024-12-07 07:29:09,567 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=38.6 pTM=0.277 ipTM=0.171 tol=14
2024-12-07 07:29:41,804 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=38.5 pTM=0.274 ipTM=0.166 tol=9.52
2024-12-07 07:30:14,026 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=39 pTM=0.271 ipTM=0.164 tol=12.3
2024-12-07 07:30:46,281 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=39.5 pTM=0.271 ipTM=0.161 tol=13.8
2024-12-07 07:31:18,505 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=39.2 pTM=0.273 ipTM=0.168 tol=8.43
2024-12-07 07:31:50,708 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=39.4 pTM=0.273 ipTM=0.165 tol=6.63
2024-12-07 07:32:22,889 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=38.8 pTM=0.28 ipTM=0.19 tol=10.7
2024-12-07 07:32:55,071 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=39.3 pTM=0.289 ipTM=0.234 tol=5.52
2024-12-07 07:33:27,321 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=39.4 pTM=0.275 ipTM=0.171 tol=10.3
2024-12-07 07:33:59,503 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=39.8 pTM=0.276 ipTM=0.175 tol=7.54
2024-12-07 07:34:31,697 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=39.8 pTM=0.272 ipTM=0.174 tol=5.67
2024-12-07 07:35:03,886 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=39.8 pTM=0.266 ipTM=0.192 tol=12
2024-12-07 07:35:36,042 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=39.8 pTM=0.27 ipTM=0.21 tol=6.85
2024-12-07 07:36:08,241 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=39.3 pTM=0.269 ipTM=0.183 tol=8.59
2024-12-07 07:36:40,437 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=39.5 pTM=0.27 ipTM=0.178 tol=4.82
2024-12-07 07:37:12,628 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=39.2 pTM=0.268 ipTM=0.193 tol=5.01
2024-12-07 07:37:44,807 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=39.4 pTM=0.271 ipTM=0.192 tol=4.91
2024-12-07 07:38:17,018 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=39.3 pTM=0.268 ipTM=0.194 tol=6.54
2024-12-07 07:38:49,255 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=39.8 pTM=0.271 ipTM=0.2 tol=4.73
2024-12-07 07:39:21,493 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=39.3 pTM=0.269 ipTM=0.194 tol=6.88
2024-12-07 07:39:53,668 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=39.2 pTM=0.27 ipTM=0.187 tol=6.11
2024-12-07 07:40:25,829 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=39.4 pTM=0.269 ipTM=0.198 tol=5.07
2024-12-07 07:40:57,984 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=39.4 pTM=0.269 ipTM=0.198 tol=4.96
2024-12-07 07:41:30,097 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=39.4 pTM=0.27 ipTM=0.198 tol=4.12
2024-12-07 07:42:02,215 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=39.5 pTM=0.268 ipTM=0.19 tol=3.46
2024-12-07 07:42:34,352 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=39.4 pTM=0.27 ipTM=0.195 tol=4.05
2024-12-07 07:43:06,511 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=39.4 pTM=0.271 ipTM=0.196 tol=3.5
2024-12-07 07:43:38,652 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=39.5 pTM=0.271 ipTM=0.198 tol=3.97
2024-12-07 07:43:38,653 alphafold2_multimer_v3_model_5_seed_000 took 997.9s (30 recycles)
2024-12-07 07:43:39,460 reranking models by 'multimer' metric
2024-12-07 07:43:42,847 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 07:45:50,067 Relaxation took 130.6s
2024-12-07 07:45:50,067 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=42.3 pTM=0.343 ipTM=0.358
2024-12-07 07:47:42,780 Relaxation took 112.7s
2024-12-07 07:47:42,780 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=39.7 pTM=0.28 ipTM=0.233
2024-12-07 07:49:10,132 Relaxation took 87.3s
2024-12-07 07:49:10,132 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=37.9 pTM=0.292 ipTM=0.193
2024-12-07 07:51:08,672 Relaxation took 118.5s
2024-12-07 07:51:08,673 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=39.5 pTM=0.271 ipTM=0.198
2024-12-07 07:52:42,160 Relaxation took 93.5s
2024-12-07 07:52:42,160 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=38.3 pTM=0.26 ipTM=0.187
2024-12-07 07:52:44,383 Done