2024-12-07 06:21:35,769 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 06:21:36,081 Running on GPU
2024-12-07 06:21:39,417 Found 6 citations for tools or databases
2024-12-07 06:21:39,417 Query 1/1: MKRN2_NXF1 (length 1035)
2024-12-07 06:21:39,744 Sleeping for 10s. Reason: PENDING
2024-12-07 06:21:50,009 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:22:00,266 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:22:07,522 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:22:14,784 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:22:20,034 Sleeping for 9s. Reason: RUNNING
2024-12-07 06:22:29,295 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:22:39,555 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:22:45,816 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:22:56,079 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:23:02,334 Sleeping for 6s. Reason: RUNNING
2024-12-07 06:23:08,587 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:23:18,842 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:23:29,105 Sleeping for 9s. Reason: RUNNING
2024-12-07 06:23:39,932 Sleeping for 6s. Reason: PENDING
2024-12-07 06:23:46,186 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:23:56,444 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:24:01,697 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:24:06,949 Sleeping for 7s. Reason: RUNNING
2024-12-07 06:24:14,208 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:24:19,462 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:24:29,721 Sleeping for 5s. Reason: RUNNING
2024-12-07 06:24:34,977 Sleeping for 10s. Reason: RUNNING
2024-12-07 06:24:47,796 Setting max_seq=508, max_extra_seq=2048
2024-12-07 06:27:48,090 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=59.6 pTM=0.29 ipTM=0.166
2024-12-07 06:28:12,433 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=60.9 pTM=0.293 ipTM=0.164 tol=9.61
2024-12-07 06:28:36,843 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=59.5 pTM=0.291 ipTM=0.165 tol=4.77
2024-12-07 06:29:01,305 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=58.6 pTM=0.29 ipTM=0.155 tol=7.45
2024-12-07 06:29:25,800 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=59 pTM=0.29 ipTM=0.156 tol=3.82
2024-12-07 06:29:50,327 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.7 pTM=0.291 ipTM=0.156 tol=4.23
2024-12-07 06:30:14,890 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=58.9 pTM=0.291 ipTM=0.156 tol=4.2
2024-12-07 06:30:39,467 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=59.2 pTM=0.29 ipTM=0.156 tol=2.95
2024-12-07 06:31:04,048 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=58.9 pTM=0.29 ipTM=0.156 tol=1.77
2024-12-07 06:31:28,641 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=59.1 pTM=0.292 ipTM=0.157 tol=3.06
2024-12-07 06:31:53,243 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=58.8 pTM=0.291 ipTM=0.162 tol=2.05
2024-12-07 06:32:17,832 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=58.8 pTM=0.291 ipTM=0.159 tol=2.85
2024-12-07 06:32:42,428 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58.8 pTM=0.29 ipTM=0.155 tol=3.05
2024-12-07 06:33:07,045 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=59 pTM=0.29 ipTM=0.157 tol=2.67
2024-12-07 06:33:31,650 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.4 pTM=0.292 ipTM=0.156 tol=4.74
2024-12-07 06:33:56,262 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.6 pTM=0.294 ipTM=0.162 tol=3.83
2024-12-07 06:34:20,867 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=59.1 pTM=0.293 ipTM=0.162 tol=3.54
2024-12-07 06:34:45,468 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=58.6 pTM=0.293 ipTM=0.162 tol=2.58
2024-12-07 06:35:10,066 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.6 pTM=0.293 ipTM=0.161 tol=2.56
2024-12-07 06:35:34,684 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=58.2 pTM=0.294 ipTM=0.164 tol=2.51
2024-12-07 06:35:59,333 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=58.3 pTM=0.293 ipTM=0.163 tol=1.74
2024-12-07 06:36:23,985 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=58.2 pTM=0.293 ipTM=0.163 tol=3.21
2024-12-07 06:36:48,655 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.2 pTM=0.292 ipTM=0.163 tol=4.06
2024-12-07 06:37:13,322 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.2 pTM=0.292 ipTM=0.162 tol=3.88
2024-12-07 06:37:37,972 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=57.7 pTM=0.292 ipTM=0.165 tol=2.3
2024-12-07 06:38:02,603 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.1 pTM=0.294 ipTM=0.166 tol=4.63
2024-12-07 06:38:27,230 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=58.3 pTM=0.292 ipTM=0.164 tol=3.29
2024-12-07 06:38:51,861 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58.1 pTM=0.293 ipTM=0.164 tol=1.76
2024-12-07 06:39:16,506 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=58.4 pTM=0.292 ipTM=0.163 tol=2.81
2024-12-07 06:39:41,154 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=58.6 pTM=0.293 ipTM=0.163 tol=2.58
2024-12-07 06:40:05,780 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.2 pTM=0.292 ipTM=0.162 tol=1.79
2024-12-07 06:40:05,781 alphafold2_multimer_v3_model_1_seed_000 took 912.5s (30 recycles)
2024-12-07 06:40:31,078 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=61.7 pTM=0.293 ipTM=0.152
2024-12-07 06:40:55,725 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=64.2 pTM=0.348 ipTM=0.395 tol=21.5
2024-12-07 06:41:20,386 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=65 pTM=0.365 ipTM=0.417 tol=9.09
2024-12-07 06:41:45,038 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=65.5 pTM=0.378 ipTM=0.425 tol=6.62
2024-12-07 06:42:09,681 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=66.1 pTM=0.385 ipTM=0.431 tol=3.78
2024-12-07 06:42:34,312 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=66.1 pTM=0.387 ipTM=0.43 tol=2.34
2024-12-07 06:42:58,946 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=66.1 pTM=0.39 ipTM=0.429 tol=3.7
2024-12-07 06:43:23,597 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=66 pTM=0.391 ipTM=0.431 tol=4.79
2024-12-07 06:43:48,230 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=66.4 pTM=0.395 ipTM=0.433 tol=2.16
2024-12-07 06:44:12,857 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=66.4 pTM=0.397 ipTM=0.432 tol=3.44
2024-12-07 06:44:37,500 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=66.1 pTM=0.393 ipTM=0.429 tol=10.8
2024-12-07 06:45:02,157 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=66.1 pTM=0.395 ipTM=0.433 tol=4.97
2024-12-07 06:45:26,801 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=66.1 pTM=0.394 ipTM=0.433 tol=3.41
2024-12-07 06:45:51,426 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=66.4 pTM=0.395 ipTM=0.432 tol=3.65
2024-12-07 06:46:16,077 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=66.2 pTM=0.394 ipTM=0.431 tol=3.55
2024-12-07 06:46:40,729 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=66.1 pTM=0.392 ipTM=0.43 tol=2.04
2024-12-07 06:47:05,399 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=66.3 pTM=0.391 ipTM=0.429 tol=3.08
2024-12-07 06:47:30,052 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=65.9 pTM=0.39 ipTM=0.426 tol=1.57
2024-12-07 06:47:54,695 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=66.1 pTM=0.392 ipTM=0.427 tol=2.89
2024-12-07 06:48:19,330 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=66.4 pTM=0.393 ipTM=0.429 tol=2.68
2024-12-07 06:48:43,975 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=66.6 pTM=0.398 ipTM=0.434 tol=1.63
2024-12-07 06:49:08,609 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=66.7 pTM=0.398 ipTM=0.431 tol=1.66
2024-12-07 06:49:33,237 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=66.8 pTM=0.398 ipTM=0.431 tol=2.75
2024-12-07 06:49:57,868 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=66.6 pTM=0.399 ipTM=0.433 tol=3.21
2024-12-07 06:50:22,503 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=66.3 pTM=0.395 ipTM=0.429 tol=1.31
2024-12-07 06:50:47,149 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=66.4 pTM=0.397 ipTM=0.431 tol=1.83
2024-12-07 06:51:11,790 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=66.4 pTM=0.393 ipTM=0.428 tol=1.63
2024-12-07 06:51:36,452 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=66.4 pTM=0.396 ipTM=0.429 tol=2.14
2024-12-07 06:52:01,122 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=66.6 pTM=0.395 ipTM=0.424 tol=2.71
2024-12-07 06:52:25,791 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=66.9 pTM=0.396 ipTM=0.427 tol=1.71
2024-12-07 06:52:50,452 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=66.9 pTM=0.4 ipTM=0.43 tol=3.06
2024-12-07 06:52:50,453 alphafold2_multimer_v3_model_2_seed_000 took 764.0s (30 recycles)
2024-12-07 06:53:15,870 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=59 pTM=0.29 ipTM=0.161
2024-12-07 06:53:40,605 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=59.8 pTM=0.29 ipTM=0.152 tol=12.5
2024-12-07 06:54:05,297 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.8 pTM=0.29 ipTM=0.157 tol=6.12
2024-12-07 06:54:30,006 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60.3 pTM=0.291 ipTM=0.153 tol=5.77
2024-12-07 06:54:54,726 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=60.4 pTM=0.295 ipTM=0.164 tol=4.27
2024-12-07 06:55:19,448 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.9 pTM=0.301 ipTM=0.171 tol=4.46
2024-12-07 06:55:44,162 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.5 pTM=0.297 ipTM=0.167 tol=4.14
2024-12-07 06:56:08,849 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.7 pTM=0.305 ipTM=0.18 tol=4.65
2024-12-07 06:56:33,552 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.5 pTM=0.298 ipTM=0.171 tol=5.53
2024-12-07 06:56:58,295 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=61 pTM=0.301 ipTM=0.171 tol=3.73
2024-12-07 06:57:23,001 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.8 pTM=0.308 ipTM=0.239 tol=4.82
2024-12-07 06:57:47,720 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=61 pTM=0.303 ipTM=0.179 tol=3.45
2024-12-07 06:58:12,438 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.6 pTM=0.301 ipTM=0.17 tol=2.85
2024-12-07 06:58:37,175 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=61 pTM=0.304 ipTM=0.171 tol=2.76
2024-12-07 06:59:01,904 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=60.5 pTM=0.3 ipTM=0.168 tol=2.38
2024-12-07 06:59:26,634 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=60.8 pTM=0.299 ipTM=0.166 tol=2.49
2024-12-07 06:59:51,339 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.8 pTM=0.302 ipTM=0.193 tol=4.7
2024-12-07 07:00:16,052 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.9 pTM=0.302 ipTM=0.17 tol=2.98
2024-12-07 07:00:40,778 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.5 pTM=0.3 ipTM=0.169 tol=2.42
2024-12-07 07:01:05,477 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=61.1 pTM=0.308 ipTM=0.216 tol=3.87
2024-12-07 07:01:30,172 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=60.5 pTM=0.302 ipTM=0.178 tol=2.92
2024-12-07 07:01:54,864 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=58.4 pTM=0.308 ipTM=0.179 tol=17.2
2024-12-07 07:02:19,594 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=59.7 pTM=0.287 ipTM=0.157 tol=10.2
2024-12-07 07:02:44,307 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=60.8 pTM=0.298 ipTM=0.161 tol=8.15
2024-12-07 07:03:09,015 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=60.3 pTM=0.297 ipTM=0.161 tol=4.45
2024-12-07 07:03:33,710 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=60.7 pTM=0.305 ipTM=0.169 tol=3.15
2024-12-07 07:03:58,417 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=60.7 pTM=0.301 ipTM=0.166 tol=3.05
2024-12-07 07:04:23,134 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.7 pTM=0.303 ipTM=0.169 tol=3.24
2024-12-07 07:04:47,861 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=60.3 pTM=0.3 ipTM=0.167 tol=4.04
2024-12-07 07:05:12,581 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=60.6 pTM=0.302 ipTM=0.168 tol=3.31
2024-12-07 07:05:37,282 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=60.3 pTM=0.3 ipTM=0.168 tol=2.12
2024-12-07 07:05:37,282 alphafold2_multimer_v3_model_3_seed_000 took 766.2s (30 recycles)
2024-12-07 07:06:02,660 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.5 pTM=0.318 ipTM=0.238
2024-12-07 07:06:27,427 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=58.8 pTM=0.283 ipTM=0.156 tol=9.8
2024-12-07 07:06:52,195 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=59.4 pTM=0.284 ipTM=0.142 tol=9.05
2024-12-07 07:07:16,957 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=60.3 pTM=0.282 ipTM=0.138 tol=8.38
2024-12-07 07:07:41,747 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=59.7 pTM=0.284 ipTM=0.141 tol=5.52
2024-12-07 07:08:06,503 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=59.8 pTM=0.283 ipTM=0.2 tol=13.1
2024-12-07 07:08:31,287 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=61.2 pTM=0.29 ipTM=0.271 tol=5.32
2024-12-07 07:08:56,036 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=62.1 pTM=0.323 ipTM=0.33 tol=3.73
2024-12-07 07:09:20,790 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=63.2 pTM=0.351 ipTM=0.378 tol=3.56
2024-12-07 07:09:45,522 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=63.7 pTM=0.371 ipTM=0.409 tol=4.34
2024-12-07 07:10:10,264 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=64 pTM=0.38 ipTM=0.428 tol=2.71
2024-12-07 07:10:34,996 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=64.2 pTM=0.389 ipTM=0.439 tol=1.92
2024-12-07 07:10:59,739 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=64.1 pTM=0.39 ipTM=0.445 tol=2.06
2024-12-07 07:11:24,466 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=64.2 pTM=0.393 ipTM=0.447 tol=2.16
2024-12-07 07:11:49,188 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=64.2 pTM=0.395 ipTM=0.448 tol=2.83
2024-12-07 07:12:13,884 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=64.4 pTM=0.395 ipTM=0.452 tol=5.07
2024-12-07 07:12:38,569 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=64.4 pTM=0.396 ipTM=0.453 tol=3.14
2024-12-07 07:13:03,265 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=64.4 pTM=0.396 ipTM=0.453 tol=2.2
2024-12-07 07:13:27,956 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=64.4 pTM=0.399 ipTM=0.455 tol=1.88
2024-12-07 07:13:52,632 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=64.4 pTM=0.4 ipTM=0.459 tol=2.1
2024-12-07 07:14:17,325 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=64.2 pTM=0.394 ipTM=0.453 tol=1.37
2024-12-07 07:14:41,998 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=64.3 pTM=0.398 ipTM=0.454 tol=1.51
2024-12-07 07:15:06,678 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=64.3 pTM=0.397 ipTM=0.452 tol=1.5
2024-12-07 07:15:31,347 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=64.4 pTM=0.399 ipTM=0.457 tol=2.04
2024-12-07 07:15:56,026 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=64.2 pTM=0.393 ipTM=0.448 tol=1.7
2024-12-07 07:16:20,718 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=64.3 pTM=0.394 ipTM=0.45 tol=1.72
2024-12-07 07:16:45,402 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=64.5 pTM=0.392 ipTM=0.448 tol=1.53
2024-12-07 07:17:10,080 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=64.4 pTM=0.394 ipTM=0.454 tol=3.29
2024-12-07 07:17:34,769 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=64.4 pTM=0.391 ipTM=0.448 tol=3.53
2024-12-07 07:17:59,453 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=64.8 pTM=0.396 ipTM=0.456 tol=1.98
2024-12-07 07:18:24,168 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=64.7 pTM=0.397 ipTM=0.454 tol=2.19
2024-12-07 07:18:24,169 alphafold2_multimer_v3_model_4_seed_000 took 766.2s (30 recycles)
2024-12-07 07:18:49,532 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=57.6 pTM=0.304 ipTM=0.199
2024-12-07 07:19:14,268 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59.5 pTM=0.298 ipTM=0.161 tol=10.6
2024-12-07 07:19:38,990 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=59.6 pTM=0.298 ipTM=0.165 tol=8.74
2024-12-07 07:20:03,746 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.5 pTM=0.298 ipTM=0.159 tol=6.36
2024-12-07 07:20:28,493 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=60.4 pTM=0.297 ipTM=0.158 tol=5.54
2024-12-07 07:20:53,233 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=60.5 pTM=0.303 ipTM=0.166 tol=5.11
2024-12-07 07:21:17,978 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=60.7 pTM=0.301 ipTM=0.17 tol=2.59
2024-12-07 07:21:42,714 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=61 pTM=0.302 ipTM=0.17 tol=3.26
2024-12-07 07:22:07,475 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.5 pTM=0.302 ipTM=0.168 tol=4.61
2024-12-07 07:22:32,225 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.2 pTM=0.3 ipTM=0.159 tol=4.6
2024-12-07 07:22:56,962 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=60.8 pTM=0.299 ipTM=0.17 tol=4.34
2024-12-07 07:23:21,693 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60.7 pTM=0.301 ipTM=0.175 tol=3.51
2024-12-07 07:23:46,446 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=60.6 pTM=0.3 ipTM=0.174 tol=2.1
2024-12-07 07:24:11,180 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=61.8 pTM=0.347 ipTM=0.295 tol=5.43
2024-12-07 07:24:35,938 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=60.1 pTM=0.305 ipTM=0.194 tol=4.62
2024-12-07 07:25:00,704 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=60.6 pTM=0.302 ipTM=0.178 tol=4.55
2024-12-07 07:25:25,454 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=60.5 pTM=0.311 ipTM=0.204 tol=4.38
2024-12-07 07:25:50,210 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=60.8 pTM=0.299 ipTM=0.171 tol=3.31
2024-12-07 07:26:14,953 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=60.8 pTM=0.298 ipTM=0.165 tol=3.19
2024-12-07 07:26:39,653 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61 pTM=0.321 ipTM=0.226 tol=6.37
2024-12-07 07:27:04,381 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=60.7 pTM=0.302 ipTM=0.167 tol=4.16
2024-12-07 07:27:29,110 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=61.1 pTM=0.303 ipTM=0.164 tol=3.03
2024-12-07 07:27:53,805 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=60.7 pTM=0.323 ipTM=0.229 tol=5.49
2024-12-07 07:28:18,543 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=61 pTM=0.302 ipTM=0.162 tol=4.63
2024-12-07 07:28:43,271 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=60.8 pTM=0.301 ipTM=0.164 tol=4.02
2024-12-07 07:29:08,029 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=61 pTM=0.3 ipTM=0.162 tol=3.87
2024-12-07 07:29:32,776 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=61.3 pTM=0.302 ipTM=0.169 tol=4.76
2024-12-07 07:29:57,519 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=61.5 pTM=0.301 ipTM=0.167 tol=5.17
2024-12-07 07:30:22,246 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=61.3 pTM=0.305 ipTM=0.175 tol=5.16
2024-12-07 07:30:46,997 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=61.6 pTM=0.302 ipTM=0.169 tol=5.76
2024-12-07 07:31:11,727 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=61.1 pTM=0.303 ipTM=0.17 tol=4.36
2024-12-07 07:31:11,728 alphafold2_multimer_v3_model_5_seed_000 took 766.9s (30 recycles)
2024-12-07 07:31:12,383 reranking models by 'multimer' metric
2024-12-07 07:31:15,679 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 07:32:35,392 Relaxation took 83.0s
2024-12-07 07:32:35,392 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=64.7 pTM=0.397 ipTM=0.454
2024-12-07 07:34:03,466 Relaxation took 88.1s
2024-12-07 07:34:03,466 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=66.9 pTM=0.4 ipTM=0.43
2024-12-07 07:35:08,622 Relaxation took 65.2s
2024-12-07 07:35:08,622 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=61.1 pTM=0.303 ipTM=0.17
2024-12-07 07:36:42,630 Relaxation took 94.0s
2024-12-07 07:36:42,630 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=60.3 pTM=0.3 ipTM=0.168
2024-12-07 07:38:00,631 Relaxation took 78.0s
2024-12-07 07:38:00,631 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.2 pTM=0.292 ipTM=0.162
2024-12-07 07:38:02,486 Done