2024-12-07 07:17:00,907 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 07:17:01,224 Running on GPU
2024-12-07 07:17:04,797 Found 6 citations for tools or databases
2024-12-07 07:17:04,797 Query 1/1: MNAT1_CNOT3 (length 1062)
2024-12-07 07:17:05,086 Sleeping for 6s. Reason: PENDING
2024-12-07 07:17:11,346 Sleeping for 6s. Reason: RUNNING
2024-12-07 07:17:17,598 Sleeping for 5s. Reason: RUNNING
2024-12-07 07:17:22,860 Sleeping for 10s. Reason: RUNNING
2024-12-07 07:17:33,127 Sleeping for 5s. Reason: RUNNING
2024-12-07 07:17:38,381 Sleeping for 10s. Reason: RUNNING
2024-12-07 07:17:48,645 Sleeping for 7s. Reason: RUNNING
2024-12-07 07:17:55,907 Sleeping for 9s. Reason: RUNNING
2024-12-07 07:18:05,170 Sleeping for 7s. Reason: RUNNING
2024-12-07 07:18:13,324 Sleeping for 10s. Reason: PENDING
2024-12-07 07:18:23,590 Sleeping for 9s. Reason: RUNNING
2024-12-07 07:18:32,858 Sleeping for 6s. Reason: RUNNING
2024-12-07 07:18:39,112 Sleeping for 6s. Reason: RUNNING
2024-12-07 07:18:45,366 Sleeping for 7s. Reason: RUNNING
2024-12-07 07:18:52,632 Sleeping for 6s. Reason: RUNNING
2024-12-07 07:18:58,895 Sleeping for 10s. Reason: RUNNING
2024-12-07 07:19:09,157 Sleeping for 6s. Reason: RUNNING
2024-12-07 07:19:17,926 Setting max_seq=508, max_extra_seq=2048
2024-12-07 07:22:11,999 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=52 pTM=0.256 ipTM=0.192
2024-12-07 07:22:38,270 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=52.7 pTM=0.266 ipTM=0.227 tol=13.4
2024-12-07 07:23:04,647 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=52.7 pTM=0.268 ipTM=0.239 tol=5.46
2024-12-07 07:23:31,106 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.4 pTM=0.267 ipTM=0.225 tol=4.99
2024-12-07 07:23:57,624 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.2 pTM=0.254 ipTM=0.188 tol=7.92
2024-12-07 07:24:24,227 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.3 pTM=0.256 ipTM=0.192 tol=5.11
2024-12-07 07:24:50,883 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=53.1 pTM=0.252 ipTM=0.181 tol=8.8
2024-12-07 07:25:17,570 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=53.3 pTM=0.248 ipTM=0.172 tol=4.24
2024-12-07 07:25:44,246 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=53.2 pTM=0.25 ipTM=0.181 tol=2.94
2024-12-07 07:26:10,927 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=53.3 pTM=0.25 ipTM=0.188 tol=3.26
2024-12-07 07:26:37,606 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=53.3 pTM=0.25 ipTM=0.179 tol=3.02
2024-12-07 07:27:04,280 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=53.5 pTM=0.252 ipTM=0.19 tol=2.34
2024-12-07 07:27:31,098 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=53.6 pTM=0.249 ipTM=0.177 tol=3.35
2024-12-07 07:27:57,869 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=53.7 pTM=0.25 ipTM=0.178 tol=5.84
2024-12-07 07:28:24,658 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=53.1 pTM=0.246 ipTM=0.165 tol=6.64
2024-12-07 07:28:51,419 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=53.2 pTM=0.247 ipTM=0.177 tol=6.09
2024-12-07 07:29:18,191 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=52.8 pTM=0.242 ipTM=0.16 tol=6.24
2024-12-07 07:29:44,939 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=53.1 pTM=0.242 ipTM=0.16 tol=4.69
2024-12-07 07:30:11,695 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=53.1 pTM=0.245 ipTM=0.17 tol=4.57
2024-12-07 07:30:38,431 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=53.4 pTM=0.244 ipTM=0.16 tol=6.1
2024-12-07 07:31:05,171 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=52.7 pTM=0.238 ipTM=0.15 tol=6.36
2024-12-07 07:31:31,917 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=52.8 pTM=0.237 ipTM=0.153 tol=3.49
2024-12-07 07:31:58,663 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=52.8 pTM=0.237 ipTM=0.148 tol=4.84
2024-12-07 07:32:25,408 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=53.1 pTM=0.237 ipTM=0.152 tol=5.64
2024-12-07 07:32:52,164 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=52.8 pTM=0.237 ipTM=0.154 tol=3.36
2024-12-07 07:33:18,957 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=52.9 pTM=0.238 ipTM=0.158 tol=3.06
2024-12-07 07:33:45,706 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=52.4 pTM=0.236 ipTM=0.158 tol=2.55
2024-12-07 07:34:12,437 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=52.9 pTM=0.238 ipTM=0.159 tol=3.56
2024-12-07 07:34:39,177 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=53.1 pTM=0.24 ipTM=0.157 tol=10.2
2024-12-07 07:35:05,915 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=53.2 pTM=0.24 ipTM=0.154 tol=3.48
2024-12-07 07:35:32,654 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=52.6 pTM=0.236 ipTM=0.154 tol=9.98
2024-12-07 07:35:32,655 alphafold2_multimer_v3_model_1_seed_000 took 969.5s (30 recycles)
2024-12-07 07:36:00,080 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=52.4 pTM=0.262 ipTM=0.181
2024-12-07 07:36:26,795 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=53.5 pTM=0.266 ipTM=0.229 tol=12.5
2024-12-07 07:36:53,524 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=53.4 pTM=0.267 ipTM=0.222 tol=7.19
2024-12-07 07:37:20,287 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=53.5 pTM=0.269 ipTM=0.203 tol=7.34
2024-12-07 07:37:47,053 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=53.5 pTM=0.265 ipTM=0.187 tol=8.48
2024-12-07 07:38:13,841 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=53.6 pTM=0.267 ipTM=0.193 tol=9.57
2024-12-07 07:38:40,617 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=53.6 pTM=0.259 ipTM=0.173 tol=7.58
2024-12-07 07:39:07,407 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=53.8 pTM=0.26 ipTM=0.173 tol=4.63
2024-12-07 07:39:34,180 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=53.8 pTM=0.26 ipTM=0.169 tol=5.99
2024-12-07 07:40:00,917 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=54.1 pTM=0.262 ipTM=0.172 tol=3.83
2024-12-07 07:40:27,667 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=53.8 pTM=0.262 ipTM=0.174 tol=3.64
2024-12-07 07:40:54,380 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=54.2 pTM=0.265 ipTM=0.181 tol=8.53
2024-12-07 07:41:21,076 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=53.8 pTM=0.262 ipTM=0.169 tol=9.37
2024-12-07 07:41:47,772 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=53.9 pTM=0.264 ipTM=0.177 tol=3.49
2024-12-07 07:42:14,433 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=53.8 pTM=0.262 ipTM=0.171 tol=3.21
2024-12-07 07:42:41,167 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=54 pTM=0.267 ipTM=0.191 tol=4.81
2024-12-07 07:43:07,887 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=53.9 pTM=0.264 ipTM=0.177 tol=4.74
2024-12-07 07:43:34,598 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=54 pTM=0.266 ipTM=0.189 tol=3.93
2024-12-07 07:44:01,242 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=53.8 pTM=0.266 ipTM=0.186 tol=3.51
2024-12-07 07:44:27,867 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=53.8 pTM=0.263 ipTM=0.174 tol=4.73
2024-12-07 07:44:54,533 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=53.5 pTM=0.257 ipTM=0.16 tol=5.19
2024-12-07 07:45:21,199 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=53.7 pTM=0.261 ipTM=0.167 tol=2.9
2024-12-07 07:45:47,878 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=53.5 pTM=0.257 ipTM=0.156 tol=3.74
2024-12-07 07:46:14,554 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=53.5 pTM=0.257 ipTM=0.151 tol=7.99
2024-12-07 07:46:41,212 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=53 pTM=0.259 ipTM=0.167 tol=11.1
2024-12-07 07:47:07,931 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=53.8 pTM=0.261 ipTM=0.169 tol=10.2
2024-12-07 07:47:34,587 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=53.6 pTM=0.258 ipTM=0.157 tol=4.61
2024-12-07 07:48:01,220 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=53.7 pTM=0.261 ipTM=0.163 tol=2.46
2024-12-07 07:48:27,843 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=53.8 pTM=0.26 ipTM=0.165 tol=7.69
2024-12-07 07:48:54,484 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=53.8 pTM=0.26 ipTM=0.159 tol=9.49
2024-12-07 07:49:21,151 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=54.1 pTM=0.26 ipTM=0.161 tol=3.25
2024-12-07 07:49:21,152 alphafold2_multimer_v3_model_2_seed_000 took 827.8s (30 recycles)
2024-12-07 07:49:48,639 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=53.1 pTM=0.254 ipTM=0.154
2024-12-07 07:50:15,512 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=53.5 pTM=0.25 ipTM=0.148 tol=20.3
2024-12-07 07:50:42,371 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=53.8 pTM=0.26 ipTM=0.164 tol=9.29
2024-12-07 07:51:09,224 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=53.7 pTM=0.268 ipTM=0.184 tol=6.7
2024-12-07 07:51:36,041 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=53.8 pTM=0.273 ipTM=0.207 tol=9.55
2024-12-07 07:52:02,850 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=53.7 pTM=0.273 ipTM=0.194 tol=5.35
2024-12-07 07:52:29,664 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=53.7 pTM=0.275 ipTM=0.222 tol=5.89
2024-12-07 07:52:56,410 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=54 pTM=0.279 ipTM=0.211 tol=5.35
2024-12-07 07:53:23,195 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=53.9 pTM=0.285 ipTM=0.245 tol=4.79
2024-12-07 07:53:50,046 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=54 pTM=0.285 ipTM=0.23 tol=4.27
2024-12-07 07:54:16,881 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=54 pTM=0.288 ipTM=0.246 tol=4.09
2024-12-07 07:54:43,729 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=53.9 pTM=0.285 ipTM=0.232 tol=11.2
2024-12-07 07:55:10,570 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=54 pTM=0.288 ipTM=0.244 tol=9.35
2024-12-07 07:55:37,371 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=54.1 pTM=0.285 ipTM=0.223 tol=4.22
2024-12-07 07:56:04,181 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=53.8 pTM=0.287 ipTM=0.235 tol=3.44
2024-12-07 07:56:30,913 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=54 pTM=0.283 ipTM=0.224 tol=3.21
2024-12-07 07:56:57,624 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=53.7 pTM=0.285 ipTM=0.222 tol=3.97
2024-12-07 07:57:24,328 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=53.9 pTM=0.284 ipTM=0.224 tol=2.87
2024-12-07 07:57:51,039 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=54 pTM=0.286 ipTM=0.246 tol=3.75
2024-12-07 07:58:17,752 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=54.2 pTM=0.283 ipTM=0.224 tol=4.29
2024-12-07 07:58:44,489 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=53.8 pTM=0.282 ipTM=0.236 tol=8.3
2024-12-07 07:59:11,330 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=53.5 pTM=0.279 ipTM=0.224 tol=6.98
2024-12-07 07:59:38,177 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=53.8 pTM=0.281 ipTM=0.232 tol=6.41
2024-12-07 08:00:05,041 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=54.1 pTM=0.281 ipTM=0.225 tol=5.73
2024-12-07 08:00:31,884 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=54.2 pTM=0.286 ipTM=0.249 tol=5.05
2024-12-07 08:00:58,718 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=54 pTM=0.282 ipTM=0.219 tol=6.26
2024-12-07 08:01:25,546 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=53.9 pTM=0.291 ipTM=0.248 tol=4.66
2024-12-07 08:01:52,397 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=54 pTM=0.291 ipTM=0.223 tol=4.26
2024-12-07 08:02:19,227 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=54 pTM=0.297 ipTM=0.249 tol=3.38
2024-12-07 08:02:46,078 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=54 pTM=0.308 ipTM=0.262 tol=9.83
2024-12-07 08:03:12,943 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=53.7 pTM=0.306 ipTM=0.271 tol=7.56
2024-12-07 08:03:12,944 alphafold2_multimer_v3_model_3_seed_000 took 831.1s (30 recycles)
2024-12-07 08:03:40,646 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=50.8 pTM=0.246 ipTM=0.166
2024-12-07 08:04:07,611 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=51.4 pTM=0.245 ipTM=0.157 tol=16.1
2024-12-07 08:04:34,554 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=51.8 pTM=0.24 ipTM=0.172 tol=12.1
2024-12-07 08:05:01,491 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=52.8 pTM=0.247 ipTM=0.183 tol=11.4
2024-12-07 08:05:28,455 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=52.8 pTM=0.246 ipTM=0.197 tol=9.7
2024-12-07 08:05:55,378 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.4 pTM=0.248 ipTM=0.195 tol=7.71
2024-12-07 08:06:22,302 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=52.3 pTM=0.244 ipTM=0.196 tol=4.99
2024-12-07 08:06:49,289 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=52.5 pTM=0.245 ipTM=0.193 tol=5.64
2024-12-07 08:07:16,220 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=52.3 pTM=0.242 ipTM=0.193 tol=4.75
2024-12-07 08:07:43,062 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=52.3 pTM=0.244 ipTM=0.203 tol=6.15
2024-12-07 08:08:09,931 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=52.6 pTM=0.246 ipTM=0.215 tol=8.19
2024-12-07 08:08:36,782 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=52.3 pTM=0.248 ipTM=0.209 tol=9.48
2024-12-07 08:09:03,654 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=52.5 pTM=0.249 ipTM=0.211 tol=3.45
2024-12-07 08:09:30,536 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=52.3 pTM=0.249 ipTM=0.207 tol=2.41
2024-12-07 08:09:57,443 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=52.2 pTM=0.247 ipTM=0.205 tol=3.52
2024-12-07 08:10:24,351 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=52.5 pTM=0.253 ipTM=0.204 tol=7.04
2024-12-07 08:10:51,239 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=52.6 pTM=0.252 ipTM=0.212 tol=3.84
2024-12-07 08:11:18,137 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=52.7 pTM=0.252 ipTM=0.213 tol=1.76
2024-12-07 08:11:45,057 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=52.5 pTM=0.25 ipTM=0.216 tol=5.86
2024-12-07 08:12:11,985 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=52.5 pTM=0.25 ipTM=0.213 tol=6.27
2024-12-07 08:12:38,903 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=52.4 pTM=0.248 ipTM=0.219 tol=6.25
2024-12-07 08:13:05,758 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=52.5 pTM=0.25 ipTM=0.224 tol=8.9
2024-12-07 08:13:32,705 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=52.3 pTM=0.248 ipTM=0.221 tol=9.12
2024-12-07 08:13:59,614 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=52.4 pTM=0.253 ipTM=0.212 tol=4.66
2024-12-07 08:14:26,489 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=52.4 pTM=0.248 ipTM=0.216 tol=6.24
2024-12-07 08:14:53,386 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=52.7 pTM=0.25 ipTM=0.222 tol=9.96
2024-12-07 08:15:20,299 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=52.5 pTM=0.25 ipTM=0.227 tol=7.52
2024-12-07 08:15:47,182 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=52.7 pTM=0.257 ipTM=0.228 tol=4.2
2024-12-07 08:16:14,086 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=52.6 pTM=0.254 ipTM=0.224 tol=5.25
2024-12-07 08:16:41,004 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=52.6 pTM=0.253 ipTM=0.216 tol=9.7
2024-12-07 08:17:07,917 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=52.5 pTM=0.248 ipTM=0.212 tol=7.83
2024-12-07 08:17:07,918 alphafold2_multimer_v3_model_4_seed_000 took 834.3s (30 recycles)
2024-12-07 08:17:35,528 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=51.4 pTM=0.256 ipTM=0.165
2024-12-07 08:18:02,431 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=51 pTM=0.263 ipTM=0.172 tol=22.7
2024-12-07 08:18:29,344 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=52.7 pTM=0.251 ipTM=0.15 tol=11.9
2024-12-07 08:18:56,234 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=53.3 pTM=0.253 ipTM=0.154 tol=12.5
2024-12-07 08:19:23,113 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=53.7 pTM=0.252 ipTM=0.165 tol=6.32
2024-12-07 08:19:49,984 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=53.5 pTM=0.252 ipTM=0.154 tol=5.82
2024-12-07 08:20:16,935 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=54.1 pTM=0.249 ipTM=0.149 tol=7.44
2024-12-07 08:20:43,867 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=54.1 pTM=0.247 ipTM=0.146 tol=4.77
2024-12-07 08:21:10,788 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=53.8 pTM=0.247 ipTM=0.145 tol=9.19
2024-12-07 08:21:37,695 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=53.9 pTM=0.248 ipTM=0.147 tol=5.19
2024-12-07 08:22:04,604 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=54.1 pTM=0.253 ipTM=0.16 tol=4.51
2024-12-07 08:22:31,528 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=53.9 pTM=0.254 ipTM=0.162 tol=9.87
2024-12-07 08:22:58,441 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=54.2 pTM=0.257 ipTM=0.17 tol=4.54
2024-12-07 08:23:25,365 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=54.2 pTM=0.257 ipTM=0.174 tol=4.92
2024-12-07 08:23:52,287 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=54.1 pTM=0.255 ipTM=0.169 tol=5.87
2024-12-07 08:24:19,202 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=54 pTM=0.261 ipTM=0.19 tol=2.85
2024-12-07 08:24:46,108 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=53.9 pTM=0.259 ipTM=0.182 tol=8.75
2024-12-07 08:25:13,022 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=54.1 pTM=0.262 ipTM=0.19 tol=10.1
2024-12-07 08:25:39,922 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=54 pTM=0.26 ipTM=0.187 tol=3.79
2024-12-07 08:26:06,833 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=54.2 pTM=0.259 ipTM=0.177 tol=3.66
2024-12-07 08:26:33,717 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=54 pTM=0.256 ipTM=0.174 tol=3.01
2024-12-07 08:27:00,583 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=54.1 pTM=0.258 ipTM=0.185 tol=8.9
2024-12-07 08:27:27,345 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=54 pTM=0.255 ipTM=0.176 tol=9.66
2024-12-07 08:27:54,107 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=54 pTM=0.26 ipTM=0.181 tol=7.75
2024-12-07 08:28:20,855 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=54.1 pTM=0.258 ipTM=0.179 tol=7.9
2024-12-07 08:28:47,558 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=54.1 pTM=0.26 ipTM=0.182 tol=4.21
2024-12-07 08:29:14,290 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=53.9 pTM=0.259 ipTM=0.179 tol=3.58
2024-12-07 08:29:41,065 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=54 pTM=0.264 ipTM=0.192 tol=9.8
2024-12-07 08:30:07,848 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=54.1 pTM=0.272 ipTM=0.227 tol=9.45
2024-12-07 08:30:34,629 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=53.9 pTM=0.276 ipTM=0.228 tol=4.87
2024-12-07 08:31:01,409 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=54.2 pTM=0.276 ipTM=0.222 tol=4.32
2024-12-07 08:31:01,410 alphafold2_multimer_v3_model_5_seed_000 took 832.8s (30 recycles)
2024-12-07 08:31:02,106 reranking models by 'multimer' metric
2024-12-07 08:31:03,322 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 08:32:35,173 Relaxation took 93.1s
2024-12-07 08:32:35,173 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=53.7 pTM=0.306 ipTM=0.271
2024-12-07 08:34:22,567 Relaxation took 107.4s
2024-12-07 08:34:22,567 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=54.2 pTM=0.276 ipTM=0.222
2024-12-07 08:35:38,665 Relaxation took 76.1s
2024-12-07 08:35:38,665 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=52.5 pTM=0.248 ipTM=0.212
2024-12-07 08:36:58,834 Relaxation took 80.2s
2024-12-07 08:36:58,834 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=54.1 pTM=0.26 ipTM=0.161
2024-12-07 08:38:15,973 Relaxation took 77.1s
2024-12-07 08:38:15,973 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=52.6 pTM=0.236 ipTM=0.154
2024-12-07 08:38:18,245 Done