2024-12-07 07:26:56,692 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 07:26:57,004 Running on GPU
2024-12-07 07:27:01,072 Found 6 citations for tools or databases
2024-12-07 07:27:01,072 Query 1/1: MUL1_ATP1A1 (length 1375)
2024-12-07 07:27:01,364 Sleeping for 5s. Reason: PENDING
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2024-12-07 07:33:43,887 Sleeping for 10s. Reason: PENDING
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2024-12-07 07:39:32,495 Setting max_seq=508, max_extra_seq=2048
2024-12-07 07:43:01,249 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.8 pTM=0.631 ipTM=0.182
2024-12-07 07:43:51,409 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.8 pTM=0.633 ipTM=0.177 tol=4.16
2024-12-07 07:44:41,643 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.8 pTM=0.637 ipTM=0.201 tol=7.31
2024-12-07 07:45:32,010 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.9 pTM=0.631 ipTM=0.182 tol=2.59
2024-12-07 07:46:22,399 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.9 pTM=0.63 ipTM=0.182 tol=1.19
2024-12-07 07:47:12,812 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.1 pTM=0.632 ipTM=0.187 tol=1.31
2024-12-07 07:48:03,222 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.9 pTM=0.629 ipTM=0.185 tol=0.859
2024-12-07 07:48:53,641 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.2 pTM=0.632 ipTM=0.192 tol=1.42
2024-12-07 07:49:44,050 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.1 pTM=0.628 ipTM=0.186 tol=1.48
2024-12-07 07:50:34,473 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80 pTM=0.628 ipTM=0.189 tol=0.805
2024-12-07 07:51:24,937 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.2 pTM=0.629 ipTM=0.188 tol=1.36
2024-12-07 07:52:15,384 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=79.9 pTM=0.629 ipTM=0.189 tol=1.08
2024-12-07 07:53:05,825 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80 pTM=0.628 ipTM=0.184 tol=1.08
2024-12-07 07:53:56,296 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=79.9 pTM=0.629 ipTM=0.186 tol=1.48
2024-12-07 07:54:46,765 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.1 pTM=0.631 ipTM=0.184 tol=0.785
2024-12-07 07:55:37,231 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=80.1 pTM=0.631 ipTM=0.182 tol=0.592
2024-12-07 07:56:27,659 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=79.9 pTM=0.629 ipTM=0.187 tol=0.501
2024-12-07 07:57:18,080 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=80 pTM=0.63 ipTM=0.183 tol=0.682
2024-12-07 07:58:08,494 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=80 pTM=0.629 ipTM=0.183 tol=0.972
2024-12-07 07:58:58,934 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=80 pTM=0.629 ipTM=0.184 tol=0.375
2024-12-07 07:58:58,935 alphafold2_multimer_v3_model_1_seed_000 took 1161.8s (19 recycles)
2024-12-07 07:59:50,451 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.4 pTM=0.588 ipTM=0.199
2024-12-07 08:00:40,842 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.7 pTM=0.613 ipTM=0.202 tol=4.24
2024-12-07 08:01:31,315 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.9 pTM=0.609 ipTM=0.186 tol=13.9
2024-12-07 08:02:21,804 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.4 pTM=0.609 ipTM=0.196 tol=6.14
2024-12-07 08:03:12,330 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.2 pTM=0.609 ipTM=0.2 tol=4.94
2024-12-07 08:04:02,806 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.3 pTM=0.611 ipTM=0.223 tol=9.01
2024-12-07 08:04:53,235 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78 pTM=0.621 ipTM=0.281 tol=4.35
2024-12-07 08:05:43,640 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=77.8 pTM=0.623 ipTM=0.294 tol=1.17
2024-12-07 08:06:34,051 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.1 pTM=0.627 ipTM=0.3 tol=1.08
2024-12-07 08:07:24,439 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.1 pTM=0.627 ipTM=0.312 tol=0.486
2024-12-07 08:07:24,440 alphafold2_multimer_v3_model_2_seed_000 took 504.4s (9 recycles)
2024-12-07 08:08:16,060 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.2 pTM=0.607 ipTM=0.17
2024-12-07 08:09:06,538 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.9 pTM=0.627 ipTM=0.188 tol=9.71
2024-12-07 08:09:57,002 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.6 pTM=0.628 ipTM=0.226 tol=4.88
2024-12-07 08:10:47,477 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.8 pTM=0.63 ipTM=0.226 tol=1.39
2024-12-07 08:11:37,955 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.5 pTM=0.631 ipTM=0.23 tol=0.74
2024-12-07 08:12:28,467 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.8 pTM=0.629 ipTM=0.226 tol=0.462
2024-12-07 08:12:28,469 alphafold2_multimer_v3_model_3_seed_000 took 302.9s (5 recycles)
2024-12-07 08:13:20,147 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.1 pTM=0.604 ipTM=0.213
2024-12-07 08:14:10,556 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80 pTM=0.654 ipTM=0.254 tol=3.4
2024-12-07 08:15:01,001 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.6 pTM=0.636 ipTM=0.264 tol=2
2024-12-07 08:15:51,460 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.4 pTM=0.63 ipTM=0.243 tol=1.15
2024-12-07 08:16:41,918 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.6 pTM=0.635 ipTM=0.27 tol=1.97
2024-12-07 08:17:32,373 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.2 pTM=0.63 ipTM=0.259 tol=0.661
2024-12-07 08:18:22,837 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.5 pTM=0.634 ipTM=0.255 tol=0.386
2024-12-07 08:18:22,838 alphafold2_multimer_v3_model_4_seed_000 took 353.1s (6 recycles)
2024-12-07 08:19:14,460 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.2 pTM=0.604 ipTM=0.166
2024-12-07 08:20:04,962 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.4 pTM=0.617 ipTM=0.177 tol=6.92
2024-12-07 08:20:55,433 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.9 pTM=0.617 ipTM=0.211 tol=7.5
2024-12-07 08:21:45,857 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.4 pTM=0.622 ipTM=0.226 tol=2.39
2024-12-07 08:22:36,322 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.4 pTM=0.627 ipTM=0.221 tol=0.794
2024-12-07 08:23:26,766 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.5 pTM=0.628 ipTM=0.224 tol=0.794
2024-12-07 08:24:17,211 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.4 pTM=0.63 ipTM=0.227 tol=0.604
2024-12-07 08:25:07,668 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.8 pTM=0.634 ipTM=0.233 tol=0.759
2024-12-07 08:25:58,118 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.5 pTM=0.631 ipTM=0.229 tol=0.747
2024-12-07 08:26:48,551 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.4 pTM=0.631 ipTM=0.232 tol=0.407
2024-12-07 08:26:48,552 alphafold2_multimer_v3_model_5_seed_000 took 504.6s (9 recycles)
2024-12-07 08:26:49,685 reranking models by 'multimer' metric
2024-12-07 08:26:53,338 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 08:28:01,649 Relaxation took 72.0s
2024-12-07 08:28:01,649 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.1 pTM=0.627 ipTM=0.312
2024-12-07 08:30:36,209 Relaxation took 154.6s
2024-12-07 08:30:36,209 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.5 pTM=0.634 ipTM=0.255
2024-12-07 08:33:06,982 Relaxation took 150.8s
2024-12-07 08:33:06,982 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.4 pTM=0.631 ipTM=0.232
2024-12-07 08:35:54,549 Relaxation took 167.6s
2024-12-07 08:35:54,549 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.8 pTM=0.629 ipTM=0.226
2024-12-07 08:38:06,966 Relaxation took 132.4s
2024-12-07 08:38:06,966 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80 pTM=0.629 ipTM=0.184
2024-12-07 08:38:09,758 Done