2024-12-07 07:38:14,029 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 07:38:14,363 Running on GPU
2024-12-07 07:38:17,946 Found 6 citations for tools or databases
2024-12-07 07:38:17,946 Query 1/1: MUL1_RANBP17 (length 1440)
2024-12-07 07:38:18,225 Sleeping for 10s. Reason: PENDING
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2024-12-07 07:40:17,337 Sleeping for 10s. Reason: PENDING
2024-12-07 07:40:27,601 Sleeping for 7s. Reason: RUNNING
2024-12-07 07:40:34,860 Sleeping for 10s. Reason: RUNNING
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2024-12-07 07:41:20,422 Sleeping for 10s. Reason: RUNNING
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2024-12-07 07:41:54,425 Setting max_seq=508, max_extra_seq=2048
2024-12-07 07:44:43,066 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.8 pTM=0.661 ipTM=0.281
2024-12-07 07:45:37,247 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.3 pTM=0.664 ipTM=0.188 tol=5.2
2024-12-07 07:46:31,470 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.3 pTM=0.659 ipTM=0.181 tol=2.54
2024-12-07 07:47:25,703 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.6 pTM=0.654 ipTM=0.177 tol=1.84
2024-12-07 07:48:19,946 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.9 pTM=0.655 ipTM=0.177 tol=0.678
2024-12-07 07:49:14,191 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.8 pTM=0.653 ipTM=0.176 tol=1.21
2024-12-07 07:50:08,444 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.9 pTM=0.654 ipTM=0.177 tol=0.641
2024-12-07 07:51:02,706 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.1 pTM=0.652 ipTM=0.176 tol=0.783
2024-12-07 07:51:56,959 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81 pTM=0.655 ipTM=0.176 tol=0.602
2024-12-07 07:52:51,216 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=81.1 pTM=0.654 ipTM=0.175 tol=0.621
2024-12-07 07:53:45,462 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=81.2 pTM=0.655 ipTM=0.177 tol=1.54
2024-12-07 07:54:39,711 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=80.9 pTM=0.652 ipTM=0.172 tol=0.696
2024-12-07 07:55:33,967 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=81 pTM=0.654 ipTM=0.175 tol=1.26
2024-12-07 07:56:28,219 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=80.9 pTM=0.654 ipTM=0.173 tol=1.23
2024-12-07 07:57:22,462 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.9 pTM=0.655 ipTM=0.176 tol=1.52
2024-12-07 07:58:16,713 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=81 pTM=0.655 ipTM=0.175 tol=0.7
2024-12-07 07:59:10,954 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=81.1 pTM=0.655 ipTM=0.176 tol=0.771
2024-12-07 08:00:05,191 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=81 pTM=0.655 ipTM=0.173 tol=1.28
2024-12-07 08:00:59,418 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=81.2 pTM=0.657 ipTM=0.179 tol=1.61
2024-12-07 08:01:53,656 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=81.1 pTM=0.654 ipTM=0.176 tol=1.91
2024-12-07 08:02:47,887 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=81.1 pTM=0.656 ipTM=0.174 tol=1.53
2024-12-07 08:03:42,112 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=80.9 pTM=0.651 ipTM=0.174 tol=1.08
2024-12-07 08:04:36,337 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=80.9 pTM=0.65 ipTM=0.178 tol=1.33
2024-12-07 08:05:30,558 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=81.2 pTM=0.652 ipTM=0.171 tol=1.36
2024-12-07 08:06:24,786 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=81.2 pTM=0.653 ipTM=0.176 tol=1.84
2024-12-07 08:07:19,042 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=81.1 pTM=0.651 ipTM=0.174 tol=1.09
2024-12-07 08:08:13,276 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=81.1 pTM=0.652 ipTM=0.176 tol=1.32
2024-12-07 08:09:07,513 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=81 pTM=0.652 ipTM=0.173 tol=1.1
2024-12-07 08:10:01,783 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=81 pTM=0.653 ipTM=0.176 tol=0.986
2024-12-07 08:10:56,027 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=80.8 pTM=0.649 ipTM=0.175 tol=0.851
2024-12-07 08:11:50,295 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=81 pTM=0.653 ipTM=0.177 tol=1.04
2024-12-07 08:11:50,296 alphafold2_multimer_v3_model_1_seed_000 took 1790.9s (30 recycles)
2024-12-07 08:12:45,797 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.2 pTM=0.67 ipTM=0.22
2024-12-07 08:13:40,167 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.9 pTM=0.676 ipTM=0.18 tol=5.31
2024-12-07 08:14:34,507 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.6 pTM=0.677 ipTM=0.186 tol=4.5
2024-12-07 08:15:28,831 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.9 pTM=0.674 ipTM=0.187 tol=2.58
2024-12-07 08:16:23,164 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.5 pTM=0.675 ipTM=0.186 tol=1.64
2024-12-07 08:17:17,491 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.6 pTM=0.673 ipTM=0.189 tol=1.53
2024-12-07 08:18:11,816 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.8 pTM=0.675 ipTM=0.186 tol=1.07
2024-12-07 08:19:06,136 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.8 pTM=0.671 ipTM=0.183 tol=0.805
2024-12-07 08:20:00,459 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.9 pTM=0.674 ipTM=0.186 tol=1.17
2024-12-07 08:20:54,758 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=81.9 pTM=0.674 ipTM=0.184 tol=1.04
2024-12-07 08:21:49,064 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=81.8 pTM=0.672 ipTM=0.183 tol=0.594
2024-12-07 08:22:43,378 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.9 pTM=0.675 ipTM=0.183 tol=0.634
2024-12-07 08:23:37,690 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.9 pTM=0.674 ipTM=0.184 tol=0.569
2024-12-07 08:24:31,957 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81.6 pTM=0.671 ipTM=0.185 tol=0.728
2024-12-07 08:25:26,240 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=81.7 pTM=0.671 ipTM=0.184 tol=0.58
2024-12-07 08:26:20,540 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=81.8 pTM=0.674 ipTM=0.186 tol=0.555
2024-12-07 08:27:14,816 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=81.9 pTM=0.672 ipTM=0.185 tol=0.629
2024-12-07 08:28:09,121 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=81.8 pTM=0.673 ipTM=0.183 tol=0.564
2024-12-07 08:29:03,424 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=81.9 pTM=0.671 ipTM=0.185 tol=0.825
2024-12-07 08:29:57,715 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=81.8 pTM=0.671 ipTM=0.184 tol=0.577
2024-12-07 08:30:52,026 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=81.8 pTM=0.671 ipTM=0.185 tol=0.738
2024-12-07 08:31:46,296 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=81.8 pTM=0.668 ipTM=0.182 tol=1.29
2024-12-07 08:32:40,593 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=81.8 pTM=0.669 ipTM=0.183 tol=0.659
2024-12-07 08:33:34,907 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=81.9 pTM=0.671 ipTM=0.184 tol=0.859
2024-12-07 08:34:29,241 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=81.9 pTM=0.672 ipTM=0.187 tol=0.816
2024-12-07 08:35:23,541 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=81.8 pTM=0.669 ipTM=0.185 tol=0.832
2024-12-07 08:36:17,869 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=81.8 pTM=0.673 ipTM=0.186 tol=0.919
2024-12-07 08:37:12,184 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=81.8 pTM=0.673 ipTM=0.187 tol=0.629
2024-12-07 08:38:06,496 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=81.7 pTM=0.672 ipTM=0.186 tol=1.21
2024-12-07 08:39:00,824 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=81.8 pTM=0.671 ipTM=0.187 tol=0.812
2024-12-07 08:39:55,161 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=81.7 pTM=0.67 ipTM=0.183 tol=1.43
2024-12-07 08:39:55,162 alphafold2_multimer_v3_model_2_seed_000 took 1683.6s (30 recycles)
2024-12-07 08:40:50,613 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80.1 pTM=0.662 ipTM=0.288
2024-12-07 08:41:44,828 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.2 pTM=0.666 ipTM=0.178 tol=10.6
2024-12-07 08:42:39,012 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.1 pTM=0.662 ipTM=0.177 tol=5.93
2024-12-07 08:43:33,177 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.3 pTM=0.66 ipTM=0.186 tol=8.32
2024-12-07 08:44:27,386 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.4 pTM=0.666 ipTM=0.195 tol=8.44
2024-12-07 08:45:21,548 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.9 pTM=0.667 ipTM=0.207 tol=4.67
2024-12-07 08:46:15,716 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=81.4 pTM=0.667 ipTM=0.202 tol=2.39
2024-12-07 08:47:09,858 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=82 pTM=0.671 ipTM=0.219 tol=2.88
2024-12-07 08:48:04,010 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=82.1 pTM=0.673 ipTM=0.227 tol=0.53
2024-12-07 08:48:58,159 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=82.2 pTM=0.674 ipTM=0.228 tol=0.299
2024-12-07 08:48:58,160 alphafold2_multimer_v3_model_3_seed_000 took 541.8s (9 recycles)
2024-12-07 08:49:53,613 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.2 pTM=0.673 ipTM=0.256
2024-12-07 08:50:47,896 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.4 pTM=0.699 ipTM=0.413 tol=11.7
2024-12-07 08:51:42,174 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=81.4 pTM=0.684 ipTM=0.188 tol=5.98
2024-12-07 08:52:36,446 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=81.7 pTM=0.683 ipTM=0.193 tol=3.65
2024-12-07 08:53:30,713 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.1 pTM=0.688 ipTM=0.211 tol=1.48
2024-12-07 08:54:24,982 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=82.2 pTM=0.689 ipTM=0.214 tol=1.07
2024-12-07 08:55:19,236 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=82.9 pTM=0.699 ipTM=0.429 tol=1.9
2024-12-07 08:56:13,533 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83.5 pTM=0.704 ipTM=0.516 tol=2.46
2024-12-07 08:57:07,826 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.8 pTM=0.705 ipTM=0.569 tol=1.69
2024-12-07 08:58:02,106 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.5 pTM=0.706 ipTM=0.587 tol=1.66
2024-12-07 08:58:56,363 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.7 pTM=0.706 ipTM=0.586 tol=1.69
2024-12-07 08:59:50,598 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.5 pTM=0.701 ipTM=0.578 tol=1.2
2024-12-07 09:00:44,836 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.8 pTM=0.706 ipTM=0.602 tol=0.597
2024-12-07 09:01:39,061 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=83.8 pTM=0.707 ipTM=0.603 tol=0.74
2024-12-07 09:02:33,306 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=83.7 pTM=0.705 ipTM=0.601 tol=1.23
2024-12-07 09:03:27,535 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=83.6 pTM=0.705 ipTM=0.596 tol=0.626
2024-12-07 09:04:21,776 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=84.1 pTM=0.707 ipTM=0.6 tol=1.72
2024-12-07 09:05:16,014 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=83.7 pTM=0.707 ipTM=0.583 tol=1.37
2024-12-07 09:06:10,273 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.2 pTM=0.706 ipTM=0.583 tol=4.71
2024-12-07 09:07:04,510 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=83.6 pTM=0.706 ipTM=0.586 tol=4.09
2024-12-07 09:07:58,749 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=83.9 pTM=0.706 ipTM=0.597 tol=1.2
2024-12-07 09:08:52,959 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=83.8 pTM=0.703 ipTM=0.573 tol=0.732
2024-12-07 09:09:47,194 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=83.7 pTM=0.703 ipTM=0.58 tol=1.41
2024-12-07 09:10:41,433 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=83.6 pTM=0.701 ipTM=0.551 tol=0.49
2024-12-07 09:10:41,434 alphafold2_multimer_v3_model_4_seed_000 took 1302.0s (23 recycles)
2024-12-07 09:11:36,834 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.2 pTM=0.679 ipTM=0.276
2024-12-07 09:12:31,087 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.7 pTM=0.67 ipTM=0.175 tol=10.4
2024-12-07 09:13:25,407 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.4 pTM=0.673 ipTM=0.166 tol=8.12
2024-12-07 09:14:19,737 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.1 pTM=0.672 ipTM=0.162 tol=3.68
2024-12-07 09:15:14,039 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.6 pTM=0.68 ipTM=0.175 tol=15.5
2024-12-07 09:16:08,403 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.3 pTM=0.681 ipTM=0.185 tol=4.67
2024-12-07 09:17:02,698 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.2 pTM=0.683 ipTM=0.186 tol=1.45
2024-12-07 09:17:56,966 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.1 pTM=0.682 ipTM=0.185 tol=1.08
2024-12-07 09:18:51,254 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80 pTM=0.683 ipTM=0.184 tol=0.568
2024-12-07 09:19:45,529 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.3 pTM=0.683 ipTM=0.184 tol=0.907
2024-12-07 09:20:39,793 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.2 pTM=0.681 ipTM=0.181 tol=1.4
2024-12-07 09:21:34,171 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.2 pTM=0.681 ipTM=0.184 tol=0.801
2024-12-07 09:22:28,480 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.1 pTM=0.683 ipTM=0.184 tol=1.04
2024-12-07 09:23:22,770 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80.1 pTM=0.683 ipTM=0.185 tol=0.936
2024-12-07 09:24:17,046 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.9 pTM=0.682 ipTM=0.185 tol=0.715
2024-12-07 09:25:11,316 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.9 pTM=0.683 ipTM=0.185 tol=0.475
2024-12-07 09:25:11,318 alphafold2_multimer_v3_model_5_seed_000 took 868.6s (15 recycles)
2024-12-07 09:25:12,557 reranking models by 'multimer' metric
2024-12-07 09:25:13,997 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 09:26:43,093 Relaxation took 90.5s
2024-12-07 09:26:43,093 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.6 pTM=0.701 ipTM=0.551
2024-12-07 09:27:47,102 Relaxation took 64.0s
2024-12-07 09:27:47,102 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.2 pTM=0.674 ipTM=0.228
2024-12-07 09:31:05,677 Relaxation took 198.6s
2024-12-07 09:31:05,677 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.9 pTM=0.683 ipTM=0.185
2024-12-07 09:33:57,550 Relaxation took 171.9s
2024-12-07 09:33:57,550 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.7 pTM=0.67 ipTM=0.183
2024-12-07 09:36:23,601 Relaxation took 146.0s
2024-12-07 09:36:23,601 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81 pTM=0.653 ipTM=0.177
2024-12-07 09:36:26,889 Done