2024-12-07 08:16:19,929 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 08:16:20,244 Running on GPU
2024-12-07 08:16:24,178 Found 6 citations for tools or databases
2024-12-07 08:16:24,179 Query 1/1: NACC1_ITLN1 (length 840)
2024-12-07 08:16:24,474 Sleeping for 7s. Reason: PENDING
2024-12-07 08:16:31,734 Sleeping for 7s. Reason: PENDING
2024-12-07 08:16:38,988 Sleeping for 6s. Reason: PENDING
2024-12-07 08:16:45,241 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:16:50,494 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:16:58,752 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:17:09,010 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:17:14,271 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:17:23,530 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:17:28,787 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:17:34,048 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:17:40,306 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:17:46,569 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:17:53,829 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:18:04,095 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:18:10,359 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:18:20,626 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:18:31,403 Sleeping for 10s. Reason: PENDING
2024-12-07 08:18:41,667 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:18:47,934 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:18:58,191 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:19:08,465 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:19:17,726 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:19:23,980 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:19:33,236 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:19:41,501 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:19:50,756 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:20:02,594 Setting max_seq=508, max_extra_seq=2048
2024-12-07 08:22:13,538 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=56.8 pTM=0.411 ipTM=0.16
2024-12-07 08:22:27,074 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=58 pTM=0.417 ipTM=0.17 tol=19.8
2024-12-07 08:22:40,619 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=58 pTM=0.422 ipTM=0.157 tol=15.2
2024-12-07 08:22:54,193 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=59.9 pTM=0.42 ipTM=0.17 tol=10.5
2024-12-07 08:23:07,794 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=59.6 pTM=0.419 ipTM=0.154 tol=6.53
2024-12-07 08:23:21,396 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=59.5 pTM=0.424 ipTM=0.164 tol=5.31
2024-12-07 08:23:35,019 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=59.7 pTM=0.421 ipTM=0.147 tol=9.49
2024-12-07 08:23:48,640 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=59.6 pTM=0.425 ipTM=0.157 tol=6.72
2024-12-07 08:24:02,295 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=59.9 pTM=0.423 ipTM=0.154 tol=3.99
2024-12-07 08:24:15,977 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.1 pTM=0.423 ipTM=0.158 tol=4.21
2024-12-07 08:24:29,639 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=60 pTM=0.422 ipTM=0.158 tol=4.44
2024-12-07 08:24:43,290 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=59.9 pTM=0.427 ipTM=0.168 tol=4.08
2024-12-07 08:24:56,945 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=60.2 pTM=0.424 ipTM=0.16 tol=5.16
2024-12-07 08:25:10,589 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=60.3 pTM=0.424 ipTM=0.162 tol=4.35
2024-12-07 08:25:24,238 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=60 pTM=0.424 ipTM=0.16 tol=8.1
2024-12-07 08:25:37,884 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=60.1 pTM=0.426 ipTM=0.168 tol=4.92
2024-12-07 08:25:51,526 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60 pTM=0.425 ipTM=0.165 tol=6.66
2024-12-07 08:26:05,169 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=60.2 pTM=0.426 ipTM=0.165 tol=2.29
2024-12-07 08:26:18,817 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=60.6 pTM=0.425 ipTM=0.163 tol=4.25
2024-12-07 08:26:32,472 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=60.3 pTM=0.429 ipTM=0.17 tol=6.7
2024-12-07 08:26:46,118 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=60.2 pTM=0.426 ipTM=0.16 tol=1.75
2024-12-07 08:26:59,754 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=59.9 pTM=0.427 ipTM=0.169 tol=2.65
2024-12-07 08:27:13,407 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=60.4 pTM=0.427 ipTM=0.164 tol=2.26
2024-12-07 08:27:27,052 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=60.2 pTM=0.427 ipTM=0.172 tol=2.49
2024-12-07 08:27:40,700 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.5 pTM=0.427 ipTM=0.163 tol=1.71
2024-12-07 08:27:54,352 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=60.2 pTM=0.427 ipTM=0.165 tol=4.3
2024-12-07 08:28:07,998 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.1 pTM=0.429 ipTM=0.167 tol=3.77
2024-12-07 08:28:21,650 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=60.1 pTM=0.427 ipTM=0.159 tol=4.06
2024-12-07 08:28:35,303 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=60.2 pTM=0.428 ipTM=0.162 tol=5.18
2024-12-07 08:28:48,960 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=60.4 pTM=0.426 ipTM=0.154 tol=2.02
2024-12-07 08:29:02,614 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=60.2 pTM=0.428 ipTM=0.154 tol=4.73
2024-12-07 08:29:02,615 alphafold2_multimer_v3_model_1_seed_000 took 534.6s (30 recycles)
2024-12-07 08:29:16,684 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=56.8 pTM=0.419 ipTM=0.151
2024-12-07 08:29:30,366 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=58.9 pTM=0.429 ipTM=0.165 tol=13.4
2024-12-07 08:29:44,073 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=59.7 pTM=0.427 ipTM=0.151 tol=11.4
2024-12-07 08:29:57,785 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=60.3 pTM=0.429 ipTM=0.157 tol=9.57
2024-12-07 08:30:11,529 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.7 pTM=0.424 ipTM=0.144 tol=5.6
2024-12-07 08:30:25,288 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.6 pTM=0.426 ipTM=0.145 tol=5.02
2024-12-07 08:30:39,024 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=61 pTM=0.425 ipTM=0.146 tol=3.78
2024-12-07 08:30:52,733 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.8 pTM=0.432 ipTM=0.162 tol=3.64
2024-12-07 08:31:06,446 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=61 pTM=0.429 ipTM=0.161 tol=7.56
2024-12-07 08:31:20,149 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=61.1 pTM=0.428 ipTM=0.157 tol=3.83
2024-12-07 08:31:33,850 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=61.2 pTM=0.427 ipTM=0.149 tol=4.19
2024-12-07 08:31:47,549 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.6 pTM=0.43 ipTM=0.155 tol=3.8
2024-12-07 08:32:01,250 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.9 pTM=0.428 ipTM=0.153 tol=4.65
2024-12-07 08:32:14,943 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=61.1 pTM=0.428 ipTM=0.157 tol=5.4
2024-12-07 08:32:28,638 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.9 pTM=0.428 ipTM=0.158 tol=5.69
2024-12-07 08:32:42,336 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=61.1 pTM=0.43 ipTM=0.17 tol=11.3
2024-12-07 08:32:56,035 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=61 pTM=0.428 ipTM=0.163 tol=7.86
2024-12-07 08:33:09,741 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=61.1 pTM=0.431 ipTM=0.165 tol=3.41
2024-12-07 08:33:23,518 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=61.1 pTM=0.43 ipTM=0.17 tol=4.69
2024-12-07 08:33:37,227 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=61 pTM=0.432 ipTM=0.175 tol=3.6
2024-12-07 08:33:50,922 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61 pTM=0.432 ipTM=0.179 tol=4.67
2024-12-07 08:34:04,609 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.9 pTM=0.427 ipTM=0.15 tol=8.31
2024-12-07 08:34:18,306 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=61.1 pTM=0.428 ipTM=0.151 tol=9.12
2024-12-07 08:34:32,002 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.9 pTM=0.428 ipTM=0.15 tol=7.75
2024-12-07 08:34:45,698 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=61 pTM=0.426 ipTM=0.148 tol=6.82
2024-12-07 08:34:59,407 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=61.5 pTM=0.425 ipTM=0.147 tol=4.87
2024-12-07 08:35:13,111 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61.1 pTM=0.426 ipTM=0.149 tol=5.56
2024-12-07 08:35:26,816 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=61.1 pTM=0.429 ipTM=0.153 tol=3.2
2024-12-07 08:35:40,523 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=61 pTM=0.434 ipTM=0.192 tol=2.61
2024-12-07 08:35:54,225 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=61.1 pTM=0.426 ipTM=0.149 tol=4.04
2024-12-07 08:36:07,940 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=61.2 pTM=0.426 ipTM=0.149 tol=4.84
2024-12-07 08:36:07,941 alphafold2_multimer_v3_model_2_seed_000 took 424.9s (30 recycles)
2024-12-07 08:36:22,070 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=56.9 pTM=0.409 ipTM=0.17
2024-12-07 08:36:35,889 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=60.8 pTM=0.42 ipTM=0.164 tol=21.4
2024-12-07 08:36:49,653 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=60.8 pTM=0.437 ipTM=0.226 tol=13.5
2024-12-07 08:37:03,437 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60.9 pTM=0.417 ipTM=0.143 tol=11.9
2024-12-07 08:37:17,199 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=60.7 pTM=0.43 ipTM=0.178 tol=11.6
2024-12-07 08:37:30,970 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.7 pTM=0.424 ipTM=0.147 tol=8.12
2024-12-07 08:37:44,718 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.6 pTM=0.431 ipTM=0.17 tol=9.27
2024-12-07 08:37:58,484 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.9 pTM=0.428 ipTM=0.151 tol=9.41
2024-12-07 08:38:12,246 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.8 pTM=0.432 ipTM=0.188 tol=4.44
2024-12-07 08:38:26,020 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=61.2 pTM=0.423 ipTM=0.16 tol=6.08
2024-12-07 08:38:39,764 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.7 pTM=0.427 ipTM=0.166 tol=8.83
2024-12-07 08:38:53,514 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60.8 pTM=0.427 ipTM=0.156 tol=7.99
2024-12-07 08:39:07,255 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.8 pTM=0.432 ipTM=0.183 tol=6.14
2024-12-07 08:39:21,019 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=61.1 pTM=0.425 ipTM=0.152 tol=3.79
2024-12-07 08:39:34,813 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=60.9 pTM=0.429 ipTM=0.167 tol=3.28
2024-12-07 08:39:48,583 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61.1 pTM=0.427 ipTM=0.157 tol=4
2024-12-07 08:40:02,326 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.9 pTM=0.429 ipTM=0.171 tol=6.22
2024-12-07 08:40:16,071 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=61.2 pTM=0.426 ipTM=0.151 tol=6.42
2024-12-07 08:40:29,807 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.9 pTM=0.431 ipTM=0.162 tol=6.93
2024-12-07 08:40:43,527 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=61 pTM=0.43 ipTM=0.159 tol=5.63
2024-12-07 08:40:57,249 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=60.8 pTM=0.431 ipTM=0.163 tol=4.56
2024-12-07 08:41:10,994 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=61.1 pTM=0.43 ipTM=0.16 tol=6.78
2024-12-07 08:41:24,723 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=60.8 pTM=0.432 ipTM=0.164 tol=3.16
2024-12-07 08:41:38,447 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=60.7 pTM=0.431 ipTM=0.16 tol=4.91
2024-12-07 08:41:52,174 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=60.9 pTM=0.428 ipTM=0.155 tol=7.38
2024-12-07 08:42:05,930 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=61.3 pTM=0.427 ipTM=0.161 tol=5.6
2024-12-07 08:42:19,656 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=60.6 pTM=0.435 ipTM=0.176 tol=9.02
2024-12-07 08:42:33,473 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.6 pTM=0.429 ipTM=0.16 tol=7.19
2024-12-07 08:42:47,216 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=60.8 pTM=0.43 ipTM=0.156 tol=9.19
2024-12-07 08:43:00,980 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=61 pTM=0.427 ipTM=0.16 tol=6.31
2024-12-07 08:43:14,722 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=60.7 pTM=0.429 ipTM=0.155 tol=3.81
2024-12-07 08:43:14,723 alphafold2_multimer_v3_model_3_seed_000 took 426.3s (30 recycles)
2024-12-07 08:43:28,826 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=55.6 pTM=0.445 ipTM=0.323
2024-12-07 08:43:42,532 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.9 pTM=0.429 ipTM=0.194 tol=24
2024-12-07 08:43:56,260 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58.9 pTM=0.426 ipTM=0.155 tol=14
2024-12-07 08:44:09,973 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=59.5 pTM=0.431 ipTM=0.163 tol=9.03
2024-12-07 08:44:23,682 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=59.2 pTM=0.429 ipTM=0.157 tol=5.03
2024-12-07 08:44:37,384 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=59.6 pTM=0.437 ipTM=0.17 tol=5.63
2024-12-07 08:44:51,068 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=60 pTM=0.436 ipTM=0.168 tol=4.25
2024-12-07 08:45:04,771 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=59.9 pTM=0.439 ipTM=0.174 tol=2.41
2024-12-07 08:45:18,479 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=60.1 pTM=0.437 ipTM=0.168 tol=2.54
2024-12-07 08:45:32,200 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=60.3 pTM=0.437 ipTM=0.169 tol=4.04
2024-12-07 08:45:45,909 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=59.9 pTM=0.436 ipTM=0.167 tol=6.08
2024-12-07 08:45:59,629 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=59.9 pTM=0.438 ipTM=0.17 tol=7.03
2024-12-07 08:46:13,349 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=60 pTM=0.438 ipTM=0.169 tol=5.31
2024-12-07 08:46:27,072 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=59.8 pTM=0.439 ipTM=0.171 tol=3.86
2024-12-07 08:46:40,782 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=59.8 pTM=0.438 ipTM=0.17 tol=2.29
2024-12-07 08:46:54,496 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=59.8 pTM=0.438 ipTM=0.17 tol=2.27
2024-12-07 08:47:08,215 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=59.6 pTM=0.438 ipTM=0.17 tol=1.79
2024-12-07 08:47:21,933 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=59.6 pTM=0.439 ipTM=0.172 tol=1.62
2024-12-07 08:47:35,646 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=59.7 pTM=0.438 ipTM=0.17 tol=1.71
2024-12-07 08:47:49,364 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=59.6 pTM=0.439 ipTM=0.17 tol=2.97
2024-12-07 08:48:03,076 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=59.5 pTM=0.44 ipTM=0.173 tol=1.52
2024-12-07 08:48:16,791 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=59.6 pTM=0.439 ipTM=0.172 tol=2.92
2024-12-07 08:48:30,502 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=59.4 pTM=0.439 ipTM=0.171 tol=2.21
2024-12-07 08:48:44,231 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=59.4 pTM=0.439 ipTM=0.171 tol=3.56
2024-12-07 08:48:57,964 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=59.3 pTM=0.439 ipTM=0.171 tol=3.68
2024-12-07 08:49:11,695 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=60.1 pTM=0.438 ipTM=0.169 tol=2.7
2024-12-07 08:49:25,416 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=59.4 pTM=0.439 ipTM=0.171 tol=4.61
2024-12-07 08:49:39,131 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=59.2 pTM=0.44 ipTM=0.173 tol=4.44
2024-12-07 08:49:52,840 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=59.4 pTM=0.439 ipTM=0.172 tol=4.51
2024-12-07 08:50:06,562 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.1 pTM=0.437 ipTM=0.169 tol=3.55
2024-12-07 08:50:20,282 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=59.4 pTM=0.439 ipTM=0.172 tol=3.71
2024-12-07 08:50:20,283 alphafold2_multimer_v3_model_4_seed_000 took 425.1s (30 recycles)
2024-12-07 08:50:34,383 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55.8 pTM=0.408 ipTM=0.15
2024-12-07 08:50:48,146 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59 pTM=0.42 ipTM=0.142 tol=11.8
2024-12-07 08:51:01,881 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.6 pTM=0.424 ipTM=0.148 tol=14.2
2024-12-07 08:51:15,652 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60 pTM=0.427 ipTM=0.15 tol=14.9
2024-12-07 08:51:29,421 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=59.1 pTM=0.429 ipTM=0.153 tol=12.7
2024-12-07 08:51:43,265 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=59.8 pTM=0.429 ipTM=0.156 tol=6.16
2024-12-07 08:51:57,053 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=61.2 pTM=0.428 ipTM=0.151 tol=10.9
2024-12-07 08:52:10,834 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=61 pTM=0.435 ipTM=0.162 tol=10.1
2024-12-07 08:52:24,614 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=61.6 pTM=0.429 ipTM=0.153 tol=7.92
2024-12-07 08:52:38,386 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.3 pTM=0.429 ipTM=0.153 tol=7.02
2024-12-07 08:52:52,154 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=61.1 pTM=0.432 ipTM=0.158 tol=11.1
2024-12-07 08:53:05,938 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60.9 pTM=0.433 ipTM=0.16 tol=13.3
2024-12-07 08:53:19,701 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=61.3 pTM=0.432 ipTM=0.157 tol=7.61
2024-12-07 08:53:33,454 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=61.3 pTM=0.431 ipTM=0.157 tol=6.88
2024-12-07 08:53:47,198 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=61 pTM=0.431 ipTM=0.157 tol=6.52
2024-12-07 08:54:00,953 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=61.3 pTM=0.43 ipTM=0.154 tol=6.23
2024-12-07 08:54:14,707 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=61.2 pTM=0.431 ipTM=0.156 tol=6.58
2024-12-07 08:54:28,449 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=60.9 pTM=0.432 ipTM=0.158 tol=5.83
2024-12-07 08:54:42,226 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=61.4 pTM=0.43 ipTM=0.155 tol=7.16
2024-12-07 08:54:56,023 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61.3 pTM=0.431 ipTM=0.157 tol=4.86
2024-12-07 08:55:09,777 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=61 pTM=0.432 ipTM=0.158 tol=5.64
2024-12-07 08:55:23,518 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=61.1 pTM=0.432 ipTM=0.157 tol=4.18
2024-12-07 08:55:37,246 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=61.1 pTM=0.431 ipTM=0.156 tol=2.97
2024-12-07 08:55:50,979 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=61.1 pTM=0.432 ipTM=0.158 tol=2.98
2024-12-07 08:56:04,712 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.2 pTM=0.43 ipTM=0.154 tol=5.98
2024-12-07 08:56:18,448 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=61.6 pTM=0.428 ipTM=0.152 tol=4.82
2024-12-07 08:56:32,176 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=61.2 pTM=0.431 ipTM=0.156 tol=2.9
2024-12-07 08:56:45,904 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=61.1 pTM=0.431 ipTM=0.156 tol=2.11
2024-12-07 08:56:59,632 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=61.3 pTM=0.432 ipTM=0.157 tol=4.93
2024-12-07 08:57:13,367 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=61.3 pTM=0.43 ipTM=0.155 tol=5.63
2024-12-07 08:57:27,096 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=61 pTM=0.433 ipTM=0.16 tol=5.62
2024-12-07 08:57:27,097 alphafold2_multimer_v3_model_5_seed_000 took 426.4s (30 recycles)
2024-12-07 08:57:27,546 reranking models by 'multimer' metric
2024-12-07 08:57:28,385 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 08:58:45,491 Relaxation took 77.9s
2024-12-07 08:58:45,491 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=59.4 pTM=0.439 ipTM=0.172
2024-12-07 08:59:42,398 Relaxation took 56.9s
2024-12-07 08:59:42,398 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=61 pTM=0.433 ipTM=0.16
2024-12-07 09:00:56,979 Relaxation took 74.6s
2024-12-07 09:00:56,979 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=60.7 pTM=0.429 ipTM=0.155
2024-12-07 09:02:04,234 Relaxation took 67.3s
2024-12-07 09:02:04,234 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=60.2 pTM=0.428 ipTM=0.154
2024-12-07 09:03:24,333 Relaxation took 80.1s
2024-12-07 09:03:24,333 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=61.2 pTM=0.426 ipTM=0.149
2024-12-07 09:03:26,030 Done