2024-12-07 08:33:33,701 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 08:33:35,069 Running on GPU
2024-12-07 08:33:37,588 Found 6 citations for tools or databases
2024-12-07 08:33:37,588 Query 1/1: NEDD4L_DLG3 (length 1792)
2024-12-07 08:33:37,874 Sleeping for 8s. Reason: PENDING
2024-12-07 08:33:46,140 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:33:52,395 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:33:59,661 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:34:08,921 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:34:16,185 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:34:26,448 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:34:31,710 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:34:40,971 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:34:50,234 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:34:59,495 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:35:07,750 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:35:16,009 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:35:24,288 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:35:29,552 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:35:36,814 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:35:47,074 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:35:54,338 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:36:02,596 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:36:08,856 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:36:17,113 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:36:23,382 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:36:33,645 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:36:38,896 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:36:47,156 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:36:55,414 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:37:02,677 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:37:12,934 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:37:19,196 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:37:29,462 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:37:39,726 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:37:47,982 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:37:54,246 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:38:03,506 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:38:10,777 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:38:20,043 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:38:30,294 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:38:36,559 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:38:46,820 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:38:56,088 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:39:05,349 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:11,601 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:39:18,873 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:25,136 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:31,401 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:39:40,660 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:39:50,923 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:39:56,184 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:40:05,441 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:40:10,696 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:40:17,953 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:40:28,226 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:40:37,495 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:40:44,755 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:40:50,015 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:40:56,275 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:41:04,539 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:41:13,803 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:41:26,055 Sleeping for 5s. Reason: PENDING
2024-12-07 08:41:31,312 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:41:41,577 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:41:51,843 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:41:58,096 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:42:04,355 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:42:10,611 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:42:19,872 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:42:27,134 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:42:34,393 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:42:44,660 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:42:53,917 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:43:04,185 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:43:11,448 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:43:19,706 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:43:25,975 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:43:35,238 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:43:44,503 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:43:49,756 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:44:00,014 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:44:06,285 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:44:14,551 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:44:23,818 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:44:31,225 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:44:41,494 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:44:50,750 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:00,026 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:09,284 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:45:14,547 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:45:20,807 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:45:31,069 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:45:41,330 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:45:46,589 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:45:56,852 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:46:02,112 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:46:08,376 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:46:14,635 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:46:21,900 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:46:27,158 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:46:36,414 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:46:42,671 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:46:50,929 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:47:01,201 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:06,463 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:11,726 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:47:34,234 Setting max_seq=508, max_extra_seq=2048
2024-12-07 08:51:51,608 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=53.4 pTM=0.332 ipTM=0.241
2024-12-07 08:53:12,366 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=53.3 pTM=0.332 ipTM=0.21 tol=19
2024-12-07 08:54:33,200 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=53.3 pTM=0.336 ipTM=0.196 tol=9.9
2024-12-07 08:55:54,071 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.5 pTM=0.332 ipTM=0.2 tol=7.42
2024-12-07 08:57:14,870 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=54 pTM=0.329 ipTM=0.197 tol=8.27
2024-12-07 08:58:35,643 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.6 pTM=0.331 ipTM=0.206 tol=6.63
2024-12-07 08:59:56,432 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=54.3 pTM=0.339 ipTM=0.2 tol=7.24
2024-12-07 09:01:17,264 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=53.8 pTM=0.334 ipTM=0.206 tol=4.48
2024-12-07 09:02:38,099 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54.3 pTM=0.329 ipTM=0.202 tol=6.39
2024-12-07 09:03:58,970 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=53.7 pTM=0.327 ipTM=0.204 tol=2.97
2024-12-07 09:05:19,804 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=53.5 pTM=0.33 ipTM=0.201 tol=5.91
2024-12-07 09:06:40,619 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=53.5 pTM=0.336 ipTM=0.209 tol=2.74
2024-12-07 09:08:01,444 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=53.4 pTM=0.326 ipTM=0.201 tol=4.34
2024-12-07 09:09:22,353 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=53 pTM=0.314 ipTM=0.196 tol=7.54
2024-12-07 09:10:43,193 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.6 pTM=0.322 ipTM=0.203 tol=7.91
2024-12-07 09:12:04,025 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.4 pTM=0.322 ipTM=0.238 tol=5.64
2024-12-07 09:13:24,946 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=53.7 pTM=0.323 ipTM=0.205 tol=7.54
2024-12-07 09:14:45,807 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=53.1 pTM=0.329 ipTM=0.203 tol=7.98
2024-12-07 09:16:06,675 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.3 pTM=0.339 ipTM=0.208 tol=4.9
2024-12-07 09:17:27,579 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.6 pTM=0.329 ipTM=0.202 tol=6.45
2024-12-07 09:18:48,391 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.4 pTM=0.33 ipTM=0.204 tol=7.54
2024-12-07 09:20:09,204 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=53.9 pTM=0.322 ipTM=0.198 tol=4.69
2024-12-07 09:21:30,086 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.2 pTM=0.317 ipTM=0.199 tol=8.27
2024-12-07 09:22:50,948 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.9 pTM=0.32 ipTM=0.234 tol=6.17
2024-12-07 09:24:11,830 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.3 pTM=0.321 ipTM=0.245 tol=9.13
2024-12-07 09:25:32,662 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54 pTM=0.322 ipTM=0.238 tol=7.93
2024-12-07 09:26:53,522 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.6 pTM=0.316 ipTM=0.235 tol=8.87
2024-12-07 09:28:14,345 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=55.5 pTM=0.326 ipTM=0.241 tol=6.1
2024-12-07 09:29:35,096 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=54.9 pTM=0.324 ipTM=0.237 tol=3.93
2024-12-07 09:30:55,907 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.5 pTM=0.317 ipTM=0.238 tol=7.57
2024-12-07 09:32:16,608 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=53.6 pTM=0.328 ipTM=0.203 tol=8.72
2024-12-07 09:32:16,610 alphafold2_multimer_v3_model_1_seed_000 took 2662.0s (30 recycles)
2024-12-07 09:33:40,400 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=56 pTM=0.319 ipTM=0.201
2024-12-07 09:35:01,554 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=58.2 pTM=0.344 ipTM=0.188 tol=14.8
2024-12-07 09:36:22,719 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=59.3 pTM=0.351 ipTM=0.184 tol=15.7
2024-12-07 09:37:43,860 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=59.2 pTM=0.347 ipTM=0.179 tol=10.4
2024-12-07 09:39:05,019 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=59.3 pTM=0.345 ipTM=0.178 tol=5.93
2024-12-07 09:40:26,192 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=59.4 pTM=0.344 ipTM=0.176 tol=6.64
2024-12-07 09:41:47,399 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=59.8 pTM=0.344 ipTM=0.178 tol=7.05
2024-12-07 09:43:08,578 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=59.9 pTM=0.343 ipTM=0.179 tol=7.07
2024-12-07 09:44:29,776 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=59.8 pTM=0.344 ipTM=0.178 tol=7.73
2024-12-07 09:45:51,015 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=59.9 pTM=0.345 ipTM=0.177 tol=4.6
2024-12-07 09:47:12,245 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=59.9 pTM=0.344 ipTM=0.178 tol=3.89
2024-12-07 09:48:33,445 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=59.7 pTM=0.346 ipTM=0.177 tol=6.07
2024-12-07 09:49:54,657 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=59.8 pTM=0.346 ipTM=0.177 tol=5.11
2024-12-07 09:51:15,845 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=59.6 pTM=0.344 ipTM=0.177 tol=2.51
2024-12-07 09:52:37,062 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=59.7 pTM=0.345 ipTM=0.175 tol=2.6
2024-12-07 09:53:58,275 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=59.6 pTM=0.346 ipTM=0.175 tol=2.53
2024-12-07 09:55:19,500 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=59.7 pTM=0.348 ipTM=0.174 tol=2.64
2024-12-07 09:56:40,685 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=59.6 pTM=0.347 ipTM=0.175 tol=2.5
2024-12-07 09:58:01,879 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=59.7 pTM=0.347 ipTM=0.176 tol=2.46
2024-12-07 09:59:23,105 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=59.7 pTM=0.346 ipTM=0.176 tol=2.9
2024-12-07 10:00:44,371 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=59.9 pTM=0.347 ipTM=0.175 tol=2.38
2024-12-07 10:02:05,641 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60 pTM=0.346 ipTM=0.175 tol=2.34
2024-12-07 10:03:26,904 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=59.9 pTM=0.345 ipTM=0.175 tol=2.11
2024-12-07 10:04:48,150 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60 pTM=0.345 ipTM=0.175 tol=2.05
2024-12-07 10:06:09,410 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.2 pTM=0.346 ipTM=0.175 tol=2.46
2024-12-07 10:07:30,639 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60 pTM=0.344 ipTM=0.175 tol=2.65
2024-12-07 10:08:51,836 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.1 pTM=0.343 ipTM=0.175 tol=2.26
2024-12-07 10:10:13,026 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60 pTM=0.343 ipTM=0.176 tol=2.23
2024-12-07 10:11:34,192 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.1 pTM=0.345 ipTM=0.176 tol=2.86
2024-12-07 10:12:55,366 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.2 pTM=0.346 ipTM=0.176 tol=2.07
2024-12-07 10:14:16,533 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.1 pTM=0.345 ipTM=0.176 tol=1.87
2024-12-07 10:14:16,535 alphafold2_multimer_v3_model_2_seed_000 took 2517.2s (30 recycles)
2024-12-07 10:15:40,839 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=57.1 pTM=0.329 ipTM=0.215
2024-12-07 10:17:02,124 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=57.3 pTM=0.347 ipTM=0.219 tol=23.2
2024-12-07 10:18:23,299 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=57.3 pTM=0.414 ipTM=0.397 tol=15
2024-12-07 10:19:44,603 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=57.6 pTM=0.338 ipTM=0.215 tol=12
2024-12-07 10:21:05,762 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=56.9 pTM=0.338 ipTM=0.18 tol=8.78
2024-12-07 10:22:26,959 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=56.3 pTM=0.333 ipTM=0.18 tol=7.88
2024-12-07 10:23:48,145 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=56.8 pTM=0.347 ipTM=0.232 tol=6.16
2024-12-07 10:25:09,340 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=56.4 pTM=0.322 ipTM=0.192 tol=9.95
2024-12-07 10:26:30,623 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55 pTM=0.312 ipTM=0.182 tol=20
2024-12-07 10:27:51,958 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.9 pTM=0.323 ipTM=0.185 tol=18.2
2024-12-07 10:29:13,246 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=57 pTM=0.342 ipTM=0.18 tol=10.7
2024-12-07 10:30:34,429 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=56.4 pTM=0.335 ipTM=0.188 tol=9.59
2024-12-07 10:31:55,658 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=56.3 pTM=0.324 ipTM=0.183 tol=10.1
2024-12-07 10:33:16,873 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=56.4 pTM=0.33 ipTM=0.186 tol=7.89
2024-12-07 10:34:38,086 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=56.6 pTM=0.348 ipTM=0.185 tol=13.6
2024-12-07 10:35:59,310 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=56.5 pTM=0.341 ipTM=0.184 tol=13.3
2024-12-07 10:37:20,457 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=56.8 pTM=0.342 ipTM=0.184 tol=5.23
2024-12-07 10:38:41,588 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=56.5 pTM=0.339 ipTM=0.183 tol=4.58
2024-12-07 10:40:02,679 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=56.4 pTM=0.335 ipTM=0.189 tol=8.51
2024-12-07 10:41:23,804 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=57 pTM=0.339 ipTM=0.185 tol=5.02
2024-12-07 10:42:44,988 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=56.6 pTM=0.34 ipTM=0.182 tol=8.31
2024-12-07 10:44:06,125 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=56.8 pTM=0.34 ipTM=0.185 tol=6.74
2024-12-07 10:45:27,200 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=57.3 pTM=0.344 ipTM=0.205 tol=5.93
2024-12-07 10:46:48,370 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=57.3 pTM=0.339 ipTM=0.183 tol=5.32
2024-12-07 10:48:09,532 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=56.8 pTM=0.338 ipTM=0.184 tol=3.94
2024-12-07 10:49:30,700 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=56.8 pTM=0.332 ipTM=0.185 tol=7.87
2024-12-07 10:50:51,825 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=57.3 pTM=0.343 ipTM=0.185 tol=4.7
2024-12-07 10:52:12,986 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=56.7 pTM=0.339 ipTM=0.184 tol=7.41
2024-12-07 10:53:34,141 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=57 pTM=0.343 ipTM=0.183 tol=5.3
2024-12-07 10:54:55,268 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=56.8 pTM=0.334 ipTM=0.187 tol=6.78
2024-12-07 10:56:16,424 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=57.1 pTM=0.341 ipTM=0.183 tol=5.56
2024-12-07 10:56:16,426 alphafold2_multimer_v3_model_3_seed_000 took 2517.2s (30 recycles)
2024-12-07 10:57:40,506 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=54.6 pTM=0.341 ipTM=0.312
2024-12-07 10:59:02,015 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=56.3 pTM=0.354 ipTM=0.2 tol=19.7
2024-12-07 11:00:23,511 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=56.7 pTM=0.35 ipTM=0.187 tol=11.5
2024-12-07 11:01:45,119 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=55.7 pTM=0.339 ipTM=0.184 tol=16.5
2024-12-07 11:03:06,683 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55.4 pTM=0.338 ipTM=0.182 tol=10.4
2024-12-07 11:04:28,230 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.8 pTM=0.341 ipTM=0.178 tol=9.32
2024-12-07 11:05:49,721 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56 pTM=0.342 ipTM=0.179 tol=5.75
2024-12-07 11:07:11,203 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=56.1 pTM=0.335 ipTM=0.178 tol=6.07
2024-12-07 11:08:32,663 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.2 pTM=0.342 ipTM=0.188 tol=7.75
2024-12-07 11:09:54,155 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=56.2 pTM=0.347 ipTM=0.182 tol=6.87
2024-12-07 11:11:15,708 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=56 pTM=0.342 ipTM=0.18 tol=6.8
2024-12-07 11:12:37,182 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=56.1 pTM=0.337 ipTM=0.184 tol=8.17
2024-12-07 11:13:58,629 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=56.5 pTM=0.347 ipTM=0.185 tol=4.68
2024-12-07 11:15:20,088 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=56 pTM=0.346 ipTM=0.182 tol=6.05
2024-12-07 11:16:41,575 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=55.5 pTM=0.34 ipTM=0.18 tol=3.73
2024-12-07 11:18:03,003 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.7 pTM=0.337 ipTM=0.184 tol=6.26
2024-12-07 11:19:24,481 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=56.3 pTM=0.344 ipTM=0.183 tol=4.42
2024-12-07 11:20:45,946 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55.4 pTM=0.342 ipTM=0.18 tol=5.96
2024-12-07 11:22:07,430 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=55.7 pTM=0.347 ipTM=0.184 tol=4.69
2024-12-07 11:23:28,914 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.5 pTM=0.339 ipTM=0.182 tol=5.27
2024-12-07 11:24:50,364 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.9 pTM=0.341 ipTM=0.181 tol=7.72
2024-12-07 11:26:11,807 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.7 pTM=0.338 ipTM=0.184 tol=4.55
2024-12-07 11:27:33,286 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=56.1 pTM=0.343 ipTM=0.179 tol=7.22
2024-12-07 11:28:54,656 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55.3 pTM=0.346 ipTM=0.209 tol=5.83
2024-12-07 11:30:16,110 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=56 pTM=0.334 ipTM=0.18 tol=7.01
2024-12-07 11:31:37,531 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=56.2 pTM=0.343 ipTM=0.185 tol=4.45
2024-12-07 11:32:59,026 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=56.2 pTM=0.342 ipTM=0.182 tol=7.29
2024-12-07 11:34:20,598 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.9 pTM=0.339 ipTM=0.178 tol=4.9
2024-12-07 11:35:42,086 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=55.9 pTM=0.343 ipTM=0.183 tol=3.54
2024-12-07 11:37:03,582 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=56 pTM=0.341 ipTM=0.18 tol=3.23
2024-12-07 11:38:25,065 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=56.2 pTM=0.344 ipTM=0.183 tol=3.82
2024-12-07 11:38:25,067 alphafold2_multimer_v3_model_4_seed_000 took 2525.9s (30 recycles)
2024-12-07 11:39:49,147 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55 pTM=0.315 ipTM=0.197
2024-12-07 11:41:10,599 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=56.2 pTM=0.307 ipTM=0.189 tol=19.9
2024-12-07 11:42:32,062 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=57 pTM=0.313 ipTM=0.191 tol=14.8
2024-12-07 11:43:53,371 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=57.7 pTM=0.332 ipTM=0.201 tol=11.3
2024-12-07 11:45:14,667 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=58.2 pTM=0.338 ipTM=0.182 tol=4.75
2024-12-07 11:46:35,969 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=58 pTM=0.333 ipTM=0.175 tol=6.08
2024-12-07 11:47:57,297 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=57.6 pTM=0.334 ipTM=0.182 tol=11.3
2024-12-07 11:49:18,612 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=58.2 pTM=0.333 ipTM=0.181 tol=7.89
2024-12-07 11:50:39,940 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=57.8 pTM=0.332 ipTM=0.177 tol=8.36
2024-12-07 11:52:01,295 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=57.9 pTM=0.329 ipTM=0.175 tol=8.75
2024-12-07 11:53:22,703 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=58.1 pTM=0.329 ipTM=0.181 tol=6.07
2024-12-07 11:54:44,006 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=57.8 pTM=0.328 ipTM=0.176 tol=5.19
2024-12-07 11:56:05,391 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=57.9 pTM=0.329 ipTM=0.177 tol=5.25
2024-12-07 11:57:26,711 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=57.7 pTM=0.325 ipTM=0.175 tol=6.09
2024-12-07 11:58:48,109 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57.7 pTM=0.323 ipTM=0.178 tol=8.34
2024-12-07 12:00:09,447 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=57.6 pTM=0.323 ipTM=0.174 tol=4.25
2024-12-07 12:01:30,821 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=57.7 pTM=0.322 ipTM=0.178 tol=4
2024-12-07 12:02:52,149 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=57.5 pTM=0.321 ipTM=0.174 tol=4.98
2024-12-07 12:04:13,556 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=57 pTM=0.327 ipTM=0.184 tol=12.4
2024-12-07 12:05:35,010 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=57.3 pTM=0.323 ipTM=0.176 tol=5.46
2024-12-07 12:06:56,383 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=57.6 pTM=0.325 ipTM=0.177 tol=5.62
2024-12-07 12:08:17,799 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=57.8 pTM=0.327 ipTM=0.177 tol=6.66
2024-12-07 12:09:39,164 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=57.6 pTM=0.322 ipTM=0.178 tol=5.96
2024-12-07 12:11:00,554 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=57.5 pTM=0.321 ipTM=0.176 tol=3.74
2024-12-07 12:12:21,919 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=57 pTM=0.325 ipTM=0.19 tol=12.7
2024-12-07 12:13:43,320 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=57.6 pTM=0.32 ipTM=0.18 tol=6.55
2024-12-07 12:15:04,609 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=57.4 pTM=0.329 ipTM=0.199 tol=11.5
2024-12-07 12:16:25,707 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=58.6 pTM=0.376 ipTM=0.313 tol=8.59
2024-12-07 12:17:46,729 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=59.5 pTM=0.409 ipTM=0.373 tol=6.71
2024-12-07 12:19:07,774 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=59.2 pTM=0.391 ipTM=0.333 tol=4.68
2024-12-07 12:20:28,837 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=59 pTM=0.375 ipTM=0.289 tol=2.41
2024-12-07 12:20:28,839 alphafold2_multimer_v3_model_5_seed_000 took 2521.1s (30 recycles)
2024-12-07 12:20:31,546 reranking models by 'multimer' metric
2024-12-07 12:20:36,734 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 12:27:37,773 Relaxation took 426.2s
2024-12-07 12:27:37,773 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=59 pTM=0.375 ipTM=0.289
2024-12-07 12:35:49,457 Relaxation took 491.7s
2024-12-07 12:35:49,457 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=53.6 pTM=0.328 ipTM=0.203
2024-12-07 12:46:50,475 Relaxation took 661.0s
2024-12-07 12:46:50,475 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=57.1 pTM=0.341 ipTM=0.183
2024-12-07 12:55:00,373 Relaxation took 489.9s
2024-12-07 12:55:00,373 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=56.2 pTM=0.344 ipTM=0.183
2024-12-07 13:02:12,152 Relaxation took 431.8s
2024-12-07 13:02:12,152 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.1 pTM=0.345 ipTM=0.176
2024-12-07 13:02:17,741 Done