2024-12-07 08:33:33,625 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 08:33:33,941 Running on GPU
2024-12-07 08:33:37,461 Found 6 citations for tools or databases
2024-12-07 08:33:37,461 Query 1/1: NEDD4L_LRP3 (length 1745)
2024-12-07 08:33:37,799 Sleeping for 8s. Reason: PENDING
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2024-12-07 08:39:44,155 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:39:51,814 Sleeping for 5s. Reason: PENDING
2024-12-07 08:39:57,065 Sleeping for 5s. Reason: PENDING
2024-12-07 08:40:02,321 Sleeping for 10s. Reason: PENDING
2024-12-07 08:40:12,580 Sleeping for 10s. Reason: PENDING
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2024-12-07 08:40:33,105 Sleeping for 10s. Reason: PENDING
2024-12-07 08:40:43,391 Sleeping for 8s. Reason: PENDING
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2024-12-07 08:41:00,915 Sleeping for 6s. Reason: PENDING
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2024-12-07 08:41:14,423 Sleeping for 10s. Reason: PENDING
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2024-12-07 08:42:06,219 Sleeping for 10s. Reason: PENDING
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2024-12-07 08:43:37,579 Sleeping for 8s. Reason: PENDING
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2024-12-07 08:44:43,685 Sleeping for 5s. Reason: PENDING
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2024-12-07 08:45:51,289 Sleeping for 6s. Reason: PENDING
2024-12-07 08:45:57,546 Sleeping for 6s. Reason: PENDING
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2024-12-07 08:47:09,881 Sleeping for 9s. Reason: PENDING
2024-12-07 08:47:19,144 Sleeping for 6s. Reason: PENDING
2024-12-07 08:47:25,409 Sleeping for 5s. Reason: PENDING
2024-12-07 08:47:30,673 Sleeping for 7s. Reason: PENDING
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2024-12-07 08:47:45,185 Sleeping for 9s. Reason: PENDING
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2024-12-07 08:48:07,979 Sleeping for 10s. Reason: PENDING
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2024-12-07 08:49:37,580 Sleeping for 9s. Reason: PENDING
2024-12-07 08:49:46,852 Sleeping for 5s. Reason: RUNNING
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2024-12-07 08:52:23,762 Sleeping for 5s. Reason: RUNNING
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2024-12-07 08:52:39,552 Sleeping for 5s. Reason: RUNNING
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2024-12-07 08:52:59,336 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:53:06,603 Sleeping for 6s. Reason: RUNNING
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2024-12-07 08:53:20,125 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:53:33,813 Setting max_seq=508, max_extra_seq=2048
2024-12-07 08:58:13,531 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=52.7 pTM=0.324 ipTM=0.247
2024-12-07 08:59:58,065 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=53.2 pTM=0.332 ipTM=0.24 tol=13.1
2024-12-07 09:01:42,696 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=52.3 pTM=0.32 ipTM=0.211 tol=7.6
2024-12-07 09:03:27,303 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=52.4 pTM=0.328 ipTM=0.231 tol=6.07
2024-12-07 09:05:11,915 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=51.8 pTM=0.324 ipTM=0.219 tol=4.54
2024-12-07 09:06:56,519 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=52 pTM=0.323 ipTM=0.21 tol=4.49
2024-12-07 09:08:41,099 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=51.8 pTM=0.321 ipTM=0.228 tol=7.02
2024-12-07 09:10:25,689 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=52.1 pTM=0.324 ipTM=0.226 tol=7.92
2024-12-07 09:12:10,313 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=52 pTM=0.327 ipTM=0.225 tol=9.8
2024-12-07 09:13:54,925 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=51.9 pTM=0.324 ipTM=0.217 tol=10.4
2024-12-07 09:15:39,574 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=52.2 pTM=0.327 ipTM=0.222 tol=8.21
2024-12-07 09:17:24,225 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=52.2 pTM=0.326 ipTM=0.217 tol=5.54
2024-12-07 09:19:08,861 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=52.2 pTM=0.327 ipTM=0.208 tol=6.93
2024-12-07 09:20:53,521 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=52.4 pTM=0.331 ipTM=0.247 tol=5.68
2024-12-07 09:22:38,170 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=51.9 pTM=0.329 ipTM=0.225 tol=3.66
2024-12-07 09:24:22,826 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=52.1 pTM=0.326 ipTM=0.216 tol=2.54
2024-12-07 09:26:07,471 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=52.7 pTM=0.338 ipTM=0.258 tol=4.75
2024-12-07 09:27:52,130 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=52.2 pTM=0.333 ipTM=0.219 tol=4.5
2024-12-07 09:29:36,789 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=52.2 pTM=0.329 ipTM=0.213 tol=3.14
2024-12-07 09:31:21,449 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=52.7 pTM=0.334 ipTM=0.268 tol=5.1
2024-12-07 09:33:06,082 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=52.6 pTM=0.336 ipTM=0.231 tol=5.3
2024-12-07 09:34:50,737 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=52.6 pTM=0.333 ipTM=0.224 tol=4.17
2024-12-07 09:36:35,352 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=52.7 pTM=0.335 ipTM=0.256 tol=5.81
2024-12-07 09:38:19,962 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=52.2 pTM=0.332 ipTM=0.227 tol=2.68
2024-12-07 09:40:04,596 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=52.5 pTM=0.331 ipTM=0.214 tol=6.45
2024-12-07 09:41:49,227 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=52.4 pTM=0.335 ipTM=0.245 tol=2.95
2024-12-07 09:43:33,829 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=52.4 pTM=0.336 ipTM=0.231 tol=6.36
2024-12-07 09:45:18,474 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=52 pTM=0.328 ipTM=0.212 tol=6.2
2024-12-07 09:47:03,131 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=52.8 pTM=0.337 ipTM=0.276 tol=3.3
2024-12-07 09:48:47,753 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=52.5 pTM=0.333 ipTM=0.237 tol=3.3
2024-12-07 09:50:32,375 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=52.6 pTM=0.329 ipTM=0.23 tol=3.32
2024-12-07 09:50:32,376 alphafold2_multimer_v3_model_1_seed_000 took 3413.6s (30 recycles)
2024-12-07 09:52:18,893 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=53.5 pTM=0.348 ipTM=0.335
2024-12-07 09:54:03,666 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=55.7 pTM=0.376 ipTM=0.327 tol=11.5
2024-12-07 09:55:48,382 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=55.5 pTM=0.371 ipTM=0.257 tol=10.7
2024-12-07 09:57:33,143 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=55.5 pTM=0.367 ipTM=0.22 tol=10.9
2024-12-07 09:59:17,894 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=55.2 pTM=0.369 ipTM=0.236 tol=12.4
2024-12-07 10:01:02,631 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55.4 pTM=0.367 ipTM=0.217 tol=11.5
2024-12-07 10:02:47,388 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=55.8 pTM=0.364 ipTM=0.2 tol=6.89
2024-12-07 10:04:32,111 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=55.7 pTM=0.366 ipTM=0.227 tol=6.82
2024-12-07 10:06:16,857 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=55.5 pTM=0.367 ipTM=0.221 tol=6.66
2024-12-07 10:08:01,582 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=55.7 pTM=0.362 ipTM=0.2 tol=8.95
2024-12-07 10:09:46,272 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=55.9 pTM=0.367 ipTM=0.268 tol=5.26
2024-12-07 10:11:30,974 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=56.1 pTM=0.366 ipTM=0.233 tol=3.63
2024-12-07 10:13:15,698 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=56 pTM=0.364 ipTM=0.214 tol=5.11
2024-12-07 10:15:00,474 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=55.9 pTM=0.364 ipTM=0.216 tol=4.53
2024-12-07 10:16:45,231 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=55.8 pTM=0.364 ipTM=0.223 tol=2.39
2024-12-07 10:18:29,951 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=55.9 pTM=0.366 ipTM=0.237 tol=3.29
2024-12-07 10:20:14,664 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=55.9 pTM=0.365 ipTM=0.225 tol=2.22
2024-12-07 10:21:59,406 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=55.9 pTM=0.36 ipTM=0.206 tol=3.64
2024-12-07 10:23:44,172 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=55.8 pTM=0.363 ipTM=0.222 tol=2.82
2024-12-07 10:25:28,924 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=55.7 pTM=0.362 ipTM=0.219 tol=4.1
2024-12-07 10:27:13,711 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=56 pTM=0.365 ipTM=0.222 tol=3.9
2024-12-07 10:28:58,442 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55.6 pTM=0.36 ipTM=0.208 tol=6.84
2024-12-07 10:30:43,151 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=55.5 pTM=0.363 ipTM=0.213 tol=6.36
2024-12-07 10:32:27,938 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=55.7 pTM=0.361 ipTM=0.209 tol=4.8
2024-12-07 10:34:12,670 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=55.7 pTM=0.362 ipTM=0.214 tol=3.79
2024-12-07 10:35:57,448 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.8 pTM=0.36 ipTM=0.206 tol=4.64
2024-12-07 10:37:42,203 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55.5 pTM=0.36 ipTM=0.201 tol=4.16
2024-12-07 10:39:26,996 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=55.3 pTM=0.361 ipTM=0.216 tol=3.5
2024-12-07 10:41:11,779 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.7 pTM=0.361 ipTM=0.211 tol=2.45
2024-12-07 10:42:56,478 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.8 pTM=0.361 ipTM=0.219 tol=3.11
2024-12-07 10:44:41,169 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=55.8 pTM=0.365 ipTM=0.253 tol=2.91
2024-12-07 10:44:41,171 alphafold2_multimer_v3_model_2_seed_000 took 3247.0s (30 recycles)
2024-12-07 10:46:28,154 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=50.9 pTM=0.321 ipTM=0.193
2024-12-07 10:48:13,247 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=51.9 pTM=0.319 ipTM=0.211 tol=16.8
2024-12-07 10:49:58,341 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=53.1 pTM=0.345 ipTM=0.2 tol=7.29
2024-12-07 10:51:43,360 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=53.2 pTM=0.351 ipTM=0.18 tol=9.02
2024-12-07 10:53:28,370 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=53.7 pTM=0.351 ipTM=0.182 tol=6.87
2024-12-07 10:55:13,417 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=53.7 pTM=0.353 ipTM=0.177 tol=5.46
2024-12-07 10:56:58,433 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=53.4 pTM=0.355 ipTM=0.248 tol=14.7
2024-12-07 10:58:43,492 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=53.2 pTM=0.354 ipTM=0.177 tol=6.86
2024-12-07 11:00:28,607 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=53.4 pTM=0.356 ipTM=0.175 tol=6.71
2024-12-07 11:02:13,648 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=53.3 pTM=0.355 ipTM=0.178 tol=4.92
2024-12-07 11:03:58,620 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=53 pTM=0.356 ipTM=0.211 tol=9.94
2024-12-07 11:05:43,695 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=53 pTM=0.355 ipTM=0.175 tol=7.09
2024-12-07 11:07:28,756 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=53.4 pTM=0.358 ipTM=0.185 tol=9.91
2024-12-07 11:09:13,835 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=53.2 pTM=0.355 ipTM=0.176 tol=5.97
2024-12-07 11:10:58,889 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=54.1 pTM=0.362 ipTM=0.252 tol=7.82
2024-12-07 11:12:44,032 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=53.3 pTM=0.355 ipTM=0.175 tol=6.57
2024-12-07 11:14:29,172 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=53.3 pTM=0.356 ipTM=0.178 tol=5.68
2024-12-07 11:16:14,303 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=53.3 pTM=0.355 ipTM=0.177 tol=5.75
2024-12-07 11:17:59,396 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=53.1 pTM=0.355 ipTM=0.181 tol=7.76
2024-12-07 11:19:44,579 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=53 pTM=0.356 ipTM=0.178 tol=13.5
2024-12-07 11:21:29,690 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=53.5 pTM=0.355 ipTM=0.179 tol=14.3
2024-12-07 11:23:14,848 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=53.7 pTM=0.355 ipTM=0.177 tol=16.2
2024-12-07 11:24:59,971 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=53.6 pTM=0.356 ipTM=0.179 tol=9.59
2024-12-07 11:26:45,128 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=53.4 pTM=0.353 ipTM=0.19 tol=8.45
2024-12-07 11:28:30,253 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=53.4 pTM=0.354 ipTM=0.176 tol=5.57
2024-12-07 11:30:15,391 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=53.3 pTM=0.352 ipTM=0.175 tol=5.48
2024-12-07 11:32:00,531 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=53.6 pTM=0.355 ipTM=0.179 tol=3.85
2024-12-07 11:33:45,679 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=53.3 pTM=0.353 ipTM=0.192 tol=5.18
2024-12-07 11:35:30,783 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=53.7 pTM=0.358 ipTM=0.183 tol=4.48
2024-12-07 11:37:15,890 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=53.4 pTM=0.354 ipTM=0.188 tol=5.82
2024-12-07 11:39:00,999 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=52.1 pTM=0.353 ipTM=0.178 tol=16.8
2024-12-07 11:39:01,001 alphafold2_multimer_v3_model_3_seed_000 took 3258.0s (30 recycles)
2024-12-07 11:40:47,849 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=50 pTM=0.31 ipTM=0.216
2024-12-07 11:42:32,829 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=50.9 pTM=0.333 ipTM=0.278 tol=19.8
2024-12-07 11:44:17,851 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=51.7 pTM=0.338 ipTM=0.222 tol=14
2024-12-07 11:46:02,985 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=52.1 pTM=0.349 ipTM=0.194 tol=12.2
2024-12-07 11:47:48,198 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=52.2 pTM=0.34 ipTM=0.186 tol=18.5
2024-12-07 11:49:33,426 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.4 pTM=0.34 ipTM=0.192 tol=16.1
2024-12-07 11:51:18,634 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=52.9 pTM=0.339 ipTM=0.188 tol=9.29
2024-12-07 11:53:03,686 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=53.1 pTM=0.34 ipTM=0.187 tol=10.2
2024-12-07 11:54:48,790 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=53.1 pTM=0.34 ipTM=0.2 tol=10.2
2024-12-07 11:56:33,893 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=53 pTM=0.337 ipTM=0.197 tol=9.38
2024-12-07 11:58:19,004 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=53 pTM=0.338 ipTM=0.193 tol=7.08
2024-12-07 12:00:04,116 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=53.3 pTM=0.338 ipTM=0.194 tol=5.45
2024-12-07 12:01:49,235 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=53.2 pTM=0.337 ipTM=0.191 tol=6.78
2024-12-07 12:03:34,383 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=53.1 pTM=0.337 ipTM=0.187 tol=7.82
2024-12-07 12:05:19,538 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=53.1 pTM=0.336 ipTM=0.193 tol=6.2
2024-12-07 12:07:04,692 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=53.2 pTM=0.341 ipTM=0.209 tol=7.12
2024-12-07 12:08:49,801 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=53.3 pTM=0.338 ipTM=0.19 tol=6.35
2024-12-07 12:10:34,947 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=53.2 pTM=0.338 ipTM=0.188 tol=4.95
2024-12-07 12:12:20,065 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=53.5 pTM=0.343 ipTM=0.225 tol=5.45
2024-12-07 12:14:05,260 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=53.7 pTM=0.338 ipTM=0.205 tol=7.74
2024-12-07 12:15:50,288 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=54.2 pTM=0.346 ipTM=0.226 tol=3.45
2024-12-07 12:17:35,339 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=53.5 pTM=0.338 ipTM=0.191 tol=7.01
2024-12-07 12:19:20,278 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=54.1 pTM=0.347 ipTM=0.233 tol=4.86
2024-12-07 12:21:05,380 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=53.7 pTM=0.341 ipTM=0.213 tol=4.21
2024-12-07 12:22:50,494 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=53.7 pTM=0.342 ipTM=0.21 tol=9.08
2024-12-07 12:24:35,601 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=53.7 pTM=0.341 ipTM=0.203 tol=7.82
2024-12-07 12:26:20,720 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=53.8 pTM=0.341 ipTM=0.202 tol=6.93
2024-12-07 12:28:05,861 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=53.3 pTM=0.336 ipTM=0.197 tol=4.03
2024-12-07 12:29:50,994 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=53.8 pTM=0.341 ipTM=0.203 tol=3.81
2024-12-07 12:31:36,186 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=53.3 pTM=0.338 ipTM=0.191 tol=4.15
2024-12-07 12:33:21,305 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=53.6 pTM=0.342 ipTM=0.22 tol=4.92
2024-12-07 12:33:21,307 alphafold2_multimer_v3_model_4_seed_000 took 3258.5s (30 recycles)
2024-12-07 12:35:08,213 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=50.3 pTM=0.325 ipTM=0.194
2024-12-07 12:36:53,340 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=51.1 pTM=0.333 ipTM=0.246 tol=17.9
2024-12-07 12:38:38,490 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=52.1 pTM=0.329 ipTM=0.179 tol=19.8
2024-12-07 12:40:23,632 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=52.7 pTM=0.338 ipTM=0.174 tol=9.83
2024-12-07 12:42:08,803 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=53.7 pTM=0.35 ipTM=0.177 tol=10.4
2024-12-07 12:43:53,876 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=53.2 pTM=0.347 ipTM=0.177 tol=10.3
2024-12-07 12:45:38,982 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=53 pTM=0.345 ipTM=0.176 tol=10.3
2024-12-07 12:47:24,168 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=53.3 pTM=0.341 ipTM=0.175 tol=10.7
2024-12-07 12:49:09,317 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=53.4 pTM=0.342 ipTM=0.228 tol=9.88
2024-12-07 12:50:54,548 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=53.2 pTM=0.334 ipTM=0.173 tol=11.8
2024-12-07 12:52:39,702 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=53.2 pTM=0.335 ipTM=0.174 tol=13.3
2024-12-07 12:54:24,860 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=53.3 pTM=0.335 ipTM=0.246 tol=11.4
2024-12-07 12:56:09,938 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=53.2 pTM=0.331 ipTM=0.18 tol=10.9
2024-12-07 12:57:54,932 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=52.8 pTM=0.327 ipTM=0.181 tol=9.47
2024-12-07 12:59:40,002 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=53 pTM=0.33 ipTM=0.173 tol=9.59
2024-12-07 13:01:25,040 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=52.8 pTM=0.331 ipTM=0.211 tol=8.88
2024-12-07 13:03:10,093 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=53.2 pTM=0.337 ipTM=0.174 tol=9.46
2024-12-07 13:04:55,127 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=52.7 pTM=0.333 ipTM=0.181 tol=7.29
2024-12-07 13:06:40,148 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=52.8 pTM=0.33 ipTM=0.187 tol=7.38
2024-12-07 13:08:25,233 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=52.7 pTM=0.326 ipTM=0.188 tol=8.76
2024-12-07 13:10:10,281 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=53 pTM=0.331 ipTM=0.191 tol=5.17
2024-12-07 13:11:55,323 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=52.9 pTM=0.331 ipTM=0.194 tol=4.58
2024-12-07 13:13:40,407 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=53.1 pTM=0.336 ipTM=0.197 tol=10.4
2024-12-07 13:15:25,463 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=52.8 pTM=0.331 ipTM=0.193 tol=6.3
2024-12-07 13:17:10,516 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=52.7 pTM=0.333 ipTM=0.194 tol=9
2024-12-07 13:18:55,588 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=53.2 pTM=0.335 ipTM=0.189 tol=7.24
2024-12-07 13:20:40,616 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=53 pTM=0.337 ipTM=0.191 tol=4.65
2024-12-07 13:22:25,717 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=52.4 pTM=0.331 ipTM=0.189 tol=8.33
2024-12-07 13:24:10,844 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=52.7 pTM=0.33 ipTM=0.196 tol=3.51
2024-12-07 13:25:55,969 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=52.4 pTM=0.326 ipTM=0.192 tol=3.3
2024-12-07 13:27:41,032 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=52.5 pTM=0.325 ipTM=0.184 tol=7.96
2024-12-07 13:27:41,034 alphafold2_multimer_v3_model_5_seed_000 took 3257.9s (30 recycles)
2024-12-07 13:27:42,884 reranking models by 'multimer' metric
2024-12-07 13:27:46,544 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 13:31:55,839 Relaxation took 253.0s
2024-12-07 13:31:55,839 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=55.8 pTM=0.365 ipTM=0.253
2024-12-07 13:35:46,679 Relaxation took 230.8s
2024-12-07 13:35:46,679 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=52.6 pTM=0.329 ipTM=0.23
2024-12-07 13:39:34,808 Relaxation took 228.1s
2024-12-07 13:39:34,809 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=53.6 pTM=0.342 ipTM=0.22
2024-12-07 13:44:47,768 Relaxation took 313.0s
2024-12-07 13:44:47,768 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=52.1 pTM=0.353 ipTM=0.178
2024-12-07 13:50:05,973 Relaxation took 318.2s
2024-12-07 13:50:05,973 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=52.5 pTM=0.325 ipTM=0.184
2024-12-07 13:50:10,059 Done