2024-12-07 08:38:46,142 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 08:38:46,588 Running on GPU
2024-12-07 08:38:50,269 Found 6 citations for tools or databases
2024-12-07 08:38:50,269 Query 1/1: NEDD4L_OCLN (length 1497)
2024-12-07 08:38:50,577 Sleeping for 7s. Reason: PENDING
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2024-12-07 08:43:07,574 Sleeping for 10s. Reason: RUNNING
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2024-12-07 08:44:31,442 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:44:41,856 Sleeping for 9s. Reason: PENDING
2024-12-07 08:44:51,121 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:00,391 Sleeping for 6s. Reason: RUNNING
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2024-12-07 08:45:11,903 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:21,166 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:45:28,423 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:45:38,683 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:45:48,941 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:45:54,198 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:46:04,463 Sleeping for 5s. Reason: RUNNING
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2024-12-07 08:46:14,975 Sleeping for 6s. Reason: RUNNING
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2024-12-07 08:46:27,485 Sleeping for 10s. Reason: RUNNING
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2024-12-07 08:46:48,015 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:46:55,286 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:47:05,547 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:10,815 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:16,070 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:47:23,335 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:47:30,602 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:47:39,871 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:45,132 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:47:58,743 Setting max_seq=508, max_extra_seq=2048
2024-12-07 08:51:56,433 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=54 pTM=0.352 ipTM=0.189
2024-12-07 08:53:01,745 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=54.2 pTM=0.333 ipTM=0.184 tol=20.7
2024-12-07 08:54:07,179 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=54.1 pTM=0.326 ipTM=0.187 tol=11.1
2024-12-07 08:55:12,601 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.6 pTM=0.33 ipTM=0.183 tol=11.4
2024-12-07 08:56:18,014 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=54.9 pTM=0.345 ipTM=0.187 tol=7.55
2024-12-07 08:57:23,381 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=54.7 pTM=0.355 ipTM=0.196 tol=4.66
2024-12-07 08:58:28,755 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=54.8 pTM=0.349 ipTM=0.192 tol=2.63
2024-12-07 08:59:34,180 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54.9 pTM=0.35 ipTM=0.196 tol=2.52
2024-12-07 09:00:39,616 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54.7 pTM=0.345 ipTM=0.189 tol=2.48
2024-12-07 09:01:45,030 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.7 pTM=0.344 ipTM=0.191 tol=1.96
2024-12-07 09:02:50,451 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=55.1 pTM=0.348 ipTM=0.19 tol=4.68
2024-12-07 09:03:55,849 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.9 pTM=0.344 ipTM=0.19 tol=2.29
2024-12-07 09:05:01,220 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=54.7 pTM=0.344 ipTM=0.191 tol=1.39
2024-12-07 09:06:06,603 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.4 pTM=0.341 ipTM=0.19 tol=1.72
2024-12-07 09:07:12,002 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.3 pTM=0.339 ipTM=0.188 tol=2.37
2024-12-07 09:08:17,381 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.3 pTM=0.337 ipTM=0.186 tol=2.55
2024-12-07 09:09:22,763 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=54.5 pTM=0.337 ipTM=0.188 tol=1.8
2024-12-07 09:10:28,151 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.3 pTM=0.334 ipTM=0.191 tol=1.87
2024-12-07 09:11:33,522 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.2 pTM=0.335 ipTM=0.191 tol=1.35
2024-12-07 09:12:38,907 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.5 pTM=0.337 ipTM=0.192 tol=1.55
2024-12-07 09:13:44,279 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.4 pTM=0.341 ipTM=0.196 tol=1.73
2024-12-07 09:14:49,639 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=54.3 pTM=0.342 ipTM=0.2 tol=3.76
2024-12-07 09:15:55,032 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.4 pTM=0.341 ipTM=0.199 tol=3.6
2024-12-07 09:17:00,419 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54 pTM=0.338 ipTM=0.193 tol=2.12
2024-12-07 09:18:05,810 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.3 pTM=0.342 ipTM=0.199 tol=3.94
2024-12-07 09:19:11,173 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.1 pTM=0.341 ipTM=0.205 tol=4.03
2024-12-07 09:20:16,577 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.1 pTM=0.338 ipTM=0.202 tol=2.41
2024-12-07 09:21:21,986 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=54.2 pTM=0.342 ipTM=0.195 tol=2.3
2024-12-07 09:22:27,358 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=54.5 pTM=0.347 ipTM=0.198 tol=2.32
2024-12-07 09:23:32,732 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.3 pTM=0.346 ipTM=0.2 tol=2.19
2024-12-07 09:24:38,129 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=54.2 pTM=0.343 ipTM=0.198 tol=4.49
2024-12-07 09:24:38,130 alphafold2_multimer_v3_model_1_seed_000 took 2195.9s (30 recycles)
2024-12-07 09:25:45,118 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=53.8 pTM=0.351 ipTM=0.176
2024-12-07 09:26:50,849 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=53.8 pTM=0.321 ipTM=0.168 tol=12.8
2024-12-07 09:27:56,527 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=54.2 pTM=0.326 ipTM=0.171 tol=11
2024-12-07 09:29:02,200 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=54.6 pTM=0.351 ipTM=0.163 tol=8.89
2024-12-07 09:30:07,851 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=55.3 pTM=0.357 ipTM=0.164 tol=5.11
2024-12-07 09:31:13,472 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55.2 pTM=0.35 ipTM=0.164 tol=5.18
2024-12-07 09:32:19,109 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=56.3 pTM=0.37 ipTM=0.164 tol=10.8
2024-12-07 09:33:24,787 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=56.5 pTM=0.375 ipTM=0.164 tol=7.52
2024-12-07 09:34:30,456 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=56.4 pTM=0.37 ipTM=0.163 tol=4.13
2024-12-07 09:35:36,117 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=56.4 pTM=0.371 ipTM=0.163 tol=3.2
2024-12-07 09:36:41,787 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=56.6 pTM=0.371 ipTM=0.163 tol=3.77
2024-12-07 09:37:47,468 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=56.5 pTM=0.373 ipTM=0.162 tol=3.34
2024-12-07 09:38:53,186 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=56.4 pTM=0.372 ipTM=0.162 tol=4.49
2024-12-07 09:39:58,855 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=56.4 pTM=0.372 ipTM=0.162 tol=2.09
2024-12-07 09:41:04,531 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=56.6 pTM=0.374 ipTM=0.161 tol=3.44
2024-12-07 09:42:10,185 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=56.4 pTM=0.372 ipTM=0.161 tol=2.86
2024-12-07 09:43:15,847 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=56.6 pTM=0.373 ipTM=0.161 tol=2.07
2024-12-07 09:44:21,502 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=56.3 pTM=0.372 ipTM=0.161 tol=1.9
2024-12-07 09:45:27,203 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=56.2 pTM=0.372 ipTM=0.16 tol=2.93
2024-12-07 09:46:32,910 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=56.3 pTM=0.374 ipTM=0.161 tol=2.62
2024-12-07 09:47:38,592 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=56.3 pTM=0.372 ipTM=0.16 tol=3.38
2024-12-07 09:48:44,276 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=56.1 pTM=0.371 ipTM=0.159 tol=5.77
2024-12-07 09:49:49,954 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=56.4 pTM=0.373 ipTM=0.16 tol=4.09
2024-12-07 09:50:55,620 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=56.2 pTM=0.372 ipTM=0.16 tol=2.92
2024-12-07 09:52:01,307 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=56.2 pTM=0.373 ipTM=0.16 tol=3.02
2024-12-07 09:53:07,007 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=56.2 pTM=0.371 ipTM=0.159 tol=2.97
2024-12-07 09:54:12,683 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=56.3 pTM=0.372 ipTM=0.16 tol=4.05
2024-12-07 09:55:18,341 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=56.2 pTM=0.372 ipTM=0.161 tol=3.11
2024-12-07 09:56:23,985 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=56.3 pTM=0.373 ipTM=0.161 tol=3.17
2024-12-07 09:57:29,628 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=56 pTM=0.371 ipTM=0.161 tol=3.22
2024-12-07 09:58:35,246 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=56.1 pTM=0.372 ipTM=0.16 tol=3.43
2024-12-07 09:58:35,247 alphafold2_multimer_v3_model_2_seed_000 took 2035.8s (30 recycles)
2024-12-07 09:59:42,348 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=53 pTM=0.352 ipTM=0.187
2024-12-07 10:00:48,039 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=53.8 pTM=0.351 ipTM=0.177 tol=18.7
2024-12-07 10:01:53,692 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=54 pTM=0.354 ipTM=0.17 tol=9.04
2024-12-07 10:02:59,293 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=53.7 pTM=0.354 ipTM=0.173 tol=6.23
2024-12-07 10:04:04,898 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=53.6 pTM=0.349 ipTM=0.173 tol=4.01
2024-12-07 10:05:10,514 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.2 pTM=0.378 ipTM=0.18 tol=4.51
2024-12-07 10:06:16,114 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.5 pTM=0.383 ipTM=0.178 tol=3.93
2024-12-07 10:07:21,729 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.7 pTM=0.384 ipTM=0.178 tol=5.65
2024-12-07 10:08:27,350 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55.7 pTM=0.383 ipTM=0.177 tol=4.62
2024-12-07 10:09:33,008 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.6 pTM=0.385 ipTM=0.182 tol=4.94
2024-12-07 10:10:38,676 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.7 pTM=0.386 ipTM=0.183 tol=5.03
2024-12-07 10:11:44,267 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.7 pTM=0.387 ipTM=0.188 tol=4.5
2024-12-07 10:12:49,910 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=55.2 pTM=0.385 ipTM=0.184 tol=11
2024-12-07 10:13:55,537 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.4 pTM=0.388 ipTM=0.192 tol=9.2
2024-12-07 10:15:01,196 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.4 pTM=0.387 ipTM=0.186 tol=5.68
2024-12-07 10:16:06,824 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.9 pTM=0.391 ipTM=0.194 tol=6.5
2024-12-07 10:17:12,425 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.6 pTM=0.391 ipTM=0.191 tol=8.4
2024-12-07 10:18:18,044 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.8 pTM=0.392 ipTM=0.192 tol=8.5
2024-12-07 10:19:23,686 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=55.7 pTM=0.393 ipTM=0.195 tol=5.37
2024-12-07 10:20:29,276 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.9 pTM=0.394 ipTM=0.194 tol=2.99
2024-12-07 10:21:34,868 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=56.1 pTM=0.395 ipTM=0.198 tol=2.8
2024-12-07 10:22:40,430 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.9 pTM=0.394 ipTM=0.199 tol=3.24
2024-12-07 10:23:46,051 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.8 pTM=0.392 ipTM=0.194 tol=3.2
2024-12-07 10:24:51,728 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.7 pTM=0.393 ipTM=0.196 tol=6.46
2024-12-07 10:25:57,396 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.8 pTM=0.395 ipTM=0.201 tol=6.01
2024-12-07 10:27:03,111 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.8 pTM=0.393 ipTM=0.196 tol=5.81
2024-12-07 10:28:08,771 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=56 pTM=0.395 ipTM=0.202 tol=3.13
2024-12-07 10:29:14,409 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=56.1 pTM=0.396 ipTM=0.202 tol=3.24
2024-12-07 10:30:20,034 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=56 pTM=0.396 ipTM=0.204 tol=2.7
2024-12-07 10:31:25,649 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.8 pTM=0.394 ipTM=0.199 tol=2.15
2024-12-07 10:32:31,255 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.8 pTM=0.396 ipTM=0.204 tol=2.21
2024-12-07 10:32:31,256 alphafold2_multimer_v3_model_3_seed_000 took 2034.7s (30 recycles)
2024-12-07 10:33:38,601 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=51.4 pTM=0.32 ipTM=0.172
2024-12-07 10:34:44,506 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=52.5 pTM=0.332 ipTM=0.176 tol=27.7
2024-12-07 10:35:50,339 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=54.2 pTM=0.377 ipTM=0.198 tol=16.3
2024-12-07 10:36:56,084 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=55 pTM=0.397 ipTM=0.303 tol=10.1
2024-12-07 10:38:01,802 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55.5 pTM=0.404 ipTM=0.33 tol=8.45
2024-12-07 10:39:07,530 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=54.7 pTM=0.411 ipTM=0.366 tol=13.6
2024-12-07 10:40:13,285 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=55.3 pTM=0.409 ipTM=0.363 tol=8.73
2024-12-07 10:41:18,982 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.3 pTM=0.413 ipTM=0.371 tol=11.4
2024-12-07 10:42:24,669 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=55 pTM=0.418 ipTM=0.387 tol=12
2024-12-07 10:43:30,404 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=55.1 pTM=0.413 ipTM=0.374 tol=8.69
2024-12-07 10:44:36,143 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=55.3 pTM=0.415 ipTM=0.38 tol=6.23
2024-12-07 10:45:41,827 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.4 pTM=0.416 ipTM=0.381 tol=6.77
2024-12-07 10:46:47,533 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=55.6 pTM=0.414 ipTM=0.379 tol=6.24
2024-12-07 10:47:53,244 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=55.5 pTM=0.415 ipTM=0.372 tol=5.77
2024-12-07 10:48:58,939 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=55.4 pTM=0.417 ipTM=0.38 tol=5.49
2024-12-07 10:50:04,607 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.2 pTM=0.415 ipTM=0.368 tol=6.45
2024-12-07 10:51:10,295 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=55.5 pTM=0.418 ipTM=0.385 tol=6.16
2024-12-07 10:52:15,951 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55.4 pTM=0.414 ipTM=0.37 tol=6.48
2024-12-07 10:53:21,635 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=55.2 pTM=0.416 ipTM=0.381 tol=6.75
2024-12-07 10:54:27,274 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.3 pTM=0.415 ipTM=0.372 tol=7.87
2024-12-07 10:55:32,933 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.3 pTM=0.417 ipTM=0.383 tol=7.92
2024-12-07 10:56:38,535 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.3 pTM=0.418 ipTM=0.374 tol=7.85
2024-12-07 10:57:44,163 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=54.7 pTM=0.419 ipTM=0.383 tol=10.2
2024-12-07 10:58:49,821 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=54.9 pTM=0.417 ipTM=0.374 tol=4.59
2024-12-07 10:59:55,426 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=55.4 pTM=0.421 ipTM=0.379 tol=7.92
2024-12-07 11:01:01,031 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55.1 pTM=0.414 ipTM=0.365 tol=8.07
2024-12-07 11:02:06,611 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=55.4 pTM=0.42 ipTM=0.385 tol=11.7
2024-12-07 11:03:12,200 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.1 pTM=0.418 ipTM=0.373 tol=12.8
2024-12-07 11:04:17,797 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=55.2 pTM=0.418 ipTM=0.378 tol=10.3
2024-12-07 11:05:23,466 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55.1 pTM=0.414 ipTM=0.37 tol=7.49
2024-12-07 11:06:29,094 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55.7 pTM=0.423 ipTM=0.391 tol=7.76
2024-12-07 11:06:29,096 alphafold2_multimer_v3_model_4_seed_000 took 2036.5s (30 recycles)
2024-12-07 11:07:36,216 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=51.7 pTM=0.36 ipTM=0.178
2024-12-07 11:08:41,978 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=53.3 pTM=0.337 ipTM=0.167 tol=13.4
2024-12-07 11:09:47,645 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=54.5 pTM=0.359 ipTM=0.174 tol=9.19
2024-12-07 11:10:53,347 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=53.7 pTM=0.343 ipTM=0.168 tol=10
2024-12-07 11:11:59,003 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=53.3 pTM=0.34 ipTM=0.171 tol=8.48
2024-12-07 11:13:04,695 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=53.7 pTM=0.336 ipTM=0.167 tol=8.39
2024-12-07 11:14:10,385 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=53.8 pTM=0.337 ipTM=0.167 tol=6.67
2024-12-07 11:15:16,047 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=54.8 pTM=0.363 ipTM=0.168 tol=6.59
2024-12-07 11:16:21,692 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.5 pTM=0.382 ipTM=0.17 tol=3.89
2024-12-07 11:17:27,332 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55.3 pTM=0.38 ipTM=0.17 tol=7.64
2024-12-07 11:18:32,961 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.3 pTM=0.378 ipTM=0.171 tol=3.82
2024-12-07 11:19:38,567 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55.4 pTM=0.378 ipTM=0.172 tol=3.53
2024-12-07 11:20:44,162 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.2 pTM=0.38 ipTM=0.173 tol=2.48
2024-12-07 11:21:49,760 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55 pTM=0.377 ipTM=0.172 tol=5.28
2024-12-07 11:22:55,362 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.2 pTM=0.38 ipTM=0.173 tol=4.32
2024-12-07 11:24:00,987 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.1 pTM=0.379 ipTM=0.172 tol=3.9
2024-12-07 11:25:06,618 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.2 pTM=0.381 ipTM=0.174 tol=4.48
2024-12-07 11:26:12,245 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.1 pTM=0.381 ipTM=0.173 tol=4.76
2024-12-07 11:27:17,872 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.2 pTM=0.382 ipTM=0.174 tol=2.17
2024-12-07 11:28:23,486 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.3 pTM=0.383 ipTM=0.173 tol=5.2
2024-12-07 11:29:29,080 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.4 pTM=0.386 ipTM=0.177 tol=2.25
2024-12-07 11:30:34,674 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.1 pTM=0.382 ipTM=0.174 tol=4.57
2024-12-07 11:31:40,319 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55 pTM=0.38 ipTM=0.172 tol=2.77
2024-12-07 11:32:45,939 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=54.9 pTM=0.381 ipTM=0.172 tol=5.5
2024-12-07 11:33:51,528 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=54.9 pTM=0.382 ipTM=0.172 tol=2.53
2024-12-07 11:34:57,139 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.3 pTM=0.383 ipTM=0.172 tol=2.53
2024-12-07 11:36:02,758 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.2 pTM=0.382 ipTM=0.172 tol=4.28
2024-12-07 11:37:08,380 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.1 pTM=0.382 ipTM=0.171 tol=4.46
2024-12-07 11:38:13,974 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.2 pTM=0.382 ipTM=0.17 tol=1.87
2024-12-07 11:39:19,575 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.1 pTM=0.381 ipTM=0.172 tol=2.63
2024-12-07 11:40:25,171 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.2 pTM=0.384 ipTM=0.172 tol=4.32
2024-12-07 11:40:25,172 alphafold2_multimer_v3_model_5_seed_000 took 2034.7s (30 recycles)
2024-12-07 11:40:26,507 reranking models by 'multimer' metric
2024-12-07 11:40:30,325 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 11:43:12,278 Relaxation took 165.8s
2024-12-07 11:43:12,278 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55.7 pTM=0.423 ipTM=0.391
2024-12-07 11:45:25,172 Relaxation took 132.9s
2024-12-07 11:45:25,172 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.8 pTM=0.396 ipTM=0.204
2024-12-07 11:50:22,594 Relaxation took 297.4s
2024-12-07 11:50:22,594 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=54.2 pTM=0.343 ipTM=0.198
2024-12-07 11:52:57,490 Relaxation took 154.9s
2024-12-07 11:52:57,490 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.2 pTM=0.384 ipTM=0.172
2024-12-07 11:55:44,577 Relaxation took 167.1s
2024-12-07 11:55:44,578 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=56.1 pTM=0.372 ipTM=0.16
2024-12-07 11:55:47,956 Done