2024-12-07 08:38:46,142 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 08:38:46,589 Running on GPU
2024-12-07 08:38:50,269 Found 6 citations for tools or databases
2024-12-07 08:38:50,269 Query 1/1: NEDD4L_PRRG1 (length 1193)
2024-12-07 08:38:50,577 Sleeping for 8s. Reason: PENDING
2024-12-07 08:38:58,839 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:05,106 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:39:13,366 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:19,626 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:39:28,886 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:35,141 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:41,404 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:39:49,663 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:39:55,924 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:40:01,180 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:40:06,443 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:40:12,699 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:40:22,964 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:40:33,227 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:40:40,484 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:40:45,753 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:40:54,011 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:41:03,272 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:41:11,523 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:41:18,784 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:41:25,049 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:41:32,312 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:41:37,563 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:41:47,835 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:41:53,086 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:42:02,342 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:42:09,598 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:42:15,870 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:42:26,128 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:42:35,386 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:42:45,654 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:42:54,912 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:43:00,174 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:43:06,447 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:43:15,711 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:43:23,964 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:43:31,216 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:43:40,480 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:43:47,743 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:43:56,003 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:44:05,261 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:44:17,909 Sleeping for 8s. Reason: PENDING
2024-12-07 08:44:26,177 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:44:33,444 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:44:42,708 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:44:47,969 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:44:55,228 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:45:02,485 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:45:10,749 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:45:16,159 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:45:22,414 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:45:30,690 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:39,945 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:45:46,199 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:45:52,449 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:45:59,713 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:46:05,967 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:46:13,234 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:46:23,490 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:46:29,747 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:46:40,014 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:46:50,276 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:47:00,531 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:47:09,791 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:21,295 Setting max_seq=508, max_extra_seq=2048
2024-12-07 08:50:45,900 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=53.5 pTM=0.398 ipTM=0.241
2024-12-07 08:51:21,130 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=53.7 pTM=0.375 ipTM=0.256 tol=17.8
2024-12-07 08:51:56,570 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=56.3 pTM=0.423 ipTM=0.289 tol=10.3
2024-12-07 08:52:32,130 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=57.7 pTM=0.45 ipTM=0.326 tol=4.54
2024-12-07 08:53:07,766 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=57.6 pTM=0.442 ipTM=0.317 tol=4.02
2024-12-07 08:53:43,488 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=57.8 pTM=0.444 ipTM=0.323 tol=2.01
2024-12-07 08:54:19,236 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=57.4 pTM=0.441 ipTM=0.318 tol=1.69
2024-12-07 08:54:55,007 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=57.8 pTM=0.443 ipTM=0.329 tol=2.01
2024-12-07 08:55:30,751 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=57.5 pTM=0.438 ipTM=0.32 tol=1.68
2024-12-07 08:56:06,487 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=57.7 pTM=0.44 ipTM=0.322 tol=1.86
2024-12-07 08:56:42,181 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=57.5 pTM=0.44 ipTM=0.323 tol=3.2
2024-12-07 08:57:17,871 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=57.6 pTM=0.441 ipTM=0.325 tol=6.39
2024-12-07 08:57:53,601 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=57.5 pTM=0.44 ipTM=0.325 tol=3.7
2024-12-07 08:58:29,356 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=57.5 pTM=0.438 ipTM=0.317 tol=2.57
2024-12-07 08:59:05,129 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=57.3 pTM=0.435 ipTM=0.319 tol=2.53
2024-12-07 08:59:40,924 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=57.5 pTM=0.438 ipTM=0.318 tol=2.61
2024-12-07 09:00:16,732 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=57.5 pTM=0.437 ipTM=0.312 tol=1.65
2024-12-07 09:00:52,538 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=57.6 pTM=0.439 ipTM=0.315 tol=2.51
2024-12-07 09:01:28,336 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=56.9 pTM=0.431 ipTM=0.309 tol=3.23
2024-12-07 09:02:04,119 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=57.4 pTM=0.438 ipTM=0.312 tol=3.43
2024-12-07 09:02:39,862 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=57.3 pTM=0.432 ipTM=0.311 tol=3.17
2024-12-07 09:03:15,623 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=57.4 pTM=0.433 ipTM=0.312 tol=1.64
2024-12-07 09:03:51,347 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=57.6 pTM=0.433 ipTM=0.309 tol=2.32
2024-12-07 09:04:27,050 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=57.3 pTM=0.434 ipTM=0.309 tol=2.44
2024-12-07 09:05:02,728 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=57.2 pTM=0.432 ipTM=0.308 tol=2.16
2024-12-07 09:05:38,415 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=57.3 pTM=0.434 ipTM=0.311 tol=3.2
2024-12-07 09:06:14,115 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=57.5 pTM=0.43 ipTM=0.312 tol=2.4
2024-12-07 09:06:49,783 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=57.3 pTM=0.427 ipTM=0.31 tol=2.94
2024-12-07 09:07:25,476 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=57.3 pTM=0.427 ipTM=0.315 tol=2.73
2024-12-07 09:08:01,167 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=57.4 pTM=0.429 ipTM=0.314 tol=1.77
2024-12-07 09:08:36,882 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=57.2 pTM=0.425 ipTM=0.312 tol=1.95
2024-12-07 09:08:36,883 alphafold2_multimer_v3_model_1_seed_000 took 1270.4s (30 recycles)
2024-12-07 09:09:13,543 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=53.9 pTM=0.393 ipTM=0.233
2024-12-07 09:09:49,362 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=58 pTM=0.461 ipTM=0.331 tol=16.7
2024-12-07 09:10:25,141 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=57.9 pTM=0.465 ipTM=0.338 tol=9.38
2024-12-07 09:11:00,906 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=57.9 pTM=0.462 ipTM=0.31 tol=5.27
2024-12-07 09:11:36,647 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=57.9 pTM=0.458 ipTM=0.311 tol=4.67
2024-12-07 09:12:12,400 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=57.8 pTM=0.453 ipTM=0.306 tol=3.95
2024-12-07 09:12:48,178 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=57.5 pTM=0.449 ipTM=0.316 tol=4.2
2024-12-07 09:13:23,963 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=58 pTM=0.453 ipTM=0.317 tol=4.21
2024-12-07 09:13:59,777 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=57.9 pTM=0.451 ipTM=0.316 tol=3.79
2024-12-07 09:14:35,597 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=57.8 pTM=0.45 ipTM=0.311 tol=2.72
2024-12-07 09:15:11,404 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=58.1 pTM=0.451 ipTM=0.313 tol=3.35
2024-12-07 09:15:47,204 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=57.9 pTM=0.449 ipTM=0.317 tol=3.73
2024-12-07 09:16:23,013 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=58.1 pTM=0.451 ipTM=0.315 tol=3.19
2024-12-07 09:16:58,796 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=57.8 pTM=0.451 ipTM=0.313 tol=2.16
2024-12-07 09:17:34,592 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=57.8 pTM=0.451 ipTM=0.313 tol=2.31
2024-12-07 09:18:10,390 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=57.8 pTM=0.454 ipTM=0.316 tol=2.77
2024-12-07 09:18:46,183 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=58 pTM=0.454 ipTM=0.31 tol=2.54
2024-12-07 09:19:22,015 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=57.9 pTM=0.452 ipTM=0.319 tol=2.29
2024-12-07 09:19:57,855 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=58 pTM=0.454 ipTM=0.314 tol=2.95
2024-12-07 09:20:33,735 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=57.7 pTM=0.449 ipTM=0.317 tol=2.18
2024-12-07 09:21:09,574 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=57.9 pTM=0.453 ipTM=0.319 tol=1.96
2024-12-07 09:21:45,373 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=57.8 pTM=0.451 ipTM=0.32 tol=1.73
2024-12-07 09:22:21,165 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=58.1 pTM=0.455 ipTM=0.317 tol=1.89
2024-12-07 09:22:56,946 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=57.8 pTM=0.452 ipTM=0.313 tol=1.59
2024-12-07 09:23:32,718 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=57.6 pTM=0.45 ipTM=0.309 tol=2.91
2024-12-07 09:24:08,522 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=57.8 pTM=0.452 ipTM=0.317 tol=2.76
2024-12-07 09:24:44,340 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=58 pTM=0.452 ipTM=0.315 tol=2.33
2024-12-07 09:25:20,211 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=57.9 pTM=0.45 ipTM=0.316 tol=3.05
2024-12-07 09:25:56,116 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=57.7 pTM=0.451 ipTM=0.323 tol=5
2024-12-07 09:26:32,050 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=57.9 pTM=0.452 ipTM=0.319 tol=4.34
2024-12-07 09:27:07,964 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=57.8 pTM=0.453 ipTM=0.319 tol=3.29
2024-12-07 09:27:07,965 alphafold2_multimer_v3_model_2_seed_000 took 1110.2s (30 recycles)
2024-12-07 09:27:44,788 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=54 pTM=0.399 ipTM=0.303
2024-12-07 09:28:20,635 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=55.9 pTM=0.407 ipTM=0.302 tol=24
2024-12-07 09:28:56,461 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=57.7 pTM=0.451 ipTM=0.339 tol=8.55
2024-12-07 09:29:32,279 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=58.5 pTM=0.46 ipTM=0.359 tol=6.23
2024-12-07 09:30:08,094 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=59 pTM=0.469 ipTM=0.361 tol=5.27
2024-12-07 09:30:43,885 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=59 pTM=0.463 ipTM=0.359 tol=4.84
2024-12-07 09:31:19,670 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=59 pTM=0.467 ipTM=0.357 tol=2.25
2024-12-07 09:31:55,503 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=59.1 pTM=0.467 ipTM=0.364 tol=2.04
2024-12-07 09:32:31,399 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=59.1 pTM=0.466 ipTM=0.367 tol=1.74
2024-12-07 09:33:07,295 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=59 pTM=0.464 ipTM=0.356 tol=1.79
2024-12-07 09:33:43,196 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=59.1 pTM=0.466 ipTM=0.36 tol=1.53
2024-12-07 09:34:19,088 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=59.7 pTM=0.472 ipTM=0.372 tol=2.04
2024-12-07 09:34:54,972 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=59.3 pTM=0.469 ipTM=0.361 tol=2.26
2024-12-07 09:35:30,856 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=59.7 pTM=0.474 ipTM=0.371 tol=2.24
2024-12-07 09:36:06,711 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=59.5 pTM=0.47 ipTM=0.36 tol=1.86
2024-12-07 09:36:42,551 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=59.9 pTM=0.477 ipTM=0.382 tol=1.65
2024-12-07 09:37:18,420 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=59.6 pTM=0.472 ipTM=0.359 tol=1.74
2024-12-07 09:37:54,326 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.1 pTM=0.48 ipTM=0.388 tol=1.68
2024-12-07 09:38:30,238 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=59.3 pTM=0.469 ipTM=0.356 tol=3.08
2024-12-07 09:39:06,140 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=59.7 pTM=0.475 ipTM=0.376 tol=1.35
2024-12-07 09:39:41,979 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=59.3 pTM=0.471 ipTM=0.357 tol=2.38
2024-12-07 09:40:17,817 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=59.6 pTM=0.475 ipTM=0.374 tol=1.92
2024-12-07 09:40:53,644 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=59.8 pTM=0.476 ipTM=0.374 tol=1.35
2024-12-07 09:41:29,447 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=59.5 pTM=0.474 ipTM=0.361 tol=1.57
2024-12-07 09:42:05,263 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=59.3 pTM=0.47 ipTM=0.355 tol=1.94
2024-12-07 09:42:41,074 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=59.2 pTM=0.469 ipTM=0.357 tol=1.47
2024-12-07 09:43:16,914 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=59.2 pTM=0.468 ipTM=0.355 tol=1.46
2024-12-07 09:43:52,781 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=59.2 pTM=0.468 ipTM=0.362 tol=1.13
2024-12-07 09:44:28,660 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=59.8 pTM=0.475 ipTM=0.367 tol=2.43
2024-12-07 09:45:04,565 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=59.4 pTM=0.466 ipTM=0.358 tol=1.79
2024-12-07 09:45:40,515 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=59.1 pTM=0.464 ipTM=0.355 tol=1.75
2024-12-07 09:45:40,516 alphafold2_multimer_v3_model_3_seed_000 took 1111.7s (30 recycles)
2024-12-07 09:46:17,265 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=51.3 pTM=0.366 ipTM=0.25
2024-12-07 09:46:53,086 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=55.2 pTM=0.436 ipTM=0.329 tol=16.7
2024-12-07 09:47:28,955 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=57.8 pTM=0.467 ipTM=0.357 tol=6.49
2024-12-07 09:48:04,796 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=58 pTM=0.469 ipTM=0.365 tol=4.65
2024-12-07 09:48:40,614 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=57.7 pTM=0.461 ipTM=0.357 tol=3.49
2024-12-07 09:49:16,429 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=57.4 pTM=0.46 ipTM=0.357 tol=4.04
2024-12-07 09:49:52,252 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=57.5 pTM=0.459 ipTM=0.355 tol=3.07
2024-12-07 09:50:28,051 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=57.5 pTM=0.463 ipTM=0.359 tol=2.15
2024-12-07 09:51:03,854 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=57.6 pTM=0.459 ipTM=0.358 tol=1.95
2024-12-07 09:51:39,658 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=57.5 pTM=0.464 ipTM=0.354 tol=1.82
2024-12-07 09:52:15,498 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=57.5 pTM=0.458 ipTM=0.354 tol=1.87
2024-12-07 09:52:51,325 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=57.4 pTM=0.461 ipTM=0.359 tol=2.46
2024-12-07 09:53:27,134 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=57.5 pTM=0.459 ipTM=0.357 tol=2.02
2024-12-07 09:54:02,907 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=57.3 pTM=0.462 ipTM=0.355 tol=3.92
2024-12-07 09:54:38,692 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=57.7 pTM=0.459 ipTM=0.359 tol=3.36
2024-12-07 09:55:14,483 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=57.2 pTM=0.46 ipTM=0.354 tol=2.05
2024-12-07 09:55:50,300 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=57.6 pTM=0.458 ipTM=0.355 tol=4.26
2024-12-07 09:56:26,055 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=57.6 pTM=0.464 ipTM=0.357 tol=4.68
2024-12-07 09:57:01,810 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=57.4 pTM=0.458 ipTM=0.352 tol=4.71
2024-12-07 09:57:37,563 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=57.2 pTM=0.46 ipTM=0.355 tol=4.85
2024-12-07 09:58:13,324 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=57.8 pTM=0.463 ipTM=0.353 tol=5.39
2024-12-07 09:58:49,072 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=57.8 pTM=0.466 ipTM=0.357 tol=3.82
2024-12-07 09:59:24,857 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=57.6 pTM=0.462 ipTM=0.357 tol=3.55
2024-12-07 10:00:00,653 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=58 pTM=0.467 ipTM=0.359 tol=5.23
2024-12-07 10:00:36,478 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=57.7 pTM=0.462 ipTM=0.354 tol=2.39
2024-12-07 10:01:12,287 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=57.8 pTM=0.466 ipTM=0.355 tol=1.89
2024-12-07 10:01:48,101 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=57.6 pTM=0.461 ipTM=0.356 tol=1.93
2024-12-07 10:02:23,924 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=57.5 pTM=0.464 ipTM=0.356 tol=2.48
2024-12-07 10:02:59,776 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=57.4 pTM=0.458 ipTM=0.357 tol=2.69
2024-12-07 10:03:35,616 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=57 pTM=0.459 ipTM=0.355 tol=4.58
2024-12-07 10:04:11,494 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=56.9 pTM=0.455 ipTM=0.352 tol=5.92
2024-12-07 10:04:11,495 alphafold2_multimer_v3_model_4_seed_000 took 1110.1s (30 recycles)
2024-12-07 10:04:48,247 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=51.3 pTM=0.402 ipTM=0.267
2024-12-07 10:05:24,047 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=55 pTM=0.447 ipTM=0.269 tol=14.8
2024-12-07 10:05:59,809 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=57.4 pTM=0.485 ipTM=0.363 tol=6.93
2024-12-07 10:06:35,574 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=57.5 pTM=0.478 ipTM=0.35 tol=4.16
2024-12-07 10:07:11,356 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=57.2 pTM=0.465 ipTM=0.319 tol=2.95
2024-12-07 10:07:47,133 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=57.7 pTM=0.471 ipTM=0.356 tol=2.36
2024-12-07 10:08:22,937 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=57.4 pTM=0.469 ipTM=0.354 tol=2.57
2024-12-07 10:08:58,795 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=57.7 pTM=0.471 ipTM=0.364 tol=2.49
2024-12-07 10:09:34,662 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=57.7 pTM=0.471 ipTM=0.369 tol=2.6
2024-12-07 10:10:10,518 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=57.7 pTM=0.47 ipTM=0.366 tol=2.84
2024-12-07 10:10:46,365 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=58.2 pTM=0.474 ipTM=0.372 tol=4.19
2024-12-07 10:11:22,172 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=58.4 pTM=0.48 ipTM=0.377 tol=2.99
2024-12-07 10:11:57,922 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=58.7 pTM=0.482 ipTM=0.374 tol=4.09
2024-12-07 10:12:33,654 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=58.8 pTM=0.483 ipTM=0.375 tol=3.19
2024-12-07 10:13:09,397 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=58.6 pTM=0.483 ipTM=0.378 tol=3.63
2024-12-07 10:13:45,168 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=58.7 pTM=0.482 ipTM=0.377 tol=4.02
2024-12-07 10:14:20,965 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=58.7 pTM=0.483 ipTM=0.377 tol=4.01
2024-12-07 10:14:56,781 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=58.6 pTM=0.479 ipTM=0.38 tol=2.06
2024-12-07 10:15:32,578 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=58.2 pTM=0.475 ipTM=0.373 tol=3.26
2024-12-07 10:16:08,384 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=58.2 pTM=0.476 ipTM=0.378 tol=4.13
2024-12-07 10:16:44,167 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=58.1 pTM=0.478 ipTM=0.373 tol=4.11
2024-12-07 10:17:19,931 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=58.5 pTM=0.478 ipTM=0.375 tol=4.27
2024-12-07 10:17:55,695 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=58.5 pTM=0.477 ipTM=0.375 tol=3.11
2024-12-07 10:18:31,490 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=58 pTM=0.475 ipTM=0.375 tol=1.89
2024-12-07 10:19:07,280 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=58.1 pTM=0.475 ipTM=0.371 tol=3.82
2024-12-07 10:19:43,044 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=58 pTM=0.475 ipTM=0.371 tol=3.88
2024-12-07 10:20:18,777 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=58.1 pTM=0.472 ipTM=0.371 tol=1.29
2024-12-07 10:20:54,529 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=57.9 pTM=0.479 ipTM=0.375 tol=3.36
2024-12-07 10:21:30,293 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=58.3 pTM=0.476 ipTM=0.376 tol=2.11
2024-12-07 10:22:06,054 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=58.3 pTM=0.478 ipTM=0.378 tol=2.02
2024-12-07 10:22:41,817 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=58.2 pTM=0.472 ipTM=0.372 tol=4.12
2024-12-07 10:22:41,817 alphafold2_multimer_v3_model_5_seed_000 took 1109.4s (30 recycles)
2024-12-07 10:22:42,690 reranking models by 'multimer' metric
2024-12-07 10:22:46,286 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 10:25:01,418 Relaxation took 138.7s
2024-12-07 10:25:01,418 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=58.2 pTM=0.472 ipTM=0.372
2024-12-07 10:27:06,730 Relaxation took 125.3s
2024-12-07 10:27:06,730 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=59.1 pTM=0.464 ipTM=0.355
2024-12-07 10:28:58,602 Relaxation took 111.9s
2024-12-07 10:28:58,603 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=56.9 pTM=0.455 ipTM=0.352
2024-12-07 10:31:01,277 Relaxation took 122.7s
2024-12-07 10:31:01,277 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=57.8 pTM=0.453 ipTM=0.319
2024-12-07 10:39:18,310 Relaxation took 497.0s
2024-12-07 10:39:18,310 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=57.2 pTM=0.425 ipTM=0.312
2024-12-07 10:39:20,762 Done