2024-12-07 08:39:00,136 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 08:39:00,483 Running on GPU
2024-12-07 08:39:01,355 Found 6 citations for tools or databases
2024-12-07 08:39:01,355 Query 1/1: NEDD4_AMOTL1 (length 2275)
2024-12-07 08:39:01,623 Sleeping for 9s. Reason: PENDING
2024-12-07 08:39:10,880 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:39:18,147 Sleeping for 7s. Reason: RUNNING
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2024-12-07 08:39:55,451 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:40:00,707 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:40:07,966 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:40:17,233 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:40:23,497 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:40:32,762 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:40:39,023 Sleeping for 8s. Reason: RUNNING
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2024-12-07 08:41:46,135 Sleeping for 9s. Reason: RUNNING
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2024-12-07 08:42:12,912 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:42:23,168 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:42:29,432 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:42:34,692 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:42:40,949 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:42:50,216 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:42:58,473 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:43:05,730 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:43:14,007 Sleeping for 6s. Reason: PENDING
2024-12-07 08:43:20,261 Sleeping for 9s. Reason: PENDING
2024-12-07 08:43:29,528 Sleeping for 6s. Reason: PENDING
2024-12-07 08:43:35,794 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:43:43,059 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:43:49,314 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:43:57,591 Sleeping for 7s. Reason: RUNNING
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2024-12-07 08:44:12,107 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:44:20,364 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:44:28,624 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:44:33,886 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:44:41,144 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:44:49,402 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:44:57,662 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:45:03,917 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:45:12,188 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:45:17,443 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:45:23,696 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:32,953 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:45:42,221 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:45:52,479 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:45:57,730 Sleeping for 10s. Reason: RUNNING
2024-12-07 08:46:07,990 Sleeping for 6s. Reason: RUNNING
2024-12-07 08:46:14,250 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:46:23,510 Sleeping for 9s. Reason: RUNNING
2024-12-07 08:46:32,777 Sleeping for 8s. Reason: RUNNING
2024-12-07 08:46:41,035 Sleeping for 7s. Reason: RUNNING
2024-12-07 08:46:48,291 Sleeping for 5s. Reason: RUNNING
2024-12-07 08:47:01,350 Setting max_seq=508, max_extra_seq=2048
2024-12-07 08:53:37,690 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=32.6 pTM=0.312 ipTM=0.213
2024-12-07 08:56:29,659 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=34.5 pTM=0.325 ipTM=0.215 tol=24.5
2024-12-07 08:59:21,835 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=34.7 pTM=0.323 ipTM=0.24 tol=16.5
2024-12-07 09:02:14,030 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=35.7 pTM=0.324 ipTM=0.258 tol=9.89
2024-12-07 09:05:06,437 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=35.6 pTM=0.317 ipTM=0.257 tol=8.59
2024-12-07 09:07:58,458 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=35.4 pTM=0.315 ipTM=0.249 tol=7.8
2024-12-07 09:10:50,407 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=35.4 pTM=0.315 ipTM=0.249 tol=8.35
2024-12-07 09:13:42,368 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=35.5 pTM=0.317 ipTM=0.254 tol=7.57
2024-12-07 09:16:34,423 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=35.6 pTM=0.312 ipTM=0.248 tol=6.11
2024-12-07 09:19:26,632 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=35.7 pTM=0.315 ipTM=0.247 tol=6.08
2024-12-07 09:22:18,969 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=35.3 pTM=0.31 ipTM=0.244 tol=6.07
2024-12-07 09:25:11,446 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=35.3 pTM=0.306 ipTM=0.242 tol=13
2024-12-07 09:28:03,826 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=35.6 pTM=0.313 ipTM=0.252 tol=11
2024-12-07 09:30:55,955 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=35.6 pTM=0.31 ipTM=0.248 tol=9.59
2024-12-07 09:33:47,840 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=35.3 pTM=0.309 ipTM=0.249 tol=11.5
2024-12-07 09:36:39,740 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=35.5 pTM=0.303 ipTM=0.239 tol=12.4
2024-12-07 09:39:31,483 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=35.9 pTM=0.317 ipTM=0.257 tol=9.91
2024-12-07 09:42:23,086 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=35.7 pTM=0.315 ipTM=0.261 tol=7.93
2024-12-07 09:45:14,679 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=35.8 pTM=0.316 ipTM=0.255 tol=10.3
2024-12-07 09:48:06,621 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=35.9 pTM=0.31 ipTM=0.249 tol=10.8
2024-12-07 09:50:58,930 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=34.9 pTM=0.302 ipTM=0.239 tol=11.3
2024-12-07 09:53:51,315 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=35.9 pTM=0.318 ipTM=0.257 tol=11.4
2024-12-07 09:56:43,305 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=35.6 pTM=0.318 ipTM=0.257 tol=5.71
2024-12-07 09:59:35,075 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=35.7 pTM=0.312 ipTM=0.245 tol=10
2024-12-07 10:02:26,982 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=35.6 pTM=0.31 ipTM=0.246 tol=10.9
2024-12-07 10:05:19,083 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=35.7 pTM=0.309 ipTM=0.244 tol=7.16
2024-12-07 10:08:11,395 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=35.7 pTM=0.311 ipTM=0.252 tol=7.69
2024-12-07 10:11:03,663 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=35.9 pTM=0.308 ipTM=0.247 tol=6.5
2024-12-07 10:13:55,630 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=35.8 pTM=0.311 ipTM=0.251 tol=5.35
2024-12-07 10:16:47,382 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=35.9 pTM=0.308 ipTM=0.245 tol=5.96
2024-12-07 10:19:39,062 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=35.5 pTM=0.309 ipTM=0.248 tol=14.9
2024-12-07 10:19:39,064 alphafold2_multimer_v3_model_1_seed_000 took 5552.2s (30 recycles)
2024-12-07 10:22:34,265 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=34.7 pTM=0.322 ipTM=0.204
2024-12-07 10:25:26,209 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=37.2 pTM=0.337 ipTM=0.211 tol=19.6
2024-12-07 10:28:18,211 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=37.3 pTM=0.341 ipTM=0.244 tol=17.9
2024-12-07 10:31:10,457 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=37.5 pTM=0.344 ipTM=0.287 tol=16.5
2024-12-07 10:34:02,992 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=37.3 pTM=0.346 ipTM=0.288 tol=14.3
2024-12-07 10:36:55,188 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=37.2 pTM=0.346 ipTM=0.29 tol=12.3
2024-12-07 10:39:47,321 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=37.4 pTM=0.349 ipTM=0.292 tol=10.9
2024-12-07 10:42:39,332 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=37.9 pTM=0.349 ipTM=0.3 tol=10.2
2024-12-07 10:45:31,419 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=37.7 pTM=0.349 ipTM=0.299 tol=10.4
2024-12-07 10:48:24,073 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=38 pTM=0.348 ipTM=0.3 tol=9.49
2024-12-07 10:51:16,403 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=37.8 pTM=0.348 ipTM=0.299 tol=9.93
2024-12-07 10:54:08,597 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=37.8 pTM=0.347 ipTM=0.302 tol=7.23
2024-12-07 10:57:00,813 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=38 pTM=0.349 ipTM=0.303 tol=7.39
2024-12-07 10:59:53,329 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=37.9 pTM=0.35 ipTM=0.311 tol=6.94
2024-12-07 11:02:45,737 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=38.1 pTM=0.348 ipTM=0.305 tol=6.89
2024-12-07 11:05:37,881 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=37.9 pTM=0.349 ipTM=0.306 tol=7.36
2024-12-07 11:08:29,822 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=38.1 pTM=0.348 ipTM=0.304 tol=6.46
2024-12-07 11:11:21,847 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=37.9 pTM=0.349 ipTM=0.306 tol=6.41
2024-12-07 11:14:13,714 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=38 pTM=0.347 ipTM=0.303 tol=5.95
2024-12-07 11:17:05,667 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=38.3 pTM=0.348 ipTM=0.304 tol=5.56
2024-12-07 11:19:57,823 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=37.8 pTM=0.347 ipTM=0.302 tol=7.93
2024-12-07 11:22:50,086 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=38.1 pTM=0.347 ipTM=0.301 tol=4.61
2024-12-07 11:25:42,427 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=38.1 pTM=0.347 ipTM=0.302 tol=5.52
2024-12-07 11:28:34,517 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=38.1 pTM=0.346 ipTM=0.295 tol=4.59
2024-12-07 11:31:26,692 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=37.9 pTM=0.347 ipTM=0.302 tol=4.73
2024-12-07 11:34:19,025 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=37.9 pTM=0.346 ipTM=0.303 tol=5.8
2024-12-07 11:37:11,361 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=38.1 pTM=0.345 ipTM=0.304 tol=5.61
2024-12-07 11:40:03,384 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=38 pTM=0.346 ipTM=0.304 tol=7.96
2024-12-07 11:42:55,515 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=38.1 pTM=0.346 ipTM=0.304 tol=7.11
2024-12-07 11:45:47,741 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=38.1 pTM=0.346 ipTM=0.304 tol=6.02
2024-12-07 11:48:40,005 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=38 pTM=0.345 ipTM=0.303 tol=4.59
2024-12-07 11:48:40,008 alphafold2_multimer_v3_model_2_seed_000 took 5337.1s (30 recycles)
2024-12-07 11:51:36,728 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=32.8 pTM=0.314 ipTM=0.23
2024-12-07 11:54:29,588 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=33.8 pTM=0.321 ipTM=0.234 tol=23.8
2024-12-07 11:57:22,448 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=34.5 pTM=0.326 ipTM=0.247 tol=15.9
2024-12-07 12:00:15,426 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=35.3 pTM=0.329 ipTM=0.25 tol=11.3
2024-12-07 12:03:08,370 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=35.5 pTM=0.331 ipTM=0.247 tol=10.9
2024-12-07 12:06:01,351 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=35.9 pTM=0.338 ipTM=0.274 tol=10.4
2024-12-07 12:08:54,346 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=36 pTM=0.338 ipTM=0.277 tol=7.92
2024-12-07 12:11:47,136 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=36.2 pTM=0.339 ipTM=0.277 tol=6.51
2024-12-07 12:14:40,254 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=36 pTM=0.339 ipTM=0.277 tol=6.76
2024-12-07 12:17:33,530 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=36.3 pTM=0.339 ipTM=0.275 tol=8.07
2024-12-07 12:20:26,869 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=36.4 pTM=0.339 ipTM=0.277 tol=8.88
2024-12-07 12:23:20,316 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=36.2 pTM=0.34 ipTM=0.279 tol=7.97
2024-12-07 12:26:13,408 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=36.2 pTM=0.339 ipTM=0.278 tol=5.43
2024-12-07 12:29:06,501 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=36.4 pTM=0.34 ipTM=0.278 tol=9.12
2024-12-07 12:31:59,691 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=36.5 pTM=0.34 ipTM=0.281 tol=5.14
2024-12-07 12:34:52,731 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=36.7 pTM=0.34 ipTM=0.28 tol=5.43
2024-12-07 12:37:45,683 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=36.6 pTM=0.341 ipTM=0.277 tol=5.86
2024-12-07 12:40:38,726 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=36.4 pTM=0.34 ipTM=0.276 tol=5.61
2024-12-07 12:43:32,026 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=36.3 pTM=0.34 ipTM=0.275 tol=5.2
2024-12-07 12:46:25,434 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=36.5 pTM=0.34 ipTM=0.278 tol=4.29
2024-12-07 12:49:18,468 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=36.4 pTM=0.34 ipTM=0.279 tol=6.13
2024-12-07 12:52:11,635 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=36.4 pTM=0.34 ipTM=0.278 tol=4.99
2024-12-07 12:55:05,107 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=36.8 pTM=0.34 ipTM=0.28 tol=7.15
2024-12-07 12:57:58,400 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=36.5 pTM=0.34 ipTM=0.278 tol=5.77
2024-12-07 13:00:51,771 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=36.3 pTM=0.34 ipTM=0.28 tol=4.99
2024-12-07 13:03:44,961 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=36.2 pTM=0.339 ipTM=0.278 tol=4.59
2024-12-07 13:06:38,208 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=36.3 pTM=0.339 ipTM=0.279 tol=4.3
2024-12-07 13:09:31,659 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=36.3 pTM=0.339 ipTM=0.281 tol=4.61
2024-12-07 13:12:24,728 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=36.5 pTM=0.339 ipTM=0.28 tol=3.63
2024-12-07 13:15:17,865 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=36.6 pTM=0.339 ipTM=0.279 tol=3.57
2024-12-07 13:18:11,149 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=36.4 pTM=0.339 ipTM=0.281 tol=4.28
2024-12-07 13:18:11,152 alphafold2_multimer_v3_model_3_seed_000 took 5367.3s (30 recycles)
2024-12-07 13:21:08,711 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=32.6 pTM=0.302 ipTM=0.194
2024-12-07 13:24:02,773 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=32.8 pTM=0.307 ipTM=0.204 tol=21.5
2024-12-07 13:26:56,829 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=32.4 pTM=0.297 ipTM=0.201 tol=19.5
2024-12-07 13:29:50,908 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=33.2 pTM=0.308 ipTM=0.201 tol=14.9
2024-12-07 13:32:45,054 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=33.3 pTM=0.305 ipTM=0.202 tol=13.1
2024-12-07 13:35:39,166 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=33.2 pTM=0.303 ipTM=0.204 tol=11.8
2024-12-07 13:38:33,148 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=33.1 pTM=0.299 ipTM=0.211 tol=15.7
2024-12-07 13:41:26,999 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=33.4 pTM=0.309 ipTM=0.217 tol=12.1
2024-12-07 13:44:21,028 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=33.3 pTM=0.303 ipTM=0.22 tol=13.9
2024-12-07 13:47:15,014 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=33.4 pTM=0.309 ipTM=0.221 tol=13.6
2024-12-07 13:50:09,034 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=33.4 pTM=0.302 ipTM=0.222 tol=14.5
2024-12-07 13:53:02,891 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=33.7 pTM=0.314 ipTM=0.222 tol=12.3
2024-12-07 13:55:56,784 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=34.2 pTM=0.315 ipTM=0.22 tol=11.4
2024-12-07 13:58:50,706 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=34.2 pTM=0.315 ipTM=0.222 tol=14.1
2024-12-07 14:01:44,637 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=34 pTM=0.314 ipTM=0.222 tol=11.6
2024-12-07 14:04:38,712 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=34.2 pTM=0.314 ipTM=0.223 tol=9.5
2024-12-07 14:07:32,803 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=34 pTM=0.313 ipTM=0.223 tol=8.65
2024-12-07 14:10:27,123 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=34 pTM=0.312 ipTM=0.223 tol=7.79
2024-12-07 14:13:21,121 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=34.3 pTM=0.311 ipTM=0.222 tol=7.91
2024-12-07 14:16:15,203 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=34.3 pTM=0.314 ipTM=0.222 tol=8.33
2024-12-07 14:19:09,388 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=34.4 pTM=0.312 ipTM=0.222 tol=8.59
2024-12-07 14:22:03,608 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=34.1 pTM=0.312 ipTM=0.223 tol=7.34
2024-12-07 14:24:57,917 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=34.2 pTM=0.313 ipTM=0.221 tol=9.68
2024-12-07 14:27:52,025 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=34.2 pTM=0.313 ipTM=0.221 tol=9.07
2024-12-07 14:30:45,918 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=34.4 pTM=0.314 ipTM=0.221 tol=6.7
2024-12-07 14:33:39,877 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=34.3 pTM=0.313 ipTM=0.222 tol=6.81
2024-12-07 14:36:33,913 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=34.2 pTM=0.313 ipTM=0.221 tol=7.31
2024-12-07 14:39:27,643 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=34.4 pTM=0.314 ipTM=0.221 tol=8.65
2024-12-07 14:42:21,332 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=34.4 pTM=0.315 ipTM=0.221 tol=8.08
2024-12-07 14:45:15,075 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=34.2 pTM=0.314 ipTM=0.22 tol=7.78
2024-12-07 14:48:09,025 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=34.4 pTM=0.315 ipTM=0.221 tol=7.2
2024-12-07 14:48:09,028 alphafold2_multimer_v3_model_4_seed_000 took 5394.1s (30 recycles)
2024-12-07 14:51:06,320 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=31.6 pTM=0.295 ipTM=0.189
2024-12-07 14:53:59,847 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=33 pTM=0.325 ipTM=0.201 tol=29.3
2024-12-07 14:56:53,325 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=33.6 pTM=0.33 ipTM=0.202 tol=18.3
2024-12-07 14:59:46,940 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=33.7 pTM=0.331 ipTM=0.205 tol=16.8
2024-12-07 15:02:40,378 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=33.6 pTM=0.329 ipTM=0.204 tol=11.4
2024-12-07 15:05:33,836 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=33.8 pTM=0.332 ipTM=0.205 tol=10.3
2024-12-07 15:08:27,395 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=34.1 pTM=0.332 ipTM=0.206 tol=20.5
2024-12-07 15:11:20,860 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=34 pTM=0.331 ipTM=0.204 tol=15.9
2024-12-07 15:14:14,349 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=34.2 pTM=0.332 ipTM=0.217 tol=17.2
2024-12-07 15:17:07,998 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=34.2 pTM=0.332 ipTM=0.227 tol=17.1
2024-12-07 15:20:01,567 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=34.3 pTM=0.333 ipTM=0.228 tol=10.5
2024-12-07 15:22:55,125 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=34.2 pTM=0.332 ipTM=0.233 tol=9.88
2024-12-07 15:25:48,789 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=34.2 pTM=0.332 ipTM=0.234 tol=13.5
2024-12-07 15:28:42,287 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=34.3 pTM=0.333 ipTM=0.235 tol=14.2
2024-12-07 15:31:35,930 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=34.4 pTM=0.333 ipTM=0.237 tol=14.2
2024-12-07 15:34:29,480 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=34.6 pTM=0.333 ipTM=0.24 tol=16.2
2024-12-07 15:37:23,129 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=34.1 pTM=0.332 ipTM=0.238 tol=11.1
2024-12-07 15:40:16,700 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=34.3 pTM=0.332 ipTM=0.239 tol=12
2024-12-07 15:43:10,329 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=34.4 pTM=0.333 ipTM=0.238 tol=12.5
2024-12-07 15:46:03,908 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=34.5 pTM=0.334 ipTM=0.242 tol=8.18
2024-12-07 15:48:57,610 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=34.5 pTM=0.332 ipTM=0.241 tol=12.6
2024-12-07 15:51:51,019 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=34.6 pTM=0.333 ipTM=0.24 tol=12
2024-12-07 15:54:44,268 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=34.9 pTM=0.333 ipTM=0.244 tol=9.04
2024-12-07 15:57:37,373 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=34.7 pTM=0.334 ipTM=0.24 tol=12
2024-12-07 16:00:30,448 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=34.6 pTM=0.334 ipTM=0.243 tol=7.8
2024-12-07 16:03:23,624 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=35.1 pTM=0.333 ipTM=0.239 tol=16.9
2024-12-07 16:06:16,950 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=34.4 pTM=0.333 ipTM=0.24 tol=10.7
2024-12-07 16:09:10,208 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=34.7 pTM=0.333 ipTM=0.242 tol=12.3
2024-12-07 16:12:03,404 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=34.6 pTM=0.333 ipTM=0.245 tol=16.5
2024-12-07 16:14:56,822 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=34.7 pTM=0.332 ipTM=0.237 tol=14.9
2024-12-07 16:17:50,531 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=34.6 pTM=0.333 ipTM=0.242 tol=15.3
2024-12-07 16:17:50,534 alphafold2_multimer_v3_model_5_seed_000 took 5377.7s (30 recycles)
2024-12-07 16:17:54,364 reranking models by 'multimer' metric
2024-12-07 16:17:56,793 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 16:34:54,653 Relaxation took 1020.3s
2024-12-07 16:34:54,653 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=38 pTM=0.345 ipTM=0.303
2024-12-07 16:43:24,310 Relaxation took 509.7s
2024-12-07 16:43:24,310 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=36.4 pTM=0.339 ipTM=0.281
2024-12-07 17:35:46,423 Relaxation took 3142.1s
2024-12-07 17:35:46,423 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=35.5 pTM=0.309 ipTM=0.248
2024-12-07 19:05:00,874 Relaxation took 5354.4s
2024-12-07 19:05:00,875 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=34.6 pTM=0.333 ipTM=0.242
2024-12-07 19:14:18,772 Relaxation took 557.9s
2024-12-07 19:14:18,772 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=34.4 pTM=0.315 ipTM=0.221
2024-12-07 19:14:26,393 Done