2024-12-07 09:01:27,308 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 09:01:27,623 Running on GPU
2024-12-07 09:01:30,952 Found 6 citations for tools or databases
2024-12-07 09:01:30,952 Query 1/1: NEDD4_PLSCR1 (length 1637)
2024-12-07 09:01:31,247 Sleeping for 5s. Reason: PENDING
2024-12-07 09:01:36,498 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:01:46,756 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:01:52,006 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:02:00,268 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:02:07,521 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:02:17,778 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:02:26,035 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:02:36,292 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:02:46,543 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:02:53,802 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:02:59,063 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:03:06,328 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:03:15,583 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:03:25,841 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:03:35,096 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:03:41,351 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:03:48,612 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:03:57,867 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:04:07,132 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:04:14,390 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:04:21,967 Sleeping for 9s. Reason: PENDING
2024-12-07 09:04:31,231 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:04:38,487 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:04:44,745 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:04:52,000 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:05:00,252 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:05:08,509 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:05:14,758 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:05:25,018 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:05:35,275 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:05:44,530 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:05:51,786 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:05:59,043 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:06:04,293 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:06:10,600 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:06:20,860 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:06:27,111 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:06:32,364 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:06:38,615 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:06:48,874 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:06:58,143 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:07:06,404 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:07:14,659 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:07:28,004 Setting max_seq=508, max_extra_seq=2048
2024-12-07 09:11:48,296 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=43.3 pTM=0.329 ipTM=0.201
2024-12-07 09:13:13,466 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=43.3 pTM=0.322 ipTM=0.203 tol=17.1
2024-12-07 09:14:38,836 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=43.7 pTM=0.32 ipTM=0.195 tol=17.6
2024-12-07 09:16:04,212 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=42.9 pTM=0.314 ipTM=0.207 tol=13.8
2024-12-07 09:17:29,740 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=43.1 pTM=0.316 ipTM=0.193 tol=15
2024-12-07 09:18:55,267 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=43.1 pTM=0.314 ipTM=0.205 tol=15
2024-12-07 09:20:20,798 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=42.8 pTM=0.323 ipTM=0.21 tol=11.2
2024-12-07 09:21:46,252 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=42.7 pTM=0.322 ipTM=0.211 tol=8.88
2024-12-07 09:23:11,722 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=43.1 pTM=0.324 ipTM=0.214 tol=10.6
2024-12-07 09:24:37,153 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=42.6 pTM=0.328 ipTM=0.212 tol=14.2
2024-12-07 09:26:02,637 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=42 pTM=0.321 ipTM=0.213 tol=22
2024-12-07 09:27:28,147 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=43 pTM=0.323 ipTM=0.209 tol=16.9
2024-12-07 09:28:53,629 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=42.8 pTM=0.335 ipTM=0.217 tol=24
2024-12-07 09:30:19,032 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=43.3 pTM=0.345 ipTM=0.253 tol=16.8
2024-12-07 09:31:44,376 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=43.2 pTM=0.347 ipTM=0.28 tol=15
2024-12-07 09:33:09,744 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=43.3 pTM=0.344 ipTM=0.25 tol=11.2
2024-12-07 09:34:35,082 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=43.2 pTM=0.339 ipTM=0.235 tol=8.47
2024-12-07 09:36:00,426 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=43.7 pTM=0.345 ipTM=0.258 tol=8.27
2024-12-07 09:37:25,746 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=43 pTM=0.342 ipTM=0.219 tol=10.8
2024-12-07 09:38:51,080 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=43.2 pTM=0.347 ipTM=0.219 tol=5.76
2024-12-07 09:40:16,366 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=43 pTM=0.342 ipTM=0.245 tol=8.8
2024-12-07 09:41:41,692 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=43.2 pTM=0.346 ipTM=0.223 tol=6.55
2024-12-07 09:43:07,002 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=42.7 pTM=0.344 ipTM=0.217 tol=9.94
2024-12-07 09:44:32,348 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=43.2 pTM=0.347 ipTM=0.216 tol=7.05
2024-12-07 09:45:57,679 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=42.7 pTM=0.342 ipTM=0.217 tol=8.98
2024-12-07 09:47:23,013 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=43.2 pTM=0.349 ipTM=0.223 tol=9.96
2024-12-07 09:48:48,317 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=42.7 pTM=0.347 ipTM=0.236 tol=11.1
2024-12-07 09:50:13,622 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=43.4 pTM=0.355 ipTM=0.215 tol=11.2
2024-12-07 09:51:38,887 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=43 pTM=0.349 ipTM=0.259 tol=9.95
2024-12-07 09:53:04,189 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=43.3 pTM=0.346 ipTM=0.222 tol=9.09
2024-12-07 09:54:29,479 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=42.7 pTM=0.349 ipTM=0.25 tol=12.7
2024-12-07 09:54:29,481 alphafold2_multimer_v3_model_1_seed_000 took 2816.1s (30 recycles)
2024-12-07 09:55:56,336 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=44.2 pTM=0.344 ipTM=0.218
2024-12-07 09:57:21,818 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=46.2 pTM=0.362 ipTM=0.225 tol=24.6
2024-12-07 09:58:47,408 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=46.6 pTM=0.362 ipTM=0.189 tol=14.1
2024-12-07 10:00:13,035 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=46.7 pTM=0.361 ipTM=0.181 tol=10.7
2024-12-07 10:01:38,733 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=46.3 pTM=0.36 ipTM=0.171 tol=22.4
2024-12-07 10:03:04,421 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=47.1 pTM=0.358 ipTM=0.194 tol=17.1
2024-12-07 10:04:30,063 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=46.9 pTM=0.363 ipTM=0.185 tol=17.3
2024-12-07 10:05:55,680 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=47 pTM=0.361 ipTM=0.179 tol=13.4
2024-12-07 10:07:21,296 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=47.5 pTM=0.364 ipTM=0.208 tol=12
2024-12-07 10:08:46,855 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=47 pTM=0.36 ipTM=0.185 tol=15.1
2024-12-07 10:10:12,386 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=46.9 pTM=0.357 ipTM=0.181 tol=6.38
2024-12-07 10:11:37,993 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=47.4 pTM=0.361 ipTM=0.198 tol=9.27
2024-12-07 10:13:03,530 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=47.2 pTM=0.36 ipTM=0.192 tol=11
2024-12-07 10:14:29,102 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=47.1 pTM=0.359 ipTM=0.187 tol=5
2024-12-07 10:15:54,760 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=47.3 pTM=0.362 ipTM=0.202 tol=9
2024-12-07 10:17:20,343 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=47.1 pTM=0.361 ipTM=0.193 tol=9.36
2024-12-07 10:18:45,921 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=47.1 pTM=0.36 ipTM=0.185 tol=5.11
2024-12-07 10:20:11,465 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=47.7 pTM=0.367 ipTM=0.224 tol=12.6
2024-12-07 10:21:37,079 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=47.3 pTM=0.36 ipTM=0.183 tol=12.5
2024-12-07 10:23:02,667 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=47.1 pTM=0.36 ipTM=0.182 tol=6.54
2024-12-07 10:24:28,265 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=47.3 pTM=0.36 ipTM=0.183 tol=4.66
2024-12-07 10:25:53,863 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=47.1 pTM=0.36 ipTM=0.202 tol=10.5
2024-12-07 10:27:19,489 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=47.2 pTM=0.357 ipTM=0.179 tol=12
2024-12-07 10:28:45,009 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=47.2 pTM=0.357 ipTM=0.186 tol=5.58
2024-12-07 10:30:10,575 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=47.3 pTM=0.361 ipTM=0.203 tol=8.54
2024-12-07 10:31:36,153 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=47.3 pTM=0.359 ipTM=0.19 tol=10.8
2024-12-07 10:33:01,692 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=47.1 pTM=0.357 ipTM=0.183 tol=5.26
2024-12-07 10:34:27,302 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=47.3 pTM=0.359 ipTM=0.185 tol=8.99
2024-12-07 10:35:52,866 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=47.3 pTM=0.359 ipTM=0.198 tol=6.77
2024-12-07 10:37:18,378 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=47.1 pTM=0.358 ipTM=0.185 tol=6.92
2024-12-07 10:38:44,040 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=47.2 pTM=0.361 ipTM=0.199 tol=7.68
2024-12-07 10:38:44,041 alphafold2_multimer_v3_model_2_seed_000 took 2653.0s (30 recycles)
2024-12-07 10:40:11,434 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=41.4 pTM=0.319 ipTM=0.175
2024-12-07 10:41:37,297 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=42.2 pTM=0.321 ipTM=0.231 tol=33.2
2024-12-07 10:43:03,132 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=42.5 pTM=0.319 ipTM=0.204 tol=12.7
2024-12-07 10:44:28,991 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=43.3 pTM=0.338 ipTM=0.211 tol=13.3
2024-12-07 10:45:54,839 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=44.5 pTM=0.36 ipTM=0.21 tol=8.03
2024-12-07 10:47:20,656 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=44.5 pTM=0.362 ipTM=0.215 tol=5.06
2024-12-07 10:48:46,528 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=44.5 pTM=0.361 ipTM=0.216 tol=4.57
2024-12-07 10:50:12,380 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=44.5 pTM=0.358 ipTM=0.204 tol=3.63
2024-12-07 10:51:38,228 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=44.3 pTM=0.356 ipTM=0.207 tol=4.12
2024-12-07 10:53:04,056 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=44.3 pTM=0.355 ipTM=0.2 tol=4.34
2024-12-07 10:54:29,853 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=44.4 pTM=0.357 ipTM=0.207 tol=4.32
2024-12-07 10:55:55,644 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=44.8 pTM=0.356 ipTM=0.197 tol=4.31
2024-12-07 10:57:21,403 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=44.5 pTM=0.357 ipTM=0.204 tol=5.11
2024-12-07 10:58:47,203 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=44.3 pTM=0.357 ipTM=0.204 tol=4.7
2024-12-07 11:00:12,979 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=44.7 pTM=0.358 ipTM=0.209 tol=3.22
2024-12-07 11:01:38,703 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=44.1 pTM=0.357 ipTM=0.209 tol=3.69
2024-12-07 11:03:04,459 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=44.8 pTM=0.361 ipTM=0.219 tol=3.4
2024-12-07 11:04:30,242 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=44.5 pTM=0.359 ipTM=0.199 tol=4.35
2024-12-07 11:05:56,027 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=44.6 pTM=0.362 ipTM=0.219 tol=3.37
2024-12-07 11:07:21,797 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=44.2 pTM=0.359 ipTM=0.208 tol=3.15
2024-12-07 11:08:47,592 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=44.8 pTM=0.362 ipTM=0.208 tol=3.53
2024-12-07 11:10:13,425 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=44.4 pTM=0.356 ipTM=0.192 tol=4.23
2024-12-07 11:11:39,292 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=44.6 pTM=0.358 ipTM=0.202 tol=3.68
2024-12-07 11:13:05,169 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=44.2 pTM=0.354 ipTM=0.199 tol=3.95
2024-12-07 11:14:31,039 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=44.5 pTM=0.36 ipTM=0.207 tol=2.45
2024-12-07 11:15:56,899 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=44.3 pTM=0.355 ipTM=0.194 tol=2.45
2024-12-07 11:17:22,741 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=44.5 pTM=0.36 ipTM=0.209 tol=2.91
2024-12-07 11:18:48,632 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=44.3 pTM=0.354 ipTM=0.194 tol=2.68
2024-12-07 11:20:14,476 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=44.4 pTM=0.355 ipTM=0.205 tol=3.34
2024-12-07 11:21:40,305 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=44.1 pTM=0.354 ipTM=0.201 tol=2.89
2024-12-07 11:23:06,163 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=44.6 pTM=0.356 ipTM=0.207 tol=2.85
2024-12-07 11:23:06,165 alphafold2_multimer_v3_model_3_seed_000 took 2660.5s (30 recycles)
2024-12-07 11:24:33,291 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=40.5 pTM=0.327 ipTM=0.262
2024-12-07 11:25:59,064 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=41.3 pTM=0.327 ipTM=0.271 tol=26.7
2024-12-07 11:27:24,763 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=41.6 pTM=0.336 ipTM=0.255 tol=13.7
2024-12-07 11:28:50,512 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=41.5 pTM=0.342 ipTM=0.25 tol=10.4
2024-12-07 11:30:16,293 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=41.9 pTM=0.341 ipTM=0.256 tol=6.83
2024-12-07 11:31:42,040 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=41.6 pTM=0.341 ipTM=0.258 tol=5.77
2024-12-07 11:33:07,862 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=42.3 pTM=0.343 ipTM=0.255 tol=5.83
2024-12-07 11:34:33,584 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=41.8 pTM=0.342 ipTM=0.257 tol=10.3
2024-12-07 11:35:59,320 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=41.6 pTM=0.338 ipTM=0.255 tol=10.2
2024-12-07 11:37:25,080 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=41.4 pTM=0.335 ipTM=0.245 tol=6.29
2024-12-07 11:38:50,815 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=41.7 pTM=0.337 ipTM=0.274 tol=5.69
2024-12-07 11:40:16,578 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=41.2 pTM=0.332 ipTM=0.251 tol=6.74
2024-12-07 11:41:42,395 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=41.4 pTM=0.335 ipTM=0.277 tol=6.49
2024-12-07 11:43:08,159 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=41.1 pTM=0.327 ipTM=0.257 tol=4.94
2024-12-07 11:44:33,945 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=41.5 pTM=0.331 ipTM=0.267 tol=5.25
2024-12-07 11:45:59,776 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=41.4 pTM=0.33 ipTM=0.264 tol=4.34
2024-12-07 11:47:25,592 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=41.5 pTM=0.336 ipTM=0.26 tol=4.21
2024-12-07 11:48:51,396 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=41.5 pTM=0.335 ipTM=0.269 tol=5.68
2024-12-07 11:50:17,221 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=41.3 pTM=0.333 ipTM=0.271 tol=5.82
2024-12-07 11:51:42,985 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=41.4 pTM=0.329 ipTM=0.259 tol=5.42
2024-12-07 11:53:08,734 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=41.7 pTM=0.334 ipTM=0.271 tol=4.34
2024-12-07 11:54:34,528 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=41.2 pTM=0.324 ipTM=0.259 tol=4.95
2024-12-07 11:56:00,321 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=41.2 pTM=0.33 ipTM=0.265 tol=6.27
2024-12-07 11:57:26,129 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=41.1 pTM=0.323 ipTM=0.248 tol=8.05
2024-12-07 11:58:51,907 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=41.3 pTM=0.335 ipTM=0.272 tol=6.02
2024-12-07 12:00:17,718 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=41.4 pTM=0.321 ipTM=0.237 tol=4.21
2024-12-07 12:01:43,415 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=41.4 pTM=0.33 ipTM=0.27 tol=4.2
2024-12-07 12:03:09,131 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=41.5 pTM=0.334 ipTM=0.271 tol=4.03
2024-12-07 12:04:34,949 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=41.8 pTM=0.333 ipTM=0.264 tol=4.98
2024-12-07 12:06:00,730 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=41.6 pTM=0.326 ipTM=0.26 tol=4.09
2024-12-07 12:07:26,522 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=41 pTM=0.328 ipTM=0.255 tol=5.09
2024-12-07 12:07:26,523 alphafold2_multimer_v3_model_4_seed_000 took 2658.8s (30 recycles)
2024-12-07 12:08:53,891 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=42.3 pTM=0.34 ipTM=0.221
2024-12-07 12:10:19,599 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=42.7 pTM=0.342 ipTM=0.255 tol=24.8
2024-12-07 12:11:45,262 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=43.9 pTM=0.354 ipTM=0.234 tol=15.2
2024-12-07 12:13:11,003 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=44 pTM=0.363 ipTM=0.239 tol=10.3
2024-12-07 12:14:36,672 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=43.8 pTM=0.365 ipTM=0.248 tol=8.93
2024-12-07 12:16:02,327 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=44.1 pTM=0.368 ipTM=0.246 tol=7.62
2024-12-07 12:17:27,924 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=44 pTM=0.368 ipTM=0.25 tol=5.02
2024-12-07 12:18:53,504 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=43.7 pTM=0.368 ipTM=0.252 tol=6.57
2024-12-07 12:20:19,132 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=44 pTM=0.367 ipTM=0.249 tol=7.65
2024-12-07 12:21:44,790 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=44.2 pTM=0.37 ipTM=0.255 tol=5.48
2024-12-07 12:23:10,494 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=44 pTM=0.368 ipTM=0.253 tol=6.19
2024-12-07 12:24:36,230 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=44 pTM=0.365 ipTM=0.25 tol=8.39
2024-12-07 12:26:01,975 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=43.9 pTM=0.367 ipTM=0.255 tol=8.39
2024-12-07 12:27:27,667 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=43.7 pTM=0.367 ipTM=0.25 tol=8.11
2024-12-07 12:28:53,359 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=43.7 pTM=0.365 ipTM=0.254 tol=4.97
2024-12-07 12:30:19,078 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=43.8 pTM=0.368 ipTM=0.255 tol=7.35
2024-12-07 12:31:44,786 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=43.9 pTM=0.373 ipTM=0.259 tol=5.28
2024-12-07 12:33:10,461 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=44 pTM=0.375 ipTM=0.261 tol=7.56
2024-12-07 12:34:36,187 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=43.8 pTM=0.374 ipTM=0.263 tol=4.84
2024-12-07 12:36:01,894 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=43.8 pTM=0.373 ipTM=0.256 tol=8.28
2024-12-07 12:37:27,634 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=43.8 pTM=0.373 ipTM=0.257 tol=8.71
2024-12-07 12:38:53,344 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=43.8 pTM=0.371 ipTM=0.254 tol=7.54
2024-12-07 12:40:19,095 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=43.8 pTM=0.373 ipTM=0.258 tol=9.05
2024-12-07 12:41:44,893 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=43.8 pTM=0.371 ipTM=0.257 tol=4.73
2024-12-07 12:43:10,628 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=43.6 pTM=0.373 ipTM=0.26 tol=5.93
2024-12-07 12:44:36,346 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=43.7 pTM=0.371 ipTM=0.255 tol=6
2024-12-07 12:46:02,103 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=44 pTM=0.371 ipTM=0.251 tol=6.94
2024-12-07 12:47:27,844 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=44 pTM=0.369 ipTM=0.249 tol=9.96
2024-12-07 12:48:53,610 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=43.6 pTM=0.368 ipTM=0.252 tol=10
2024-12-07 12:50:19,374 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=43.9 pTM=0.368 ipTM=0.252 tol=8.91
2024-12-07 12:51:45,092 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=44 pTM=0.367 ipTM=0.25 tol=8.8
2024-12-07 12:51:45,094 alphafold2_multimer_v3_model_5_seed_000 took 2657.0s (30 recycles)
2024-12-07 12:51:46,671 reranking models by 'multimer' metric
2024-12-07 12:51:50,106 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 12:56:38,077 Relaxation took 291.4s
2024-12-07 12:56:38,077 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=44 pTM=0.367 ipTM=0.25
2024-12-07 13:00:30,529 Relaxation took 232.5s
2024-12-07 13:00:30,529 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=41 pTM=0.328 ipTM=0.255
2024-12-07 13:06:01,232 Relaxation took 330.7s
2024-12-07 13:06:01,232 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=42.7 pTM=0.349 ipTM=0.25
2024-12-07 13:10:21,886 Relaxation took 260.7s
2024-12-07 13:10:21,886 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=44.6 pTM=0.356 ipTM=0.207
2024-12-07 13:14:23,993 Relaxation took 242.1s
2024-12-07 13:14:23,993 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=47.2 pTM=0.361 ipTM=0.199
2024-12-07 13:14:27,735 Done