2024-12-07 09:11:58,552 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 09:11:58,870 Running on GPU
2024-12-07 09:12:02,835 Found 6 citations for tools or databases
2024-12-07 09:12:02,835 Query 1/1: NLE1_PLEKHO1 (length 894)
2024-12-07 09:12:03,134 Sleeping for 7s. Reason: PENDING
2024-12-07 09:12:10,396 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:12:20,654 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:12:28,920 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:12:35,181 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:12:40,437 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:12:50,698 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:12:55,958 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:13:01,219 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:13:10,479 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:13:19,738 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:13:28,001 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:13:33,266 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:13:39,526 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:13:48,799 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:13:56,058 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:14:01,324 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:14:10,584 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:14:15,853 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:14:26,119 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:14:36,381 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:14:42,644 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:14:52,519 Sleeping for 9s. Reason: PENDING
2024-12-07 09:15:01,784 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:15:07,048 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:15:15,316 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:15:25,580 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:15:30,845 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:15:36,098 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:15:43,367 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:15:52,634 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:16:02,903 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:16:13,162 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:16:19,421 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:16:25,691 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:16:32,957 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:16:40,218 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:16:49,475 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:16:59,734 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:17:07,753 Setting max_seq=508, max_extra_seq=2048
2024-12-07 09:19:54,142 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=63.9 pTM=0.54 ipTM=0.246
2024-12-07 09:20:10,699 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.2 pTM=0.548 ipTM=0.244 tol=15.2
2024-12-07 09:20:27,311 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=65.1 pTM=0.509 ipTM=0.307 tol=7.98
2024-12-07 09:20:43,959 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=66.6 pTM=0.533 ipTM=0.224 tol=3.89
2024-12-07 09:21:00,598 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=66.1 pTM=0.532 ipTM=0.241 tol=5.3
2024-12-07 09:21:17,257 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=66.2 pTM=0.538 ipTM=0.214 tol=3.39
2024-12-07 09:21:33,910 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=66.6 pTM=0.544 ipTM=0.258 tol=2.83
2024-12-07 09:21:50,563 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=66.2 pTM=0.542 ipTM=0.222 tol=2.13
2024-12-07 09:22:07,234 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=65.8 pTM=0.539 ipTM=0.2 tol=6.65
2024-12-07 09:22:23,919 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=66.1 pTM=0.54 ipTM=0.21 tol=5.81
2024-12-07 09:22:40,619 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=65.8 pTM=0.539 ipTM=0.218 tol=3.11
2024-12-07 09:22:57,350 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=66.4 pTM=0.542 ipTM=0.21 tol=4.79
2024-12-07 09:23:14,072 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=66 pTM=0.541 ipTM=0.193 tol=3.24
2024-12-07 09:23:30,792 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=66.4 pTM=0.545 ipTM=0.226 tol=6.77
2024-12-07 09:23:47,491 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=66.2 pTM=0.543 ipTM=0.203 tol=4.66
2024-12-07 09:24:04,178 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.9 pTM=0.54 ipTM=0.198 tol=2.03
2024-12-07 09:24:20,872 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.8 pTM=0.535 ipTM=0.214 tol=2.89
2024-12-07 09:24:37,576 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.9 pTM=0.539 ipTM=0.203 tol=2.5
2024-12-07 09:24:54,300 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=65.6 pTM=0.536 ipTM=0.211 tol=1.47
2024-12-07 09:25:11,013 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=65.8 pTM=0.536 ipTM=0.207 tol=3.64
2024-12-07 09:25:27,702 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=65.7 pTM=0.535 ipTM=0.203 tol=2.56
2024-12-07 09:25:44,372 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=65.6 pTM=0.534 ipTM=0.204 tol=2.35
2024-12-07 09:26:01,062 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=65.9 pTM=0.535 ipTM=0.198 tol=1.55
2024-12-07 09:26:17,749 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=66.1 pTM=0.539 ipTM=0.2 tol=2.21
2024-12-07 09:26:34,442 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=66 pTM=0.539 ipTM=0.212 tol=1.43
2024-12-07 09:26:51,156 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=65.7 pTM=0.538 ipTM=0.207 tol=3.11
2024-12-07 09:27:07,850 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65.7 pTM=0.532 ipTM=0.204 tol=3.08
2024-12-07 09:27:24,544 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=65.7 pTM=0.533 ipTM=0.205 tol=3.93
2024-12-07 09:27:41,253 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=65.4 pTM=0.539 ipTM=0.201 tol=3.93
2024-12-07 09:27:57,944 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=65.4 pTM=0.535 ipTM=0.176 tol=4.29
2024-12-07 09:28:14,669 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=66 pTM=0.541 ipTM=0.236 tol=5.12
2024-12-07 09:28:14,670 alphafold2_multimer_v3_model_1_seed_000 took 661.6s (30 recycles)
2024-12-07 09:28:31,960 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.7 pTM=0.558 ipTM=0.324
2024-12-07 09:28:48,774 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=66.6 pTM=0.556 ipTM=0.246 tol=14.4
2024-12-07 09:29:05,577 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=66.8 pTM=0.545 ipTM=0.262 tol=7.2
2024-12-07 09:29:22,389 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=67.2 pTM=0.552 ipTM=0.21 tol=5.45
2024-12-07 09:29:39,201 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=66.6 pTM=0.54 ipTM=0.24 tol=5.92
2024-12-07 09:29:56,001 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.2 pTM=0.552 ipTM=0.234 tol=8.05
2024-12-07 09:30:12,779 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.1 pTM=0.555 ipTM=0.216 tol=6.19
2024-12-07 09:30:29,566 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=66.9 pTM=0.551 ipTM=0.232 tol=3.55
2024-12-07 09:30:46,378 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=66.9 pTM=0.549 ipTM=0.194 tol=3.29
2024-12-07 09:31:03,171 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=66.7 pTM=0.547 ipTM=0.193 tol=4.87
2024-12-07 09:31:20,011 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=67.2 pTM=0.551 ipTM=0.258 tol=3.33
2024-12-07 09:31:36,798 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=67.9 pTM=0.559 ipTM=0.26 tol=3.72
2024-12-07 09:31:53,570 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=67.6 pTM=0.559 ipTM=0.261 tol=2.96
2024-12-07 09:32:10,350 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=67.5 pTM=0.556 ipTM=0.239 tol=4.84
2024-12-07 09:32:27,142 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=67.1 pTM=0.552 ipTM=0.237 tol=7.11
2024-12-07 09:32:43,922 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=67.2 pTM=0.557 ipTM=0.23 tol=8.51
2024-12-07 09:33:00,708 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=67.2 pTM=0.555 ipTM=0.204 tol=8.27
2024-12-07 09:33:17,486 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=67.6 pTM=0.556 ipTM=0.235 tol=4.5
2024-12-07 09:33:34,282 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=67.3 pTM=0.551 ipTM=0.208 tol=6.95
2024-12-07 09:33:51,057 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=66.6 pTM=0.552 ipTM=0.215 tol=7.82
2024-12-07 09:34:07,796 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=66.6 pTM=0.548 ipTM=0.237 tol=4.82
2024-12-07 09:34:24,641 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=66.6 pTM=0.547 ipTM=0.223 tol=4.48
2024-12-07 09:34:41,429 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=66.8 pTM=0.55 ipTM=0.218 tol=4.75
2024-12-07 09:34:58,181 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=66.8 pTM=0.55 ipTM=0.216 tol=4.7
2024-12-07 09:35:14,933 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=67.1 pTM=0.552 ipTM=0.209 tol=3.37
2024-12-07 09:35:31,701 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=66.8 pTM=0.554 ipTM=0.217 tol=2.66
2024-12-07 09:35:48,459 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=66.8 pTM=0.548 ipTM=0.207 tol=3.18
2024-12-07 09:36:05,236 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=66.8 pTM=0.551 ipTM=0.21 tol=2.72
2024-12-07 09:36:22,014 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=67.2 pTM=0.553 ipTM=0.197 tol=6.4
2024-12-07 09:36:38,779 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=67.4 pTM=0.561 ipTM=0.249 tol=6.12
2024-12-07 09:36:55,532 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=66.8 pTM=0.551 ipTM=0.203 tol=5.16
2024-12-07 09:36:55,533 alphafold2_multimer_v3_model_2_seed_000 took 520.4s (30 recycles)
2024-12-07 09:37:12,893 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=64.8 pTM=0.487 ipTM=0.283
2024-12-07 09:37:29,765 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.4 pTM=0.539 ipTM=0.306 tol=11.4
2024-12-07 09:37:46,599 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.2 pTM=0.525 ipTM=0.247 tol=8.88
2024-12-07 09:38:03,451 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=66.7 pTM=0.531 ipTM=0.234 tol=10.2
2024-12-07 09:38:20,299 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=66.1 pTM=0.523 ipTM=0.245 tol=9.77
2024-12-07 09:38:37,140 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=66.8 pTM=0.536 ipTM=0.231 tol=9.09
2024-12-07 09:38:53,947 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=66.4 pTM=0.529 ipTM=0.261 tol=9.69
2024-12-07 09:39:10,774 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=66.6 pTM=0.535 ipTM=0.265 tol=7.38
2024-12-07 09:39:27,578 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=66.8 pTM=0.535 ipTM=0.376 tol=8.86
2024-12-07 09:39:44,391 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=66.3 pTM=0.528 ipTM=0.246 tol=8.7
2024-12-07 09:40:01,186 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=66.4 pTM=0.532 ipTM=0.282 tol=8.28
2024-12-07 09:40:18,009 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=66.6 pTM=0.536 ipTM=0.284 tol=6.14
2024-12-07 09:40:34,868 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=66.2 pTM=0.53 ipTM=0.286 tol=4.84
2024-12-07 09:40:51,672 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=66.5 pTM=0.537 ipTM=0.267 tol=4.6
2024-12-07 09:41:08,457 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=66.2 pTM=0.532 ipTM=0.279 tol=3.71
2024-12-07 09:41:25,248 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=66.6 pTM=0.54 ipTM=0.315 tol=5.77
2024-12-07 09:41:42,051 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=66.2 pTM=0.536 ipTM=0.298 tol=5.09
2024-12-07 09:41:58,847 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=66.5 pTM=0.538 ipTM=0.401 tol=13.9
2024-12-07 09:42:15,663 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=65.9 pTM=0.531 ipTM=0.241 tol=11.4
2024-12-07 09:42:32,461 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=65.8 pTM=0.533 ipTM=0.271 tol=10.6
2024-12-07 09:42:49,279 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66 pTM=0.529 ipTM=0.239 tol=7.34
2024-12-07 09:43:06,062 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=65.9 pTM=0.534 ipTM=0.244 tol=7.38
2024-12-07 09:43:22,860 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=65.9 pTM=0.535 ipTM=0.24 tol=6.85
2024-12-07 09:43:39,707 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.2 pTM=0.537 ipTM=0.318 tol=5.74
2024-12-07 09:43:56,483 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=66.2 pTM=0.536 ipTM=0.26 tol=6.42
2024-12-07 09:44:13,265 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=65.9 pTM=0.538 ipTM=0.267 tol=4.57
2024-12-07 09:44:30,023 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=66 pTM=0.536 ipTM=0.265 tol=5.38
2024-12-07 09:44:46,809 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.1 pTM=0.538 ipTM=0.266 tol=6.78
2024-12-07 09:45:03,603 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=66.1 pTM=0.535 ipTM=0.249 tol=7.09
2024-12-07 09:45:20,388 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=66.1 pTM=0.536 ipTM=0.271 tol=4.62
2024-12-07 09:45:37,149 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=66 pTM=0.54 ipTM=0.241 tol=6.23
2024-12-07 09:45:37,149 alphafold2_multimer_v3_model_3_seed_000 took 521.1s (30 recycles)
2024-12-07 09:45:54,467 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=63.9 pTM=0.528 ipTM=0.28
2024-12-07 09:46:11,342 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=64 pTM=0.508 ipTM=0.303 tol=17.9
2024-12-07 09:46:28,207 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=64.9 pTM=0.533 ipTM=0.262 tol=6.66
2024-12-07 09:46:45,093 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=64.4 pTM=0.517 ipTM=0.215 tol=10.8
2024-12-07 09:47:01,967 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=64.7 pTM=0.517 ipTM=0.253 tol=11.2
2024-12-07 09:47:18,794 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=64.4 pTM=0.518 ipTM=0.222 tol=8.76
2024-12-07 09:47:35,596 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=64.9 pTM=0.521 ipTM=0.23 tol=6.72
2024-12-07 09:47:52,386 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=64.6 pTM=0.517 ipTM=0.221 tol=4.39
2024-12-07 09:48:09,167 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=64.7 pTM=0.513 ipTM=0.235 tol=5.02
2024-12-07 09:48:25,935 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=64.5 pTM=0.517 ipTM=0.225 tol=6.18
2024-12-07 09:48:42,692 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=64.4 pTM=0.516 ipTM=0.25 tol=3.77
2024-12-07 09:48:59,476 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=65 pTM=0.519 ipTM=0.241 tol=3.02
2024-12-07 09:49:16,239 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=64.4 pTM=0.511 ipTM=0.248 tol=3.15
2024-12-07 09:49:33,042 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=64.4 pTM=0.513 ipTM=0.224 tol=2.69
2024-12-07 09:49:49,846 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=64.6 pTM=0.514 ipTM=0.241 tol=4.08
2024-12-07 09:50:06,657 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=64.9 pTM=0.52 ipTM=0.229 tol=5.66
2024-12-07 09:50:23,508 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=65.1 pTM=0.513 ipTM=0.225 tol=7.22
2024-12-07 09:50:40,334 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=64.6 pTM=0.516 ipTM=0.218 tol=6.08
2024-12-07 09:50:57,164 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=64.7 pTM=0.514 ipTM=0.238 tol=6.32
2024-12-07 09:51:13,988 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=64.8 pTM=0.517 ipTM=0.243 tol=7.15
2024-12-07 09:51:30,790 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=65 pTM=0.514 ipTM=0.231 tol=5.93
2024-12-07 09:51:47,592 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=64.6 pTM=0.517 ipTM=0.22 tol=4.12
2024-12-07 09:52:04,389 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=64.4 pTM=0.51 ipTM=0.225 tol=3.62
2024-12-07 09:52:21,192 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=64.7 pTM=0.517 ipTM=0.225 tol=4.5
2024-12-07 09:52:38,003 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=64.9 pTM=0.52 ipTM=0.256 tol=5.14
2024-12-07 09:52:54,826 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=64.9 pTM=0.52 ipTM=0.241 tol=2.63
2024-12-07 09:53:11,643 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=64.9 pTM=0.514 ipTM=0.238 tol=1.74
2024-12-07 09:53:28,450 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=64.8 pTM=0.514 ipTM=0.227 tol=3.11
2024-12-07 09:53:45,296 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=64.7 pTM=0.517 ipTM=0.246 tol=3.58
2024-12-07 09:54:02,147 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=64.8 pTM=0.514 ipTM=0.219 tol=4.22
2024-12-07 09:54:18,967 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=64.6 pTM=0.515 ipTM=0.243 tol=3.84
2024-12-07 09:54:18,967 alphafold2_multimer_v3_model_4_seed_000 took 521.3s (30 recycles)
2024-12-07 09:54:36,337 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.8 pTM=0.574 ipTM=0.383
2024-12-07 09:54:53,233 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.2 pTM=0.53 ipTM=0.304 tol=8.11
2024-12-07 09:55:10,130 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66.4 pTM=0.531 ipTM=0.286 tol=8.63
2024-12-07 09:55:27,045 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.3 pTM=0.531 ipTM=0.26 tol=10.2
2024-12-07 09:55:43,974 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=66.5 pTM=0.542 ipTM=0.282 tol=4.61
2024-12-07 09:56:00,902 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=66.3 pTM=0.541 ipTM=0.29 tol=2.89
2024-12-07 09:56:17,833 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.2 pTM=0.543 ipTM=0.264 tol=3.93
2024-12-07 09:56:34,753 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=66.2 pTM=0.543 ipTM=0.283 tol=4.99
2024-12-07 09:56:51,634 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.1 pTM=0.541 ipTM=0.238 tol=6.36
2024-12-07 09:57:08,513 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=66.1 pTM=0.539 ipTM=0.268 tol=5.04
2024-12-07 09:57:25,371 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=65.9 pTM=0.542 ipTM=0.252 tol=3.27
2024-12-07 09:57:42,248 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.2 pTM=0.539 ipTM=0.295 tol=5.41
2024-12-07 09:57:59,147 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=65.8 pTM=0.539 ipTM=0.259 tol=4.61
2024-12-07 09:58:16,026 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=65.9 pTM=0.542 ipTM=0.271 tol=5.89
2024-12-07 09:58:32,880 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=66.1 pTM=0.547 ipTM=0.276 tol=6.67
2024-12-07 09:58:49,757 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=66.2 pTM=0.541 ipTM=0.278 tol=5.13
2024-12-07 09:59:06,622 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=65.9 pTM=0.544 ipTM=0.271 tol=5.91
2024-12-07 09:59:23,468 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=66.1 pTM=0.539 ipTM=0.21 tol=2.74
2024-12-07 09:59:40,353 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=66 pTM=0.541 ipTM=0.272 tol=3.82
2024-12-07 09:59:57,212 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=65.6 pTM=0.534 ipTM=0.272 tol=3.39
2024-12-07 10:00:14,064 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=65.8 pTM=0.537 ipTM=0.276 tol=6.65
2024-12-07 10:00:30,939 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=65.9 pTM=0.538 ipTM=0.269 tol=4.48
2024-12-07 10:00:47,800 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=66 pTM=0.548 ipTM=0.278 tol=4.2
2024-12-07 10:01:04,662 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66.4 pTM=0.541 ipTM=0.281 tol=3.87
2024-12-07 10:01:21,529 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=66.1 pTM=0.546 ipTM=0.277 tol=4.6
2024-12-07 10:01:38,410 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=66.1 pTM=0.538 ipTM=0.277 tol=4.14
2024-12-07 10:01:55,276 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=65.8 pTM=0.538 ipTM=0.257 tol=5.49
2024-12-07 10:02:12,149 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66 pTM=0.541 ipTM=0.262 tol=3.43
2024-12-07 10:02:29,011 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=66.1 pTM=0.545 ipTM=0.272 tol=4.57
2024-12-07 10:02:45,877 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=66.3 pTM=0.54 ipTM=0.285 tol=4.81
2024-12-07 10:03:02,746 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.7 pTM=0.542 ipTM=0.267 tol=4.63
2024-12-07 10:03:02,747 alphafold2_multimer_v3_model_5_seed_000 took 523.3s (30 recycles)
2024-12-07 10:03:03,247 reranking models by 'multimer' metric
2024-12-07 10:03:06,808 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 10:04:13,500 Relaxation took 70.3s
2024-12-07 10:04:13,500 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.7 pTM=0.542 ipTM=0.267
2024-12-07 10:05:46,634 Relaxation took 93.1s
2024-12-07 10:05:46,634 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=66 pTM=0.54 ipTM=0.241
2024-12-07 10:06:48,432 Relaxation took 61.8s
2024-12-07 10:06:48,432 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=64.6 pTM=0.515 ipTM=0.243
2024-12-07 10:08:14,769 Relaxation took 86.3s
2024-12-07 10:08:14,769 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=66 pTM=0.541 ipTM=0.236
2024-12-07 10:09:23,627 Relaxation took 68.9s
2024-12-07 10:09:23,627 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=66.8 pTM=0.551 ipTM=0.203
2024-12-07 10:09:25,264 Done