2024-12-07 09:27:10,473 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 09:27:10,779 Running on GPU
2024-12-07 09:27:14,177 Found 6 citations for tools or databases
2024-12-07 09:27:14,177 Query 1/1: NLE1_PNMAL1 (length 924)
2024-12-07 09:27:14,468 Sleeping for 5s. Reason: PENDING
2024-12-07 09:27:19,718 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:27:25,981 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:27:32,234 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:27:42,493 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:27:51,751 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:27:59,012 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:28:04,273 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:28:11,531 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:28:19,791 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:28:27,052 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:28:34,316 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:28:39,577 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:28:49,834 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:28:55,094 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:29:02,348 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:29:08,608 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:29:17,860 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:29:28,132 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:29:36,393 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:29:43,653 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:29:51,913 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:30:02,180 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:30:07,432 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:30:16,691 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:30:21,947 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:30:30,217 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:30:40,444 Sleeping for 9s. Reason: PENDING
2024-12-07 09:30:49,706 Sleeping for 5s. Reason: PENDING
2024-12-07 09:30:54,965 Sleeping for 9s. Reason: PENDING
2024-12-07 09:31:04,219 Sleeping for 9s. Reason: PENDING
2024-12-07 09:31:13,476 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:31:19,752 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:31:28,016 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:31:36,269 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:31:41,526 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:31:50,782 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:31:57,034 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:32:03,299 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:32:12,560 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:32:18,823 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:32:25,085 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:32:35,348 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:32:46,150 Setting max_seq=508, max_extra_seq=2048
2024-12-07 09:35:13,859 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61 pTM=0.521 ipTM=0.214
2024-12-07 09:35:31,834 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=61.9 pTM=0.51 ipTM=0.198 tol=16.3
2024-12-07 09:35:49,809 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.9 pTM=0.49 ipTM=0.196 tol=8.49
2024-12-07 09:36:07,821 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=62 pTM=0.512 ipTM=0.187 tol=7.16
2024-12-07 09:36:25,876 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=61.9 pTM=0.516 ipTM=0.191 tol=9.41
2024-12-07 09:36:43,956 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=62 pTM=0.523 ipTM=0.204 tol=7.48
2024-12-07 09:37:02,099 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=62 pTM=0.522 ipTM=0.203 tol=7.54
2024-12-07 09:37:20,215 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61.8 pTM=0.52 ipTM=0.185 tol=7.84
2024-12-07 09:37:38,331 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=61.6 pTM=0.519 ipTM=0.187 tol=4.43
2024-12-07 09:37:56,453 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=61.8 pTM=0.522 ipTM=0.205 tol=8.55
2024-12-07 09:38:14,563 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=62.2 pTM=0.524 ipTM=0.229 tol=6.71
2024-12-07 09:38:32,670 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.4 pTM=0.529 ipTM=0.24 tol=9.21
2024-12-07 09:38:50,803 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=62.4 pTM=0.527 ipTM=0.224 tol=8.96
2024-12-07 09:39:08,905 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.7 pTM=0.523 ipTM=0.203 tol=5.46
2024-12-07 09:39:27,021 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61.5 pTM=0.518 ipTM=0.203 tol=7
2024-12-07 09:39:45,145 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.2 pTM=0.527 ipTM=0.239 tol=4.43
2024-12-07 09:40:03,281 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=62.6 pTM=0.525 ipTM=0.217 tol=5.63
2024-12-07 09:40:21,394 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=61.8 pTM=0.52 ipTM=0.192 tol=6.21
2024-12-07 09:40:39,507 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=61.5 pTM=0.517 ipTM=0.189 tol=4.13
2024-12-07 09:40:57,611 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=61.9 pTM=0.522 ipTM=0.233 tol=5.82
2024-12-07 09:41:15,755 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=62.8 pTM=0.532 ipTM=0.257 tol=6.52
2024-12-07 09:41:33,895 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61.9 pTM=0.522 ipTM=0.194 tol=11.2
2024-12-07 09:41:52,009 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=61.7 pTM=0.521 ipTM=0.202 tol=5.04
2024-12-07 09:42:10,152 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=61.6 pTM=0.517 ipTM=0.192 tol=4.64
2024-12-07 09:42:28,313 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=61.7 pTM=0.519 ipTM=0.198 tol=6.46
2024-12-07 09:42:46,501 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=61.9 pTM=0.522 ipTM=0.196 tol=7.82
2024-12-07 09:43:04,699 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=62.6 pTM=0.529 ipTM=0.241 tol=6.39
2024-12-07 09:43:22,871 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=62 pTM=0.524 ipTM=0.234 tol=5.32
2024-12-07 09:43:41,031 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62 pTM=0.518 ipTM=0.219 tol=6.8
2024-12-07 09:43:59,200 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=62.3 pTM=0.525 ipTM=0.222 tol=11.4
2024-12-07 09:44:17,344 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=61.4 pTM=0.515 ipTM=0.199 tol=9.81
2024-12-07 09:44:17,345 alphafold2_multimer_v3_model_1_seed_000 took 685.4s (30 recycles)
2024-12-07 09:44:36,077 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=63.1 pTM=0.588 ipTM=0.68
2024-12-07 09:44:54,300 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=65.1 pTM=0.597 ipTM=0.572 tol=14.3
2024-12-07 09:45:12,506 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=66.4 pTM=0.615 ipTM=0.702 tol=9.8
2024-12-07 09:45:30,740 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=67.2 pTM=0.625 ipTM=0.771 tol=8.17
2024-12-07 09:45:48,953 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=67.2 pTM=0.623 ipTM=0.719 tol=12.2
2024-12-07 09:46:07,149 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.2 pTM=0.621 ipTM=0.712 tol=3.93
2024-12-07 09:46:25,356 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.2 pTM=0.619 ipTM=0.702 tol=3.45
2024-12-07 09:46:43,560 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=67.3 pTM=0.621 ipTM=0.721 tol=1.95
2024-12-07 09:47:01,769 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=67.2 pTM=0.621 ipTM=0.721 tol=2.97
2024-12-07 09:47:19,981 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=67.2 pTM=0.621 ipTM=0.731 tol=4.58
2024-12-07 09:47:38,178 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=67.1 pTM=0.617 ipTM=0.722 tol=5.9
2024-12-07 09:47:56,384 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=67.3 pTM=0.622 ipTM=0.728 tol=5.68
2024-12-07 09:48:14,593 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=67.2 pTM=0.62 ipTM=0.709 tol=3.36
2024-12-07 09:48:32,799 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=67.3 pTM=0.625 ipTM=0.724 tol=2.04
2024-12-07 09:48:50,999 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=67.3 pTM=0.625 ipTM=0.734 tol=1.26
2024-12-07 09:49:09,198 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=67.6 pTM=0.629 ipTM=0.741 tol=1.28
2024-12-07 09:49:27,386 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=67.4 pTM=0.624 ipTM=0.736 tol=1.38
2024-12-07 09:49:45,587 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=67.5 pTM=0.629 ipTM=0.748 tol=1.18
2024-12-07 09:50:03,782 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=67.5 pTM=0.629 ipTM=0.75 tol=1.04
2024-12-07 09:50:21,983 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=67.6 pTM=0.629 ipTM=0.74 tol=1.29
2024-12-07 09:50:40,170 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=67.4 pTM=0.628 ipTM=0.743 tol=1.06
2024-12-07 09:50:58,366 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=67.5 pTM=0.628 ipTM=0.741 tol=0.856
2024-12-07 09:51:16,550 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=67.4 pTM=0.626 ipTM=0.736 tol=1.14
2024-12-07 09:51:34,717 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=67.3 pTM=0.625 ipTM=0.732 tol=1.27
2024-12-07 09:51:52,910 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=67.6 pTM=0.63 ipTM=0.742 tol=0.902
2024-12-07 09:52:11,113 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=67.8 pTM=0.635 ipTM=0.766 tol=0.91
2024-12-07 09:52:29,303 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=67.6 pTM=0.63 ipTM=0.755 tol=1.16
2024-12-07 09:52:47,497 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=67.7 pTM=0.631 ipTM=0.757 tol=1.16
2024-12-07 09:53:05,701 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=67.4 pTM=0.624 ipTM=0.731 tol=1.15
2024-12-07 09:53:23,917 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=67.8 pTM=0.632 ipTM=0.745 tol=0.937
2024-12-07 09:53:42,117 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=67.4 pTM=0.624 ipTM=0.729 tol=1.12
2024-12-07 09:53:42,118 alphafold2_multimer_v3_model_2_seed_000 took 564.2s (30 recycles)
2024-12-07 09:54:00,913 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=63.1 pTM=0.588 ipTM=0.704
2024-12-07 09:54:19,230 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=65.2 pTM=0.596 ipTM=0.673 tol=8.81
2024-12-07 09:54:37,537 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=65.4 pTM=0.589 ipTM=0.757 tol=7.48
2024-12-07 09:54:55,820 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=65.6 pTM=0.594 ipTM=0.763 tol=9.99
2024-12-07 09:55:14,112 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=65.6 pTM=0.594 ipTM=0.758 tol=8.12
2024-12-07 09:55:32,397 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=65.5 pTM=0.595 ipTM=0.752 tol=5.64
2024-12-07 09:55:50,685 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=65.8 pTM=0.6 ipTM=0.766 tol=7.12
2024-12-07 09:56:08,974 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=65.6 pTM=0.598 ipTM=0.76 tol=5.4
2024-12-07 09:56:27,242 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=65.6 pTM=0.597 ipTM=0.761 tol=5.61
2024-12-07 09:56:45,511 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=65.6 pTM=0.598 ipTM=0.756 tol=5.27
2024-12-07 09:57:03,786 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=65.9 pTM=0.606 ipTM=0.778 tol=4.61
2024-12-07 09:57:22,053 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=65.8 pTM=0.604 ipTM=0.768 tol=5.75
2024-12-07 09:57:40,330 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=65.9 pTM=0.607 ipTM=0.775 tol=3.9
2024-12-07 09:57:58,586 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=65.8 pTM=0.604 ipTM=0.761 tol=3.85
2024-12-07 09:58:16,862 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=66 pTM=0.606 ipTM=0.769 tol=4
2024-12-07 09:58:35,131 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=66.1 pTM=0.609 ipTM=0.771 tol=3.75
2024-12-07 09:58:53,414 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=66.1 pTM=0.609 ipTM=0.772 tol=3.61
2024-12-07 09:59:11,671 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=65.9 pTM=0.606 ipTM=0.755 tol=2.76
2024-12-07 09:59:29,937 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=66.2 pTM=0.613 ipTM=0.774 tol=2.21
2024-12-07 09:59:48,202 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=66.3 pTM=0.615 ipTM=0.777 tol=2.56
2024-12-07 10:00:06,478 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66.4 pTM=0.618 ipTM=0.787 tol=1.97
2024-12-07 10:00:24,745 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=66.3 pTM=0.615 ipTM=0.771 tol=2.14
2024-12-07 10:00:43,000 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=66.2 pTM=0.614 ipTM=0.771 tol=1.09
2024-12-07 10:01:01,252 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.1 pTM=0.61 ipTM=0.755 tol=1.41
2024-12-07 10:01:19,517 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=66.3 pTM=0.617 ipTM=0.777 tol=1.36
2024-12-07 10:01:37,782 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=66.2 pTM=0.615 ipTM=0.765 tol=2.31
2024-12-07 10:01:56,045 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=66.2 pTM=0.615 ipTM=0.773 tol=1.32
2024-12-07 10:02:14,282 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.1 pTM=0.614 ipTM=0.765 tol=1.8
2024-12-07 10:02:32,496 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=66.1 pTM=0.612 ipTM=0.762 tol=1.66
2024-12-07 10:02:50,716 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=66.2 pTM=0.613 ipTM=0.765 tol=1.4
2024-12-07 10:03:08,932 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=66.1 pTM=0.612 ipTM=0.76 tol=1.43
2024-12-07 10:03:08,933 alphafold2_multimer_v3_model_3_seed_000 took 566.3s (30 recycles)
2024-12-07 10:03:27,680 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=58 pTM=0.492 ipTM=0.193
2024-12-07 10:03:45,915 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=61.2 pTM=0.555 ipTM=0.53 tol=16.4
2024-12-07 10:04:04,120 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.7 pTM=0.526 ipTM=0.325 tol=7.51
2024-12-07 10:04:22,319 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=60.2 pTM=0.515 ipTM=0.282 tol=8.39
2024-12-07 10:04:40,505 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=60.2 pTM=0.519 ipTM=0.242 tol=7.81
2024-12-07 10:04:58,692 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=60.4 pTM=0.519 ipTM=0.282 tol=6.46
2024-12-07 10:05:16,882 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=60.6 pTM=0.521 ipTM=0.26 tol=3.08
2024-12-07 10:05:35,058 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=60.7 pTM=0.522 ipTM=0.301 tol=6.51
2024-12-07 10:05:53,244 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=60.8 pTM=0.526 ipTM=0.27 tol=6.34
2024-12-07 10:06:11,432 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=60.4 pTM=0.521 ipTM=0.286 tol=3.95
2024-12-07 10:06:29,608 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=60.5 pTM=0.521 ipTM=0.235 tol=3.2
2024-12-07 10:06:47,803 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=60.8 pTM=0.516 ipTM=0.203 tol=4.52
2024-12-07 10:07:05,988 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=60.4 pTM=0.521 ipTM=0.226 tol=4.38
2024-12-07 10:07:24,206 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=61 pTM=0.517 ipTM=0.198 tol=5.93
2024-12-07 10:07:42,388 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=60.5 pTM=0.521 ipTM=0.233 tol=6.04
2024-12-07 10:08:00,624 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=61.1 pTM=0.518 ipTM=0.202 tol=4.73
2024-12-07 10:08:18,810 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=60.3 pTM=0.521 ipTM=0.2 tol=2.77
2024-12-07 10:08:37,021 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=60.5 pTM=0.52 ipTM=0.201 tol=3.57
2024-12-07 10:08:55,215 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=60.1 pTM=0.521 ipTM=0.203 tol=4.63
2024-12-07 10:09:13,424 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=60.4 pTM=0.521 ipTM=0.207 tol=2.84
2024-12-07 10:09:31,624 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=60.4 pTM=0.522 ipTM=0.191 tol=4.43
2024-12-07 10:09:49,829 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=61.9 pTM=0.546 ipTM=0.33 tol=6.38
2024-12-07 10:10:08,012 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=60.6 pTM=0.533 ipTM=0.265 tol=4.92
2024-12-07 10:10:26,206 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=60.6 pTM=0.528 ipTM=0.269 tol=5.93
2024-12-07 10:10:44,391 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=60.7 pTM=0.532 ipTM=0.272 tol=4.7
2024-12-07 10:11:02,558 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=60.9 pTM=0.535 ipTM=0.298 tol=2.5
2024-12-07 10:11:20,743 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=60.7 pTM=0.528 ipTM=0.241 tol=3.32
2024-12-07 10:11:38,958 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=60.8 pTM=0.522 ipTM=0.221 tol=3.34
2024-12-07 10:11:57,122 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=60.5 pTM=0.526 ipTM=0.245 tol=3.09
2024-12-07 10:12:15,331 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.6 pTM=0.52 ipTM=0.224 tol=3.46
2024-12-07 10:12:33,495 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=60.2 pTM=0.521 ipTM=0.199 tol=5.22
2024-12-07 10:12:33,496 alphafold2_multimer_v3_model_4_seed_000 took 564.0s (30 recycles)
2024-12-07 10:12:52,287 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=60.7 pTM=0.501 ipTM=0.208
2024-12-07 10:13:10,574 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=61.2 pTM=0.502 ipTM=0.193 tol=14.5
2024-12-07 10:13:28,848 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.7 pTM=0.504 ipTM=0.194 tol=13.1
2024-12-07 10:13:47,141 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=63.7 pTM=0.57 ipTM=0.565 tol=13.1
2024-12-07 10:14:05,431 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=64.1 pTM=0.563 ipTM=0.507 tol=8.41
2024-12-07 10:14:23,752 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.7 pTM=0.52 ipTM=0.209 tol=7.77
2024-12-07 10:14:42,074 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=63.2 pTM=0.544 ipTM=0.363 tol=12.6
2024-12-07 10:15:00,392 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=63 pTM=0.524 ipTM=0.239 tol=7.87
2024-12-07 10:15:18,722 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=62.5 pTM=0.518 ipTM=0.19 tol=9.46
2024-12-07 10:15:37,069 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.5 pTM=0.518 ipTM=0.2 tol=8.55
2024-12-07 10:15:55,415 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=62.2 pTM=0.518 ipTM=0.188 tol=6.7
2024-12-07 10:16:13,744 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.1 pTM=0.516 ipTM=0.186 tol=6.39
2024-12-07 10:16:32,106 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62.6 pTM=0.522 ipTM=0.194 tol=5.36
2024-12-07 10:16:50,443 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.2 pTM=0.515 ipTM=0.184 tol=3.73
2024-12-07 10:17:08,767 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.1 pTM=0.517 ipTM=0.189 tol=7.13
2024-12-07 10:17:27,063 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=63 pTM=0.543 ipTM=0.35 tol=9.2
2024-12-07 10:17:45,350 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.8 pTM=0.53 ipTM=0.234 tol=6.12
2024-12-07 10:18:03,671 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.4 pTM=0.523 ipTM=0.2 tol=8.98
2024-12-07 10:18:21,990 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.9 pTM=0.527 ipTM=0.209 tol=9.43
2024-12-07 10:18:40,297 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.7 pTM=0.52 ipTM=0.192 tol=5.9
2024-12-07 10:18:58,610 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.3 pTM=0.517 ipTM=0.18 tol=6
2024-12-07 10:19:16,916 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62.3 pTM=0.522 ipTM=0.189 tol=5.84
2024-12-07 10:19:35,241 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62.1 pTM=0.52 ipTM=0.188 tol=4.43
2024-12-07 10:19:53,546 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=64.8 pTM=0.588 ipTM=0.656 tol=5.63
2024-12-07 10:20:11,851 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=64 pTM=0.549 ipTM=0.35 tol=5.57
2024-12-07 10:20:30,157 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.7 pTM=0.53 ipTM=0.237 tol=4.36
2024-12-07 10:20:48,464 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=64 pTM=0.568 ipTM=0.532 tol=4.45
2024-12-07 10:21:06,775 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=63.3 pTM=0.526 ipTM=0.221 tol=6.48
2024-12-07 10:21:25,069 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.8 pTM=0.528 ipTM=0.264 tol=11.6
2024-12-07 10:21:43,387 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.8 pTM=0.529 ipTM=0.237 tol=7.32
2024-12-07 10:22:01,709 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.2 pTM=0.519 ipTM=0.191 tol=8.23
2024-12-07 10:22:01,709 alphafold2_multimer_v3_model_5_seed_000 took 567.7s (30 recycles)
2024-12-07 10:22:02,240 reranking models by 'multimer' metric
2024-12-07 10:22:05,759 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 10:22:59,046 Relaxation took 56.8s
2024-12-07 10:22:59,047 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=66.1 pTM=0.612 ipTM=0.76
2024-12-07 10:24:01,340 Relaxation took 62.3s
2024-12-07 10:24:01,340 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=67.4 pTM=0.624 ipTM=0.729
2024-12-07 10:25:17,606 Relaxation took 76.3s
2024-12-07 10:25:17,606 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=60.2 pTM=0.521 ipTM=0.199
2024-12-07 10:27:03,728 Relaxation took 106.1s
2024-12-07 10:27:03,728 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=61.4 pTM=0.515 ipTM=0.199
2024-12-07 10:27:58,217 Relaxation took 54.5s
2024-12-07 10:27:58,217 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.2 pTM=0.519 ipTM=0.191
2024-12-07 10:27:59,986 Done