2024-12-07 09:37:08,552 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 09:37:08,874 Running on GPU
2024-12-07 09:37:13,086 Found 6 citations for tools or databases
2024-12-07 09:37:13,086 Query 1/1: NSMCE1_EID3 (length 599)
2024-12-07 09:37:13,391 Sleeping for 6s. Reason: PENDING
2024-12-07 09:37:19,646 Sleeping for 7s. Reason: RUNNING
2024-12-07 09:37:26,904 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:37:36,175 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:37:41,443 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:37:50,698 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:38:00,958 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:38:07,216 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:38:13,483 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:38:23,745 Sleeping for 10s. Reason: RUNNING
2024-12-07 09:38:35,302 Sleeping for 8s. Reason: PENDING
2024-12-07 09:38:43,559 Sleeping for 8s. Reason: RUNNING
2024-12-07 09:38:51,814 Sleeping for 9s. Reason: RUNNING
2024-12-07 09:39:01,078 Sleeping for 5s. Reason: RUNNING
2024-12-07 09:39:06,335 Sleeping for 6s. Reason: RUNNING
2024-12-07 09:39:14,570 Setting max_seq=508, max_extra_seq=2048
2024-12-07 09:41:58,774 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.9 pTM=0.494 ipTM=0.761
2024-12-07 09:42:06,032 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.6 pTM=0.497 ipTM=0.766 tol=3.41
2024-12-07 09:42:13,275 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=70.8 pTM=0.502 ipTM=0.762 tol=1.76
2024-12-07 09:42:20,519 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=71 pTM=0.502 ipTM=0.775 tol=2.64
2024-12-07 09:42:27,790 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=70.7 pTM=0.501 ipTM=0.779 tol=2.24
2024-12-07 09:42:35,053 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=70.8 pTM=0.504 ipTM=0.784 tol=1.71
2024-12-07 09:42:42,333 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=71.1 pTM=0.504 ipTM=0.784 tol=0.75
2024-12-07 09:42:49,629 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=71.2 pTM=0.502 ipTM=0.783 tol=1.1
2024-12-07 09:42:56,921 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=70.9 pTM=0.501 ipTM=0.784 tol=0.814
2024-12-07 09:43:04,224 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=71.1 pTM=0.502 ipTM=0.791 tol=0.662
2024-12-07 09:43:11,532 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=71 pTM=0.501 ipTM=0.789 tol=0.74
2024-12-07 09:43:18,839 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=70.8 pTM=0.502 ipTM=0.787 tol=0.712
2024-12-07 09:43:26,158 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=70.9 pTM=0.501 ipTM=0.785 tol=0.995
2024-12-07 09:43:33,470 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=70.8 pTM=0.499 ipTM=0.786 tol=0.775
2024-12-07 09:43:40,790 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=70.7 pTM=0.501 ipTM=0.787 tol=0.821
2024-12-07 09:43:48,110 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=70.7 pTM=0.499 ipTM=0.787 tol=0.751
2024-12-07 09:43:55,436 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=70.9 pTM=0.502 ipTM=0.791 tol=0.532
2024-12-07 09:44:02,763 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=70.6 pTM=0.503 ipTM=0.789 tol=1.03
2024-12-07 09:44:10,083 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=70.8 pTM=0.501 ipTM=0.784 tol=0.628
2024-12-07 09:44:17,407 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=71 pTM=0.503 ipTM=0.787 tol=0.941
2024-12-07 09:44:24,731 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=71.1 pTM=0.504 ipTM=0.791 tol=0.478
2024-12-07 09:44:24,732 alphafold2_multimer_v3_model_1_seed_000 took 304.6s (20 recycles)
2024-12-07 09:44:32,267 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=69.6 pTM=0.485 ipTM=0.638
2024-12-07 09:44:39,594 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.9 pTM=0.49 ipTM=0.739 tol=3.03
2024-12-07 09:44:46,915 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71 pTM=0.495 ipTM=0.748 tol=2.01
2024-12-07 09:44:54,221 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.7 pTM=0.503 ipTM=0.76 tol=3.69
2024-12-07 09:45:01,529 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=71.6 pTM=0.506 ipTM=0.754 tol=1.43
2024-12-07 09:45:08,827 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.1 pTM=0.515 ipTM=0.764 tol=1.07
2024-12-07 09:45:16,137 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=72.4 pTM=0.519 ipTM=0.764 tol=0.738
2024-12-07 09:45:23,457 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=72.6 pTM=0.521 ipTM=0.767 tol=0.509
2024-12-07 09:45:30,764 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=72.4 pTM=0.516 ipTM=0.768 tol=0.643
2024-12-07 09:45:38,081 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=72.6 pTM=0.516 ipTM=0.774 tol=0.724
2024-12-07 09:45:45,384 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=72.8 pTM=0.521 ipTM=0.777 tol=0.644
2024-12-07 09:45:52,701 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=72.4 pTM=0.521 ipTM=0.774 tol=0.77
2024-12-07 09:46:00,018 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=72.5 pTM=0.522 ipTM=0.771 tol=0.608
2024-12-07 09:46:07,319 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=72.3 pTM=0.518 ipTM=0.769 tol=0.474
2024-12-07 09:46:07,319 alphafold2_multimer_v3_model_2_seed_000 took 102.3s (13 recycles)
2024-12-07 09:46:14,851 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=65.8 pTM=0.484 ipTM=0.622
2024-12-07 09:46:22,154 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=69.4 pTM=0.482 ipTM=0.713 tol=4.73
2024-12-07 09:46:29,463 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.9 pTM=0.485 ipTM=0.725 tol=4.54
2024-12-07 09:46:36,765 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69.6 pTM=0.482 ipTM=0.727 tol=1.63
2024-12-07 09:46:44,069 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=69.4 pTM=0.484 ipTM=0.72 tol=0.693
2024-12-07 09:46:51,372 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70 pTM=0.488 ipTM=0.73 tol=1.32
2024-12-07 09:46:58,670 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=69.9 pTM=0.489 ipTM=0.73 tol=0.681
2024-12-07 09:47:05,969 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=69.9 pTM=0.491 ipTM=0.727 tol=0.696
2024-12-07 09:47:13,268 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=69.9 pTM=0.49 ipTM=0.734 tol=0.39
2024-12-07 09:47:13,268 alphafold2_multimer_v3_model_3_seed_000 took 65.7s (8 recycles)
2024-12-07 09:47:20,833 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=65.7 pTM=0.462 ipTM=0.399
2024-12-07 09:47:28,153 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.9 pTM=0.479 ipTM=0.562 tol=5.5
2024-12-07 09:47:35,485 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=69.3 pTM=0.486 ipTM=0.719 tol=3.8
2024-12-07 09:47:42,819 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=69.2 pTM=0.49 ipTM=0.731 tol=4.44
2024-12-07 09:47:50,143 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69.6 pTM=0.489 ipTM=0.715 tol=2.13
2024-12-07 09:47:57,467 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=70 pTM=0.492 ipTM=0.746 tol=1.73
2024-12-07 09:48:04,785 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=70.3 pTM=0.499 ipTM=0.743 tol=1.16
2024-12-07 09:48:12,105 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70.1 pTM=0.499 ipTM=0.732 tol=1.43
2024-12-07 09:48:19,426 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.9 pTM=0.496 ipTM=0.736 tol=1.46
2024-12-07 09:48:26,741 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=70.2 pTM=0.5 ipTM=0.739 tol=0.802
2024-12-07 09:48:34,054 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=70.6 pTM=0.508 ipTM=0.744 tol=1.08
2024-12-07 09:48:41,363 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=70.4 pTM=0.507 ipTM=0.757 tol=0.613
2024-12-07 09:48:48,668 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=70.4 pTM=0.503 ipTM=0.747 tol=1.42
2024-12-07 09:48:55,983 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=70.3 pTM=0.503 ipTM=0.732 tol=1.75
2024-12-07 09:49:03,302 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=70.2 pTM=0.507 ipTM=0.741 tol=0.759
2024-12-07 09:49:10,618 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=70.6 pTM=0.507 ipTM=0.749 tol=1.04
2024-12-07 09:49:17,937 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=70.5 pTM=0.507 ipTM=0.755 tol=1.01
2024-12-07 09:49:25,238 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=70 pTM=0.504 ipTM=0.746 tol=0.634
2024-12-07 09:49:32,538 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=70 pTM=0.503 ipTM=0.739 tol=0.865
2024-12-07 09:49:39,851 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=70.5 pTM=0.512 ipTM=0.756 tol=1.02
2024-12-07 09:49:47,179 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=70.4 pTM=0.505 ipTM=0.762 tol=1.24
2024-12-07 09:49:54,493 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=70.8 pTM=0.51 ipTM=0.754 tol=1.51
2024-12-07 09:50:01,806 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=70.6 pTM=0.509 ipTM=0.76 tol=1.22
2024-12-07 09:50:09,123 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=70.8 pTM=0.509 ipTM=0.752 tol=2.13
2024-12-07 09:50:16,443 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=70.7 pTM=0.51 ipTM=0.756 tol=1.88
2024-12-07 09:50:23,768 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=71.1 pTM=0.515 ipTM=0.758 tol=0.918
2024-12-07 09:50:31,088 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=70.9 pTM=0.511 ipTM=0.752 tol=1.45
2024-12-07 09:50:38,404 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=71.4 pTM=0.514 ipTM=0.754 tol=1.08
2024-12-07 09:50:45,719 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=71.3 pTM=0.513 ipTM=0.754 tol=1.15
2024-12-07 09:50:53,026 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=70.8 pTM=0.507 ipTM=0.752 tol=1.14
2024-12-07 09:51:00,354 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=70.5 pTM=0.506 ipTM=0.756 tol=1.3
2024-12-07 09:51:00,354 alphafold2_multimer_v3_model_4_seed_000 took 226.8s (30 recycles)
2024-12-07 09:51:07,908 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.2 pTM=0.501 ipTM=0.569
2024-12-07 09:51:15,249 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=68.8 pTM=0.496 ipTM=0.754 tol=5.77
2024-12-07 09:51:22,579 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=69.7 pTM=0.507 ipTM=0.772 tol=4.48
2024-12-07 09:51:29,896 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=69.6 pTM=0.51 ipTM=0.771 tol=1.73
2024-12-07 09:51:37,214 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69.8 pTM=0.517 ipTM=0.766 tol=0.833
2024-12-07 09:51:44,522 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=70.2 pTM=0.529 ipTM=0.78 tol=0.788
2024-12-07 09:51:51,849 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=70.6 pTM=0.536 ipTM=0.779 tol=0.719
2024-12-07 09:51:59,162 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=70.7 pTM=0.536 ipTM=0.781 tol=0.559
2024-12-07 09:52:06,473 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=70.6 pTM=0.535 ipTM=0.784 tol=0.415
2024-12-07 09:52:06,473 alphafold2_multimer_v3_model_5_seed_000 took 65.9s (8 recycles)
2024-12-07 09:52:06,711 reranking models by 'multimer' metric
2024-12-07 09:52:09,655 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 09:52:28,079 Relaxation took 21.4s
2024-12-07 09:52:28,079 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=70.6 pTM=0.535 ipTM=0.784
2024-12-07 09:53:08,092 Relaxation took 40.0s
2024-12-07 09:53:08,092 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=71.1 pTM=0.504 ipTM=0.791
2024-12-07 09:53:19,919 Relaxation took 11.8s
2024-12-07 09:53:19,919 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=72.3 pTM=0.518 ipTM=0.769
2024-12-07 09:53:43,498 Relaxation took 23.6s
2024-12-07 09:53:43,498 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=70.5 pTM=0.506 ipTM=0.756
2024-12-07 09:53:57,222 Relaxation took 13.7s
2024-12-07 09:53:57,222 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=69.9 pTM=0.49 ipTM=0.734
2024-12-07 09:53:58,372 Done