2024-12-07 12:50:22,003 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 12:50:22,337 Running on GPU
2024-12-07 12:50:26,341 Found 6 citations for tools or databases
2024-12-07 12:50:26,342 Query 1/1: PJA1_NCAPH2 (length 1248)
2024-12-07 12:50:26,627 Sleeping for 6s. Reason: PENDING
2024-12-07 12:50:32,882 Sleeping for 10s. Reason: RUNNING
2024-12-07 12:50:43,142 Sleeping for 8s. Reason: RUNNING
2024-12-07 12:50:51,402 Sleeping for 10s. Reason: RUNNING
2024-12-07 12:51:01,660 Sleeping for 6s. Reason: RUNNING
2024-12-07 12:51:08,069 Sleeping for 5s. Reason: RUNNING
2024-12-07 12:51:13,325 Sleeping for 8s. Reason: RUNNING
2024-12-07 12:51:21,587 Sleeping for 10s. Reason: RUNNING
2024-12-07 12:51:31,844 Sleeping for 6s. Reason: RUNNING
2024-12-07 12:51:38,109 Sleeping for 7s. Reason: RUNNING
2024-12-07 12:51:45,367 Sleeping for 9s. Reason: RUNNING
2024-12-07 12:51:54,628 Sleeping for 8s. Reason: RUNNING
2024-12-07 12:52:02,890 Sleeping for 10s. Reason: RUNNING
2024-12-07 12:52:13,146 Sleeping for 5s. Reason: RUNNING
2024-12-07 12:52:18,404 Sleeping for 7s. Reason: RUNNING
2024-12-07 12:52:27,268 Sleeping for 8s. Reason: PENDING
2024-12-07 12:52:35,531 Sleeping for 9s. Reason: RUNNING
2024-12-07 12:52:44,798 Sleeping for 9s. Reason: RUNNING
2024-12-07 12:52:54,057 Sleeping for 8s. Reason: RUNNING
2024-12-07 12:53:02,313 Sleeping for 5s. Reason: RUNNING
2024-12-07 12:53:07,570 Sleeping for 6s. Reason: RUNNING
2024-12-07 12:53:13,826 Sleeping for 5s. Reason: RUNNING
2024-12-07 12:53:19,076 Sleeping for 9s. Reason: RUNNING
2024-12-07 12:53:32,051 Setting max_seq=508, max_extra_seq=2048
2024-12-07 12:55:59,885 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=32.3 pTM=0.21 ipTM=0.153
2024-12-07 12:56:36,180 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=31.9 pTM=0.21 ipTM=0.168 tol=19.7
2024-12-07 12:57:12,575 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=30.8 pTM=0.211 ipTM=0.167 tol=15.3
2024-12-07 12:57:49,049 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=31.1 pTM=0.209 ipTM=0.166 tol=9.28
2024-12-07 12:58:25,542 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=31.1 pTM=0.21 ipTM=0.165 tol=6.85
2024-12-07 12:59:02,048 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=31.4 pTM=0.212 ipTM=0.165 tol=5.29
2024-12-07 12:59:38,574 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=31.5 pTM=0.212 ipTM=0.165 tol=4.65
2024-12-07 13:00:15,120 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=31.4 pTM=0.211 ipTM=0.164 tol=4.18
2024-12-07 13:00:51,659 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=31.2 pTM=0.212 ipTM=0.165 tol=5.08
2024-12-07 13:01:28,197 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=31.6 pTM=0.214 ipTM=0.168 tol=6.37
2024-12-07 13:02:04,740 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=31.5 pTM=0.213 ipTM=0.166 tol=4.71
2024-12-07 13:02:41,308 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=31.7 pTM=0.213 ipTM=0.165 tol=3.03
2024-12-07 13:03:17,861 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=31.8 pTM=0.213 ipTM=0.165 tol=2.78
2024-12-07 13:03:54,416 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=31.7 pTM=0.213 ipTM=0.166 tol=2.58
2024-12-07 13:04:30,965 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=31.7 pTM=0.213 ipTM=0.167 tol=3.56
2024-12-07 13:05:07,557 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=31.5 pTM=0.213 ipTM=0.164 tol=3.96
2024-12-07 13:05:44,137 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=31.5 pTM=0.213 ipTM=0.164 tol=5.71
2024-12-07 13:06:20,728 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=31.5 pTM=0.212 ipTM=0.164 tol=5.8
2024-12-07 13:06:57,299 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=31.5 pTM=0.211 ipTM=0.164 tol=2.84
2024-12-07 13:07:33,904 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=31.5 pTM=0.211 ipTM=0.163 tol=3.61
2024-12-07 13:08:10,480 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=31.4 pTM=0.213 ipTM=0.166 tol=4.27
2024-12-07 13:08:47,071 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=31.5 pTM=0.213 ipTM=0.166 tol=4.62
2024-12-07 13:09:23,668 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=31.7 pTM=0.212 ipTM=0.164 tol=2.57
2024-12-07 13:10:00,261 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=31.7 pTM=0.213 ipTM=0.164 tol=2.95
2024-12-07 13:10:36,861 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=31.7 pTM=0.213 ipTM=0.165 tol=2.43
2024-12-07 13:11:13,462 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=31.7 pTM=0.213 ipTM=0.165 tol=2.82
2024-12-07 13:11:50,021 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=31.6 pTM=0.214 ipTM=0.164 tol=3.08
2024-12-07 13:12:26,594 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=31.7 pTM=0.213 ipTM=0.165 tol=3.19
2024-12-07 13:13:03,156 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=31.8 pTM=0.213 ipTM=0.164 tol=2.26
2024-12-07 13:13:39,732 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=31.7 pTM=0.214 ipTM=0.164 tol=2.63
2024-12-07 13:14:16,301 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=31.8 pTM=0.214 ipTM=0.164 tol=2.53
2024-12-07 13:14:16,302 alphafold2_multimer_v3_model_1_seed_000 took 1239.3s (30 recycles)
2024-12-07 13:14:53,628 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=32.5 pTM=0.216 ipTM=0.154
2024-12-07 13:15:30,089 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=33.1 pTM=0.212 ipTM=0.161 tol=18.8
2024-12-07 13:16:06,630 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=32.8 pTM=0.213 ipTM=0.162 tol=10.4
2024-12-07 13:16:43,179 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=33 pTM=0.214 ipTM=0.164 tol=7.25
2024-12-07 13:17:19,744 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=33.1 pTM=0.214 ipTM=0.162 tol=9.73
2024-12-07 13:17:56,283 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=33.2 pTM=0.213 ipTM=0.162 tol=7.99
2024-12-07 13:18:32,845 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=33 pTM=0.214 ipTM=0.16 tol=7.63
2024-12-07 13:19:09,380 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=32.5 pTM=0.212 ipTM=0.161 tol=9.25
2024-12-07 13:19:45,918 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=32.7 pTM=0.212 ipTM=0.159 tol=11.5
2024-12-07 13:20:22,412 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=32.7 pTM=0.212 ipTM=0.159 tol=8.16
2024-12-07 13:20:58,919 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=32.8 pTM=0.212 ipTM=0.161 tol=7.66
2024-12-07 13:21:35,434 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=32.4 pTM=0.211 ipTM=0.162 tol=6.17
2024-12-07 13:22:11,943 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=32.7 pTM=0.212 ipTM=0.165 tol=9.02
2024-12-07 13:22:48,467 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=32.4 pTM=0.211 ipTM=0.165 tol=10
2024-12-07 13:23:24,977 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=32.3 pTM=0.21 ipTM=0.164 tol=8.54
2024-12-07 13:24:01,487 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=32.4 pTM=0.211 ipTM=0.166 tol=10
2024-12-07 13:24:37,973 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=32.4 pTM=0.212 ipTM=0.162 tol=8.34
2024-12-07 13:25:14,465 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=32.9 pTM=0.214 ipTM=0.162 tol=7.05
2024-12-07 13:25:50,954 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=33 pTM=0.214 ipTM=0.161 tol=6.47
2024-12-07 13:26:27,488 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=33 pTM=0.213 ipTM=0.162 tol=5.3
2024-12-07 13:27:03,998 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=32.9 pTM=0.214 ipTM=0.162 tol=5.61
2024-12-07 13:27:40,510 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=33.2 pTM=0.214 ipTM=0.161 tol=5.34
2024-12-07 13:28:17,015 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=33.2 pTM=0.212 ipTM=0.161 tol=4.95
2024-12-07 13:28:53,529 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=32.9 pTM=0.214 ipTM=0.161 tol=6.89
2024-12-07 13:29:30,044 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=33 pTM=0.212 ipTM=0.164 tol=5.63
2024-12-07 13:30:06,563 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=33 pTM=0.213 ipTM=0.161 tol=4.32
2024-12-07 13:30:43,070 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=33 pTM=0.214 ipTM=0.161 tol=3.99
2024-12-07 13:31:19,580 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=33 pTM=0.214 ipTM=0.161 tol=3.54
2024-12-07 13:31:56,109 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=33.2 pTM=0.214 ipTM=0.161 tol=4.73
2024-12-07 13:32:32,670 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=32.9 pTM=0.214 ipTM=0.161 tol=4.16
2024-12-07 13:33:09,237 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=33.2 pTM=0.214 ipTM=0.159 tol=6.04
2024-12-07 13:33:09,238 alphafold2_multimer_v3_model_2_seed_000 took 1132.0s (30 recycles)
2024-12-07 13:33:47,076 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=31.2 pTM=0.209 ipTM=0.146
2024-12-07 13:34:24,005 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=31.7 pTM=0.21 ipTM=0.149 tol=22.4
2024-12-07 13:35:00,931 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=32 pTM=0.214 ipTM=0.151 tol=13.4
2024-12-07 13:35:37,852 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=31.8 pTM=0.215 ipTM=0.153 tol=11.1
2024-12-07 13:36:14,786 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=32.2 pTM=0.215 ipTM=0.157 tol=9.5
2024-12-07 13:36:51,713 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=32.2 pTM=0.216 ipTM=0.163 tol=10.4
2024-12-07 13:37:28,618 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=32.2 pTM=0.216 ipTM=0.166 tol=10.2
2024-12-07 13:38:05,522 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=32.1 pTM=0.216 ipTM=0.166 tol=5.59
2024-12-07 13:38:42,428 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=32.1 pTM=0.215 ipTM=0.166 tol=6.34
2024-12-07 13:39:19,307 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=32 pTM=0.216 ipTM=0.167 tol=5.56
2024-12-07 13:39:56,180 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=32.1 pTM=0.216 ipTM=0.167 tol=5.73
2024-12-07 13:40:33,056 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=32 pTM=0.215 ipTM=0.167 tol=5.78
2024-12-07 13:41:09,948 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=30.8 pTM=0.216 ipTM=0.168 tol=23.1
2024-12-07 13:41:46,871 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=30.9 pTM=0.214 ipTM=0.162 tol=16.6
2024-12-07 13:42:23,762 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=31.5 pTM=0.215 ipTM=0.164 tol=13
2024-12-07 13:43:00,641 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=31.4 pTM=0.215 ipTM=0.167 tol=10.1
2024-12-07 13:43:37,526 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=31.5 pTM=0.217 ipTM=0.165 tol=8.27
2024-12-07 13:44:14,423 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=31.4 pTM=0.216 ipTM=0.164 tol=9.48
2024-12-07 13:44:51,309 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=31.5 pTM=0.217 ipTM=0.167 tol=6.07
2024-12-07 13:45:28,193 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=31.6 pTM=0.216 ipTM=0.164 tol=4.18
2024-12-07 13:46:05,029 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=31.7 pTM=0.217 ipTM=0.166 tol=3.83
2024-12-07 13:46:41,872 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=31.6 pTM=0.216 ipTM=0.162 tol=3.63
2024-12-07 13:47:18,700 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=32 pTM=0.217 ipTM=0.162 tol=3.17
2024-12-07 13:47:55,542 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=31.6 pTM=0.217 ipTM=0.161 tol=3.53
2024-12-07 13:48:32,374 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=32.2 pTM=0.217 ipTM=0.162 tol=3.25
2024-12-07 13:49:09,220 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=31.8 pTM=0.217 ipTM=0.162 tol=2.94
2024-12-07 13:49:46,057 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=32.1 pTM=0.218 ipTM=0.162 tol=2.8
2024-12-07 13:50:22,899 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=32.3 pTM=0.219 ipTM=0.161 tol=8.48
2024-12-07 13:50:59,723 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=32.3 pTM=0.218 ipTM=0.162 tol=9.28
2024-12-07 13:51:36,556 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=32.3 pTM=0.218 ipTM=0.16 tol=3.08
2024-12-07 13:52:13,392 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=32.2 pTM=0.219 ipTM=0.164 tol=3.28
2024-12-07 13:52:13,393 alphafold2_multimer_v3_model_3_seed_000 took 1143.2s (30 recycles)
2024-12-07 13:52:51,256 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=31.5 pTM=0.198 ipTM=0.142
2024-12-07 13:53:28,201 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=31.3 pTM=0.202 ipTM=0.152 tol=17.7
2024-12-07 13:54:05,121 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=31.1 pTM=0.206 ipTM=0.153 tol=15.7
2024-12-07 13:54:42,046 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=31.3 pTM=0.207 ipTM=0.153 tol=11.1
2024-12-07 13:55:18,951 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=31.6 pTM=0.208 ipTM=0.152 tol=12.5
2024-12-07 13:55:55,862 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=31.5 pTM=0.21 ipTM=0.155 tol=14.8
2024-12-07 13:56:32,782 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=31.5 pTM=0.211 ipTM=0.156 tol=10.4
2024-12-07 13:57:09,704 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=31.5 pTM=0.21 ipTM=0.157 tol=7.19
2024-12-07 13:57:46,634 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=31.5 pTM=0.21 ipTM=0.156 tol=5.82
2024-12-07 13:58:23,608 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=31.7 pTM=0.21 ipTM=0.157 tol=10.5
2024-12-07 13:59:00,572 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=31.5 pTM=0.21 ipTM=0.157 tol=10.7
2024-12-07 13:59:37,522 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=31.6 pTM=0.213 ipTM=0.158 tol=5.18
2024-12-07 14:00:14,484 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=31.8 pTM=0.212 ipTM=0.158 tol=4.97
2024-12-07 14:00:51,419 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=31.4 pTM=0.21 ipTM=0.166 tol=5.96
2024-12-07 14:01:28,382 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=31.7 pTM=0.21 ipTM=0.161 tol=3.82
2024-12-07 14:02:05,314 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=31.2 pTM=0.209 ipTM=0.172 tol=12.7
2024-12-07 14:02:42,222 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=31 pTM=0.21 ipTM=0.163 tol=12.7
2024-12-07 14:03:19,114 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=31.4 pTM=0.211 ipTM=0.164 tol=9.77
2024-12-07 14:03:55,998 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=31.2 pTM=0.213 ipTM=0.164 tol=5.8
2024-12-07 14:04:32,886 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=31.4 pTM=0.214 ipTM=0.164 tol=7.03
2024-12-07 14:05:09,754 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=31.5 pTM=0.212 ipTM=0.162 tol=6.04
2024-12-07 14:05:46,647 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=31.8 pTM=0.211 ipTM=0.16 tol=5.36
2024-12-07 14:06:23,542 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=31.8 pTM=0.213 ipTM=0.161 tol=6.5
2024-12-07 14:07:00,439 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=31.8 pTM=0.214 ipTM=0.162 tol=5.6
2024-12-07 14:07:37,327 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=31.6 pTM=0.214 ipTM=0.165 tol=5.28
2024-12-07 14:08:14,227 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=31.7 pTM=0.216 ipTM=0.163 tol=13.6
2024-12-07 14:08:51,122 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=31.4 pTM=0.213 ipTM=0.165 tol=12.5
2024-12-07 14:09:28,041 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=31.8 pTM=0.213 ipTM=0.161 tol=10.3
2024-12-07 14:10:04,968 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=31.6 pTM=0.213 ipTM=0.161 tol=7.09
2024-12-07 14:10:41,889 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=31.7 pTM=0.214 ipTM=0.164 tol=13.2
2024-12-07 14:11:18,859 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=31.8 pTM=0.214 ipTM=0.162 tol=11.6
2024-12-07 14:11:18,861 alphafold2_multimer_v3_model_4_seed_000 took 1144.5s (30 recycles)
2024-12-07 14:11:56,843 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=31 pTM=0.208 ipTM=0.144
2024-12-07 14:12:33,879 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=32.2 pTM=0.215 ipTM=0.151 tol=19.9
2024-12-07 14:13:10,865 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=33 pTM=0.216 ipTM=0.173 tol=19.2
2024-12-07 14:13:47,852 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=33 pTM=0.217 ipTM=0.174 tol=11
2024-12-07 14:14:24,832 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=33.5 pTM=0.217 ipTM=0.169 tol=10
2024-12-07 14:15:01,793 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=33.4 pTM=0.218 ipTM=0.171 tol=7.19
2024-12-07 14:15:38,784 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=34 pTM=0.217 ipTM=0.167 tol=15.9
2024-12-07 14:16:15,768 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=33.4 pTM=0.217 ipTM=0.171 tol=14.4
2024-12-07 14:16:52,767 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=33.3 pTM=0.216 ipTM=0.166 tol=7.84
2024-12-07 14:17:29,786 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=33 pTM=0.217 ipTM=0.164 tol=14.8
2024-12-07 14:18:06,771 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=33.3 pTM=0.217 ipTM=0.161 tol=13.1
2024-12-07 14:18:43,832 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=32.5 pTM=0.216 ipTM=0.156 tol=8.81
2024-12-07 14:19:20,865 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=32.8 pTM=0.218 ipTM=0.157 tol=13
2024-12-07 14:19:57,885 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=32.5 pTM=0.218 ipTM=0.157 tol=12.3
2024-12-07 14:20:34,901 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=32.9 pTM=0.217 ipTM=0.161 tol=5.53
2024-12-07 14:21:11,897 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=32.4 pTM=0.217 ipTM=0.158 tol=12.3
2024-12-07 14:21:48,950 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=32.7 pTM=0.217 ipTM=0.156 tol=8.33
2024-12-07 14:22:25,947 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=32.7 pTM=0.217 ipTM=0.157 tol=12
2024-12-07 14:23:02,943 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=32.5 pTM=0.217 ipTM=0.158 tol=13.6
2024-12-07 14:23:39,970 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=32.2 pTM=0.216 ipTM=0.156 tol=10.8
2024-12-07 14:24:16,968 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=32.2 pTM=0.218 ipTM=0.157 tol=5.64
2024-12-07 14:24:53,994 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=32.2 pTM=0.217 ipTM=0.156 tol=11.8
2024-12-07 14:25:31,042 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=32.5 pTM=0.217 ipTM=0.155 tol=12.3
2024-12-07 14:26:08,116 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=31.9 pTM=0.219 ipTM=0.159 tol=6.94
2024-12-07 14:26:45,171 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=32.6 pTM=0.218 ipTM=0.157 tol=6.89
2024-12-07 14:27:22,202 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=32 pTM=0.217 ipTM=0.156 tol=13.7
2024-12-07 14:27:59,287 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=32.2 pTM=0.219 ipTM=0.158 tol=12.6
2024-12-07 14:28:36,310 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=32.1 pTM=0.22 ipTM=0.162 tol=11.6
2024-12-07 14:29:13,334 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=32.4 pTM=0.225 ipTM=0.173 tol=6.79
2024-12-07 14:29:50,310 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=32.8 pTM=0.234 ipTM=0.197 tol=6.76
2024-12-07 14:30:27,292 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=33 pTM=0.24 ipTM=0.21 tol=7.02
2024-12-07 14:30:27,293 alphafold2_multimer_v3_model_5_seed_000 took 1147.5s (30 recycles)
2024-12-07 14:30:28,225 reranking models by 'multimer' metric
2024-12-07 14:30:29,428 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 14:32:13,989 Relaxation took 105.8s
2024-12-07 14:32:13,989 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=33 pTM=0.24 ipTM=0.21
2024-12-07 14:34:18,256 Relaxation took 124.3s
2024-12-07 14:34:18,256 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=32.2 pTM=0.219 ipTM=0.164
2024-12-07 14:36:16,798 Relaxation took 118.5s
2024-12-07 14:36:16,798 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=31.8 pTM=0.214 ipTM=0.164
2024-12-07 14:38:03,788 Relaxation took 107.0s
2024-12-07 14:38:03,788 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=31.8 pTM=0.214 ipTM=0.162
2024-12-07 14:39:48,691 Relaxation took 104.9s
2024-12-07 14:39:48,691 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=33.2 pTM=0.214 ipTM=0.159
2024-12-07 14:39:51,064 Done