2024-12-07 13:03:01,560 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 13:03:03,111 Running on GPU
2024-12-07 13:03:07,416 Found 6 citations for tools or databases
2024-12-07 13:03:07,416 Query 1/1: PJA1_USP7 (length 1745)
2024-12-07 13:03:07,704 Sleeping for 6s. Reason: PENDING
2024-12-07 13:03:13,962 Sleeping for 8s. Reason: PENDING
2024-12-07 13:03:22,580 Sleeping for 10s. Reason: PENDING
2024-12-07 13:03:32,842 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:03:40,108 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:03:47,374 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:03:55,634 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:04:00,894 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:04:08,151 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:04:18,416 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:04:25,677 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:04:32,941 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:04:39,198 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:04:47,460 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:04:53,715 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:05:02,966 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:05:08,229 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:05:13,490 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:05:18,748 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:05:28,015 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:05:36,274 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:05:46,540 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:05:56,802 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:06:07,062 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:06:12,316 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:06:21,578 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:06:31,003 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:06:40,268 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:06:48,538 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:06:58,802 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:07:04,057 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:07:12,318 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:07:20,579 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:07:28,845 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:07:34,109 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:07:42,743 Sleeping for 8s. Reason: PENDING
2024-12-07 13:07:51,003 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:07:56,260 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:08:01,516 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:08:10,779 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:08:21,040 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:08:27,308 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:08:36,569 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:08:44,823 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:08:55,082 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:09:04,348 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:09:09,613 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:09:19,885 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:09:25,153 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:09:30,406 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:09:37,666 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:09:42,931 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:09:52,200 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:10:00,466 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:10:19,313 Setting max_seq=508, max_extra_seq=2048
2024-12-07 13:16:16,078 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58.2 pTM=0.413 ipTM=0.192
2024-12-07 13:17:49,465 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=58 pTM=0.41 ipTM=0.201 tol=12.1
2024-12-07 13:19:22,792 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=58.1 pTM=0.402 ipTM=0.2 tol=7.28
2024-12-07 13:20:56,136 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=58.3 pTM=0.406 ipTM=0.202 tol=6.03
2024-12-07 13:22:29,434 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=58.5 pTM=0.411 ipTM=0.221 tol=4.39
2024-12-07 13:24:02,684 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.4 pTM=0.41 ipTM=0.213 tol=6.7
2024-12-07 13:25:35,892 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=58.7 pTM=0.412 ipTM=0.199 tol=4.32
2024-12-07 13:27:09,039 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=58.8 pTM=0.415 ipTM=0.23 tol=6.25
2024-12-07 13:28:42,156 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=58.8 pTM=0.417 ipTM=0.198 tol=6.53
2024-12-07 13:30:15,277 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=58.7 pTM=0.416 ipTM=0.198 tol=4.21
2024-12-07 13:31:48,334 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=58.6 pTM=0.416 ipTM=0.201 tol=3.79
2024-12-07 13:33:21,395 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=58.8 pTM=0.415 ipTM=0.241 tol=2.46
2024-12-07 13:34:54,453 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58.7 pTM=0.419 ipTM=0.212 tol=5.36
2024-12-07 13:36:27,542 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=58.8 pTM=0.416 ipTM=0.199 tol=3.22
2024-12-07 13:38:00,628 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.9 pTM=0.415 ipTM=0.2 tol=4.23
2024-12-07 13:39:33,674 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.9 pTM=0.418 ipTM=0.199 tol=3.13
2024-12-07 13:41:06,703 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=58.6 pTM=0.411 ipTM=0.21 tol=2.84
2024-12-07 13:42:39,724 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=58.8 pTM=0.413 ipTM=0.209 tol=1.96
2024-12-07 13:44:12,765 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.8 pTM=0.414 ipTM=0.218 tol=4.35
2024-12-07 13:45:45,789 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=58.9 pTM=0.415 ipTM=0.215 tol=4.04
2024-12-07 13:47:18,835 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=58.9 pTM=0.417 ipTM=0.225 tol=4.03
2024-12-07 13:48:51,877 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=58.8 pTM=0.413 ipTM=0.221 tol=4.73
2024-12-07 13:50:24,906 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.8 pTM=0.417 ipTM=0.23 tol=2.92
2024-12-07 13:51:57,934 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.9 pTM=0.417 ipTM=0.229 tol=5.38
2024-12-07 13:53:30,954 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58.7 pTM=0.415 ipTM=0.233 tol=4.33
2024-12-07 13:55:03,977 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.8 pTM=0.414 ipTM=0.229 tol=4.08
2024-12-07 13:56:37,019 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=58.5 pTM=0.411 ipTM=0.221 tol=4.18
2024-12-07 13:58:10,078 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58.7 pTM=0.412 ipTM=0.216 tol=4.61
2024-12-07 13:59:43,156 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=58.6 pTM=0.41 ipTM=0.221 tol=3.26
2024-12-07 14:01:16,250 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=58.8 pTM=0.412 ipTM=0.216 tol=2.5
2024-12-07 14:02:49,298 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.7 pTM=0.41 ipTM=0.221 tol=2.82
2024-12-07 14:02:49,300 alphafold2_multimer_v3_model_1_seed_000 took 3128.8s (30 recycles)
2024-12-07 14:04:24,935 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=58.8 pTM=0.455 ipTM=0.206
2024-12-07 14:05:57,974 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.6 pTM=0.487 ipTM=0.409 tol=12.5
2024-12-07 14:07:31,046 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=59.9 pTM=0.469 ipTM=0.258 tol=6.75
2024-12-07 14:09:04,128 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=59.9 pTM=0.464 ipTM=0.214 tol=5.18
2024-12-07 14:10:37,217 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60 pTM=0.461 ipTM=0.199 tol=3.66
2024-12-07 14:12:10,302 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60 pTM=0.462 ipTM=0.196 tol=3.51
2024-12-07 14:13:43,447 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.2 pTM=0.46 ipTM=0.196 tol=4.01
2024-12-07 14:15:16,579 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.4 pTM=0.466 ipTM=0.197 tol=4.46
2024-12-07 14:16:49,694 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=60.4 pTM=0.468 ipTM=0.199 tol=4.03
2024-12-07 14:18:22,777 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.3 pTM=0.468 ipTM=0.2 tol=5.59
2024-12-07 14:19:55,832 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.2 pTM=0.466 ipTM=0.203 tol=5.38
2024-12-07 14:21:28,874 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.4 pTM=0.468 ipTM=0.206 tol=5.52
2024-12-07 14:23:01,949 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.3 pTM=0.466 ipTM=0.203 tol=3.07
2024-12-07 14:24:35,026 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.3 pTM=0.467 ipTM=0.203 tol=3.58
2024-12-07 14:26:08,104 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.5 pTM=0.469 ipTM=0.205 tol=4.37
2024-12-07 14:27:41,188 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.4 pTM=0.469 ipTM=0.203 tol=3.39
2024-12-07 14:29:14,250 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.2 pTM=0.463 ipTM=0.203 tol=3.94
2024-12-07 14:30:47,320 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.3 pTM=0.466 ipTM=0.202 tol=3.99
2024-12-07 14:32:20,382 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.4 pTM=0.467 ipTM=0.205 tol=4.24
2024-12-07 14:33:53,415 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.5 pTM=0.468 ipTM=0.204 tol=4.56
2024-12-07 14:35:26,443 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=60.4 pTM=0.469 ipTM=0.205 tol=4.16
2024-12-07 14:36:59,468 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.5 pTM=0.467 ipTM=0.203 tol=3.88
2024-12-07 14:38:32,482 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.5 pTM=0.468 ipTM=0.205 tol=3.27
2024-12-07 14:40:05,491 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.7 pTM=0.471 ipTM=0.208 tol=4.37
2024-12-07 14:41:38,517 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.5 pTM=0.47 ipTM=0.21 tol=4.93
2024-12-07 14:43:11,613 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.4 pTM=0.466 ipTM=0.205 tol=3.65
2024-12-07 14:44:44,692 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.4 pTM=0.466 ipTM=0.206 tol=3.53
2024-12-07 14:46:17,740 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.4 pTM=0.467 ipTM=0.206 tol=2.91
2024-12-07 14:47:50,799 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.4 pTM=0.468 ipTM=0.207 tol=2.71
2024-12-07 14:49:23,867 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.4 pTM=0.466 ipTM=0.206 tol=2.69
2024-12-07 14:50:56,919 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.4 pTM=0.467 ipTM=0.205 tol=2.56
2024-12-07 14:50:56,921 alphafold2_multimer_v3_model_2_seed_000 took 2885.1s (30 recycles)
2024-12-07 14:52:32,849 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=58.3 pTM=0.423 ipTM=0.182
2024-12-07 14:54:06,077 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=59.8 pTM=0.452 ipTM=0.194 tol=19.7
2024-12-07 14:55:39,309 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.7 pTM=0.448 ipTM=0.194 tol=13.6
2024-12-07 14:57:12,539 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60 pTM=0.456 ipTM=0.207 tol=7.55
2024-12-07 14:58:45,743 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=60.4 pTM=0.462 ipTM=0.223 tol=8.81
2024-12-07 15:00:18,925 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.5 pTM=0.465 ipTM=0.201 tol=6.41
2024-12-07 15:01:52,107 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.7 pTM=0.468 ipTM=0.201 tol=4.59
2024-12-07 15:03:25,303 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.7 pTM=0.471 ipTM=0.203 tol=3.14
2024-12-07 15:04:58,509 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.8 pTM=0.475 ipTM=0.203 tol=2.47
2024-12-07 15:06:31,744 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=60.8 pTM=0.48 ipTM=0.262 tol=3.05
2024-12-07 15:08:04,951 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.9 pTM=0.48 ipTM=0.25 tol=2.61
2024-12-07 15:09:38,146 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60.9 pTM=0.476 ipTM=0.219 tol=2.37
2024-12-07 15:11:11,303 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.7 pTM=0.475 ipTM=0.202 tol=6.41
2024-12-07 15:12:44,455 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.8 pTM=0.476 ipTM=0.214 tol=3.39
2024-12-07 15:14:17,636 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61 pTM=0.483 ipTM=0.225 tol=5.66
2024-12-07 15:15:50,812 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61 pTM=0.479 ipTM=0.22 tol=5.32
2024-12-07 15:17:23,956 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.8 pTM=0.475 ipTM=0.227 tol=6.59
2024-12-07 15:18:57,124 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.8 pTM=0.473 ipTM=0.223 tol=3.55
2024-12-07 15:20:30,335 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.8 pTM=0.474 ipTM=0.221 tol=5.27
2024-12-07 15:22:03,555 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=60.8 pTM=0.475 ipTM=0.226 tol=5.13
2024-12-07 15:23:36,766 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=60.7 pTM=0.477 ipTM=0.217 tol=3.09
2024-12-07 15:25:09,962 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=60.7 pTM=0.473 ipTM=0.217 tol=2.77
2024-12-07 15:26:43,166 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=60.9 pTM=0.481 ipTM=0.227 tol=2.64
2024-12-07 15:28:16,349 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=60.9 pTM=0.479 ipTM=0.233 tol=5.13
2024-12-07 15:29:49,491 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=60.8 pTM=0.477 ipTM=0.218 tol=4.51
2024-12-07 15:31:22,637 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=60.8 pTM=0.474 ipTM=0.208 tol=5.09
2024-12-07 15:32:55,731 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=60.7 pTM=0.476 ipTM=0.222 tol=2.56
2024-12-07 15:34:28,814 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.8 pTM=0.475 ipTM=0.219 tol=4.99
2024-12-07 15:36:01,939 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=60.9 pTM=0.476 ipTM=0.228 tol=3.09
2024-12-07 15:37:35,055 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=60.9 pTM=0.477 ipTM=0.236 tol=2.45
2024-12-07 15:39:08,208 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=60.9 pTM=0.475 ipTM=0.229 tol=2.01
2024-12-07 15:39:08,210 alphafold2_multimer_v3_model_3_seed_000 took 2888.7s (30 recycles)
2024-12-07 15:40:44,394 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.4 pTM=0.416 ipTM=0.186
2024-12-07 15:42:18,024 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=58.2 pTM=0.439 ipTM=0.192 tol=16.6
2024-12-07 15:43:51,524 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58.4 pTM=0.432 ipTM=0.2 tol=13
2024-12-07 15:45:25,051 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=58.4 pTM=0.432 ipTM=0.199 tol=11.5
2024-12-07 15:46:58,561 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=58.5 pTM=0.434 ipTM=0.263 tol=7.93
2024-12-07 15:48:32,036 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=58.7 pTM=0.435 ipTM=0.257 tol=7.5
2024-12-07 15:50:05,511 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=58.6 pTM=0.432 ipTM=0.277 tol=8.6
2024-12-07 15:51:38,933 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=58.6 pTM=0.434 ipTM=0.248 tol=7.81
2024-12-07 15:53:12,338 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=58.6 pTM=0.436 ipTM=0.255 tol=6.34
2024-12-07 15:54:45,744 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=58.4 pTM=0.431 ipTM=0.241 tol=3.76
2024-12-07 15:56:19,213 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=58.4 pTM=0.43 ipTM=0.206 tol=2.71
2024-12-07 15:57:52,623 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=58.4 pTM=0.429 ipTM=0.269 tol=2.51
2024-12-07 15:59:26,034 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=58.4 pTM=0.43 ipTM=0.257 tol=2.49
2024-12-07 16:00:59,427 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=58.4 pTM=0.431 ipTM=0.236 tol=3.05
2024-12-07 16:02:32,837 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=58.5 pTM=0.431 ipTM=0.229 tol=4.38
2024-12-07 16:04:06,232 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=58.4 pTM=0.429 ipTM=0.2 tol=3.21
2024-12-07 16:05:39,604 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=58.3 pTM=0.428 ipTM=0.206 tol=6.59
2024-12-07 16:07:12,944 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=58.3 pTM=0.426 ipTM=0.251 tol=6.82
2024-12-07 16:08:46,296 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=58.3 pTM=0.428 ipTM=0.252 tol=6.79
2024-12-07 16:10:19,632 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=58.4 pTM=0.428 ipTM=0.248 tol=5
2024-12-07 16:11:52,986 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=58.5 pTM=0.434 ipTM=0.284 tol=4.23
2024-12-07 16:13:26,327 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=58.4 pTM=0.43 ipTM=0.247 tol=4.09
2024-12-07 16:14:59,702 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=58.7 pTM=0.434 ipTM=0.203 tol=7.36
2024-12-07 16:16:33,080 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=58.4 pTM=0.43 ipTM=0.201 tol=7.28
2024-12-07 16:18:06,387 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=58.4 pTM=0.429 ipTM=0.261 tol=7.07
2024-12-07 16:19:39,716 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=58.5 pTM=0.43 ipTM=0.236 tol=6.47
2024-12-07 16:21:13,059 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=58.5 pTM=0.43 ipTM=0.2 tol=6.03
2024-12-07 16:22:46,380 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=58.5 pTM=0.433 ipTM=0.299 tol=3.28
2024-12-07 16:24:19,719 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=58.6 pTM=0.435 ipTM=0.263 tol=8.34
2024-12-07 16:25:53,064 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=58.5 pTM=0.435 ipTM=0.285 tol=5.71
2024-12-07 16:27:26,406 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=58.4 pTM=0.434 ipTM=0.25 tol=6.83
2024-12-07 16:27:26,408 alphafold2_multimer_v3_model_4_seed_000 took 2895.6s (30 recycles)
2024-12-07 16:29:02,238 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=57.9 pTM=0.416 ipTM=0.185
2024-12-07 16:30:35,410 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=58.8 pTM=0.427 ipTM=0.195 tol=11.1
2024-12-07 16:32:08,615 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.5 pTM=0.42 ipTM=0.207 tol=13.2
2024-12-07 16:33:41,861 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=58.9 pTM=0.421 ipTM=0.227 tol=7.91
2024-12-07 16:35:15,138 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=59.2 pTM=0.426 ipTM=0.254 tol=6.45
2024-12-07 16:36:48,415 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=59.1 pTM=0.427 ipTM=0.214 tol=7.77
2024-12-07 16:38:21,756 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=59.4 pTM=0.429 ipTM=0.2 tol=6.46
2024-12-07 16:39:55,086 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=59.4 pTM=0.435 ipTM=0.2 tol=4.48
2024-12-07 16:41:28,416 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=59.6 pTM=0.437 ipTM=0.208 tol=6.72
2024-12-07 16:43:01,698 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=59.5 pTM=0.44 ipTM=0.204 tol=5.93
2024-12-07 16:44:34,981 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=59.5 pTM=0.438 ipTM=0.201 tol=5.57
2024-12-07 16:46:08,267 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=59.6 pTM=0.438 ipTM=0.194 tol=5.97
2024-12-07 16:47:41,509 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=59.4 pTM=0.438 ipTM=0.257 tol=8.38
2024-12-07 16:49:14,781 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=59.5 pTM=0.44 ipTM=0.196 tol=5.86
2024-12-07 16:50:48,038 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=59.7 pTM=0.441 ipTM=0.194 tol=8.77
2024-12-07 16:52:21,330 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=59.7 pTM=0.442 ipTM=0.193 tol=4.43
2024-12-07 16:53:54,594 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=59.5 pTM=0.439 ipTM=0.193 tol=10.3
2024-12-07 16:55:27,816 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=59.5 pTM=0.44 ipTM=0.254 tol=7.41
2024-12-07 16:57:01,069 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=59.6 pTM=0.442 ipTM=0.2 tol=7.43
2024-12-07 16:58:34,317 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=59.7 pTM=0.446 ipTM=0.194 tol=3.25
2024-12-07 17:00:07,570 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=59.7 pTM=0.447 ipTM=0.196 tol=2.67
2024-12-07 17:01:40,818 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=59.7 pTM=0.446 ipTM=0.195 tol=2.27
2024-12-07 17:03:14,060 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=59.8 pTM=0.447 ipTM=0.271 tol=6.6
2024-12-07 17:04:47,307 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=59.9 pTM=0.448 ipTM=0.223 tol=3.63
2024-12-07 17:06:20,538 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=59.8 pTM=0.445 ipTM=0.198 tol=2.28
2024-12-07 17:07:53,796 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=59.8 pTM=0.444 ipTM=0.195 tol=7.84
2024-12-07 17:09:26,995 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=59.7 pTM=0.446 ipTM=0.236 tol=6.9
2024-12-07 17:11:00,209 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=59.7 pTM=0.445 ipTM=0.203 tol=3.45
2024-12-07 17:12:33,460 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=59.7 pTM=0.446 ipTM=0.195 tol=6.01
2024-12-07 17:14:06,737 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=59.8 pTM=0.446 ipTM=0.197 tol=6.15
2024-12-07 17:15:40,019 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=59.8 pTM=0.446 ipTM=0.207 tol=4.83
2024-12-07 17:15:40,021 alphafold2_multimer_v3_model_5_seed_000 took 2891.0s (30 recycles)
2024-12-07 17:15:42,598 reranking models by 'multimer' metric
2024-12-07 17:15:46,683 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 17:21:24,127 Relaxation took 341.5s
2024-12-07 17:21:24,127 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=58.4 pTM=0.434 ipTM=0.25
2024-12-07 17:25:43,204 Relaxation took 259.1s
2024-12-07 17:25:43,204 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=60.9 pTM=0.475 ipTM=0.229
2024-12-07 17:31:46,230 Relaxation took 363.0s
2024-12-07 17:31:46,230 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.7 pTM=0.41 ipTM=0.221
2024-12-07 17:39:25,447 Relaxation took 459.2s
2024-12-07 17:39:25,447 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.4 pTM=0.467 ipTM=0.205
2024-12-07 17:44:29,053 Relaxation took 303.6s
2024-12-07 17:44:29,053 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=59.8 pTM=0.446 ipTM=0.207
2024-12-07 17:44:34,582 Done