2024-12-07 13:15:03,109 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 13:15:03,440 Running on GPU
2024-12-07 13:15:06,956 Found 6 citations for tools or databases
2024-12-07 13:15:06,957 Query 1/1: PML_TMED7 (length 1106)
2024-12-07 13:15:07,273 Sleeping for 6s. Reason: PENDING
2024-12-07 13:15:13,528 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:15:18,785 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:15:29,048 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:15:35,311 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:15:43,578 Sleeping for 7s. Reason: RUNNING
2024-12-07 13:15:50,834 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:15:57,090 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:16:05,354 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:16:10,609 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:16:18,866 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:16:27,129 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:16:33,381 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:16:38,636 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:16:44,886 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:16:53,141 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:16:58,391 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:17:07,648 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:17:18,439 Sleeping for 10s. Reason: PENDING
2024-12-07 13:17:28,697 Sleeping for 7s. Reason: PENDING
2024-12-07 13:17:35,953 Sleeping for 10s. Reason: PENDING
2024-12-07 13:17:46,219 Sleeping for 5s. Reason: RUNNING
2024-12-07 13:17:51,479 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:17:57,728 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:18:03,978 Sleeping for 9s. Reason: RUNNING
2024-12-07 13:18:13,240 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:18:23,647 Sleeping for 8s. Reason: RUNNING
2024-12-07 13:18:31,897 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:18:42,162 Sleeping for 6s. Reason: RUNNING
2024-12-07 13:18:48,412 Sleeping for 10s. Reason: RUNNING
2024-12-07 13:19:01,873 Setting max_seq=508, max_extra_seq=2048
2024-12-07 13:21:55,487 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=57.9 pTM=0.316 ipTM=0.325
2024-12-07 13:22:23,016 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.7 pTM=0.323 ipTM=0.282 tol=34.5
2024-12-07 13:22:50,682 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=61.3 pTM=0.319 ipTM=0.354 tol=7.52
2024-12-07 13:23:18,454 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=61.1 pTM=0.318 ipTM=0.246 tol=3.74
2024-12-07 13:23:46,276 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.8 pTM=0.318 ipTM=0.243 tol=3.16
2024-12-07 13:24:14,137 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61.2 pTM=0.318 ipTM=0.269 tol=3.81
2024-12-07 13:24:42,020 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=60.7 pTM=0.317 ipTM=0.253 tol=5.95
2024-12-07 13:25:09,920 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61 pTM=0.319 ipTM=0.254 tol=4.11
2024-12-07 13:25:37,837 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=60.7 pTM=0.319 ipTM=0.271 tol=2.14
2024-12-07 13:26:05,743 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.8 pTM=0.318 ipTM=0.261 tol=2.23
2024-12-07 13:26:33,649 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=60.9 pTM=0.321 ipTM=0.27 tol=2.89
2024-12-07 13:27:01,535 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=60.9 pTM=0.319 ipTM=0.264 tol=4.1
2024-12-07 13:27:29,419 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=60.7 pTM=0.321 ipTM=0.254 tol=4.25
2024-12-07 13:27:57,293 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=60.7 pTM=0.322 ipTM=0.24 tol=1.34
2024-12-07 13:28:25,165 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=60.7 pTM=0.321 ipTM=0.264 tol=1.74
2024-12-07 13:28:53,037 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=60.7 pTM=0.323 ipTM=0.247 tol=1.55
2024-12-07 13:29:20,902 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60.8 pTM=0.322 ipTM=0.256 tol=1.48
2024-12-07 13:29:48,785 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=61 pTM=0.323 ipTM=0.278 tol=3.63
2024-12-07 13:30:16,671 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=60.6 pTM=0.32 ipTM=0.256 tol=3.45
2024-12-07 13:30:44,541 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=60.5 pTM=0.319 ipTM=0.264 tol=1.42
2024-12-07 13:31:12,403 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=60.7 pTM=0.324 ipTM=0.257 tol=1.41
2024-12-07 13:31:40,271 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=60.9 pTM=0.324 ipTM=0.269 tol=0.935
2024-12-07 13:32:08,151 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=60.7 pTM=0.321 ipTM=0.251 tol=0.944
2024-12-07 13:32:36,034 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=60.7 pTM=0.322 ipTM=0.249 tol=1.26
2024-12-07 13:33:03,916 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.5 pTM=0.323 ipTM=0.241 tol=1.72
2024-12-07 13:33:31,799 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=60.6 pTM=0.322 ipTM=0.258 tol=1.45
2024-12-07 13:33:59,680 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.6 pTM=0.323 ipTM=0.256 tol=1.07
2024-12-07 13:34:27,567 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=60.8 pTM=0.324 ipTM=0.263 tol=1.22
2024-12-07 13:34:55,442 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=60.6 pTM=0.321 ipTM=0.269 tol=1.52
2024-12-07 13:35:23,332 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=60.6 pTM=0.324 ipTM=0.247 tol=1.36
2024-12-07 13:35:51,194 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=60.5 pTM=0.323 ipTM=0.262 tol=1.6
2024-12-07 13:35:51,195 alphafold2_multimer_v3_model_1_seed_000 took 1004.2s (30 recycles)
2024-12-07 13:36:19,956 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=57.5 pTM=0.31 ipTM=0.138
2024-12-07 13:36:47,845 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60 pTM=0.329 ipTM=0.205 tol=41.3
2024-12-07 13:37:15,732 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=60.6 pTM=0.323 ipTM=0.254 tol=8.26
2024-12-07 13:37:43,626 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=61.5 pTM=0.323 ipTM=0.239 tol=6.58
2024-12-07 13:38:11,537 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=61.2 pTM=0.323 ipTM=0.233 tol=2.71
2024-12-07 13:38:39,437 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62 pTM=0.324 ipTM=0.239 tol=3.03
2024-12-07 13:39:07,334 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=61.2 pTM=0.323 ipTM=0.23 tol=3.54
2024-12-07 13:39:35,194 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=62.1 pTM=0.324 ipTM=0.225 tol=3.17
2024-12-07 13:40:03,057 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=61.5 pTM=0.324 ipTM=0.228 tol=2.97
2024-12-07 13:40:30,908 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=61.9 pTM=0.324 ipTM=0.228 tol=3.22
2024-12-07 13:40:58,772 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=61.8 pTM=0.324 ipTM=0.235 tol=1.93
2024-12-07 13:41:26,639 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=62.1 pTM=0.323 ipTM=0.239 tol=2.24
2024-12-07 13:41:54,495 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=61.8 pTM=0.323 ipTM=0.23 tol=4.02
2024-12-07 13:42:22,332 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=62.2 pTM=0.323 ipTM=0.232 tol=2.96
2024-12-07 13:42:50,198 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=61.8 pTM=0.323 ipTM=0.252 tol=2.25
2024-12-07 13:43:18,085 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=62.2 pTM=0.323 ipTM=0.24 tol=2.35
2024-12-07 13:43:45,997 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=62 pTM=0.323 ipTM=0.23 tol=3.26
2024-12-07 13:44:13,923 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=62.2 pTM=0.323 ipTM=0.245 tol=2.87
2024-12-07 13:44:41,848 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=61.9 pTM=0.324 ipTM=0.238 tol=2.79
2024-12-07 13:45:09,779 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=62 pTM=0.324 ipTM=0.249 tol=2.96
2024-12-07 13:45:37,725 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61.9 pTM=0.324 ipTM=0.244 tol=3.2
2024-12-07 13:46:05,653 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=62 pTM=0.323 ipTM=0.25 tol=2.75
2024-12-07 13:46:33,562 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=61.8 pTM=0.323 ipTM=0.23 tol=3.39
2024-12-07 13:47:01,461 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=62.2 pTM=0.324 ipTM=0.238 tol=3.02
2024-12-07 13:47:29,355 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=61.6 pTM=0.324 ipTM=0.219 tol=3.24
2024-12-07 13:47:57,254 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=62.1 pTM=0.324 ipTM=0.236 tol=2.92
2024-12-07 13:48:25,169 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61.8 pTM=0.325 ipTM=0.233 tol=2.72
2024-12-07 13:48:53,082 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=62 pTM=0.325 ipTM=0.236 tol=1.38
2024-12-07 13:49:21,002 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=61.7 pTM=0.325 ipTM=0.231 tol=1.59
2024-12-07 13:49:48,931 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=61.9 pTM=0.325 ipTM=0.229 tol=1.54
2024-12-07 13:50:16,850 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=61.6 pTM=0.324 ipTM=0.226 tol=1.33
2024-12-07 13:50:16,851 alphafold2_multimer_v3_model_2_seed_000 took 864.9s (30 recycles)
2024-12-07 13:50:45,629 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=55.6 pTM=0.319 ipTM=0.146
2024-12-07 13:51:13,598 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=59.9 pTM=0.319 ipTM=0.162 tol=29
2024-12-07 13:51:41,569 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=60.1 pTM=0.319 ipTM=0.162 tol=8.97
2024-12-07 13:52:09,554 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=59.9 pTM=0.319 ipTM=0.165 tol=6.74
2024-12-07 13:52:37,533 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=59.9 pTM=0.32 ipTM=0.17 tol=5.52
2024-12-07 13:53:05,511 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.2 pTM=0.32 ipTM=0.175 tol=3.12
2024-12-07 13:53:33,491 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.1 pTM=0.319 ipTM=0.173 tol=2.62
2024-12-07 13:54:01,465 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.3 pTM=0.32 ipTM=0.176 tol=3.67
2024-12-07 13:54:29,440 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.3 pTM=0.319 ipTM=0.176 tol=2.15
2024-12-07 13:54:57,396 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=60.4 pTM=0.32 ipTM=0.174 tol=4.44
2024-12-07 13:55:25,361 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.5 pTM=0.319 ipTM=0.17 tol=3.15
2024-12-07 13:55:53,318 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60.6 pTM=0.319 ipTM=0.167 tol=2.68
2024-12-07 13:56:21,265 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.6 pTM=0.32 ipTM=0.166 tol=2.31
2024-12-07 13:56:49,218 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.7 pTM=0.319 ipTM=0.164 tol=2.64
2024-12-07 13:57:17,161 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=60.4 pTM=0.319 ipTM=0.165 tol=2.23
2024-12-07 13:57:45,131 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=60.5 pTM=0.32 ipTM=0.166 tol=2.22
2024-12-07 13:58:13,073 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.4 pTM=0.32 ipTM=0.168 tol=1.75
2024-12-07 13:58:41,013 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.6 pTM=0.321 ipTM=0.168 tol=2.06
2024-12-07 13:59:08,945 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.2 pTM=0.321 ipTM=0.169 tol=2.91
2024-12-07 13:59:36,888 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=60 pTM=0.321 ipTM=0.171 tol=2.85
2024-12-07 14:00:04,841 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=60.1 pTM=0.322 ipTM=0.172 tol=2.62
2024-12-07 14:00:32,809 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=60 pTM=0.322 ipTM=0.171 tol=2.94
2024-12-07 14:01:00,771 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=59.8 pTM=0.321 ipTM=0.174 tol=3.88
2024-12-07 14:01:28,735 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=59.9 pTM=0.322 ipTM=0.175 tol=2.89
2024-12-07 14:01:56,692 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=59.7 pTM=0.322 ipTM=0.178 tol=3.59
2024-12-07 14:02:24,632 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=59.6 pTM=0.321 ipTM=0.177 tol=3.46
2024-12-07 14:02:52,578 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=59.7 pTM=0.323 ipTM=0.181 tol=2.87
2024-12-07 14:03:20,532 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=59.8 pTM=0.321 ipTM=0.18 tol=3.52
2024-12-07 14:03:48,507 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=59.6 pTM=0.321 ipTM=0.181 tol=3.66
2024-12-07 14:04:16,475 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=59.6 pTM=0.324 ipTM=0.187 tol=3.26
2024-12-07 14:04:44,462 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=59.6 pTM=0.321 ipTM=0.182 tol=4.07
2024-12-07 14:04:44,463 alphafold2_multimer_v3_model_3_seed_000 took 866.9s (30 recycles)
2024-12-07 14:05:13,098 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.5 pTM=0.378 ipTM=0.19
2024-12-07 14:05:41,019 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.5 pTM=0.372 ipTM=0.194 tol=8.77
2024-12-07 14:06:08,945 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=56.6 pTM=0.365 ipTM=0.197 tol=5.77
2024-12-07 14:06:36,865 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=56.5 pTM=0.368 ipTM=0.205 tol=4.46
2024-12-07 14:07:04,798 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=56.7 pTM=0.371 ipTM=0.202 tol=5.26
2024-12-07 14:07:32,731 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=57.2 pTM=0.372 ipTM=0.202 tol=3.83
2024-12-07 14:08:00,661 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56.8 pTM=0.371 ipTM=0.203 tol=3.1
2024-12-07 14:08:28,591 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=57 pTM=0.373 ipTM=0.208 tol=3.22
2024-12-07 14:08:56,510 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.9 pTM=0.372 ipTM=0.209 tol=2.96
2024-12-07 14:09:24,453 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=57 pTM=0.371 ipTM=0.207 tol=3.09
2024-12-07 14:09:52,375 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=56.6 pTM=0.37 ipTM=0.202 tol=3.48
2024-12-07 14:10:20,285 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=56.7 pTM=0.371 ipTM=0.209 tol=2.43
2024-12-07 14:10:48,199 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=56.7 pTM=0.372 ipTM=0.214 tol=2.05
2024-12-07 14:11:16,106 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=56.4 pTM=0.372 ipTM=0.21 tol=2.11
2024-12-07 14:11:44,017 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=56.9 pTM=0.374 ipTM=0.215 tol=1.96
2024-12-07 14:12:11,930 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=56.6 pTM=0.372 ipTM=0.209 tol=2.01
2024-12-07 14:12:39,840 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=56.5 pTM=0.374 ipTM=0.21 tol=1.37
2024-12-07 14:13:07,743 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=56.5 pTM=0.372 ipTM=0.208 tol=1.4
2024-12-07 14:13:35,656 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=56.4 pTM=0.372 ipTM=0.209 tol=1.46
2024-12-07 14:14:03,569 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=56.2 pTM=0.37 ipTM=0.21 tol=1.48
2024-12-07 14:14:31,477 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=56.3 pTM=0.373 ipTM=0.214 tol=1.11
2024-12-07 14:14:59,396 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=56.5 pTM=0.372 ipTM=0.212 tol=1.18
2024-12-07 14:15:27,302 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=56.1 pTM=0.371 ipTM=0.212 tol=1.34
2024-12-07 14:15:55,216 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=56.4 pTM=0.373 ipTM=0.213 tol=1.85
2024-12-07 14:16:23,128 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=56.2 pTM=0.373 ipTM=0.215 tol=1.77
2024-12-07 14:16:51,034 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=56.4 pTM=0.371 ipTM=0.212 tol=1.78
2024-12-07 14:17:18,932 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=56.4 pTM=0.373 ipTM=0.216 tol=1.47
2024-12-07 14:17:46,820 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=56.3 pTM=0.372 ipTM=0.219 tol=1.56
2024-12-07 14:18:14,695 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=56.3 pTM=0.37 ipTM=0.213 tol=1.83
2024-12-07 14:18:42,578 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=56.2 pTM=0.372 ipTM=0.214 tol=1.18
2024-12-07 14:19:10,455 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=56.1 pTM=0.371 ipTM=0.216 tol=1.36
2024-12-07 14:19:10,456 alphafold2_multimer_v3_model_4_seed_000 took 865.2s (30 recycles)
2024-12-07 14:19:39,260 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55.4 pTM=0.309 ipTM=0.129
2024-12-07 14:20:07,202 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=57.8 pTM=0.314 ipTM=0.198 tol=35.4
2024-12-07 14:20:35,102 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.5 pTM=0.323 ipTM=0.206 tol=10.8
2024-12-07 14:21:02,993 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=58.7 pTM=0.32 ipTM=0.203 tol=8.54
2024-12-07 14:21:30,874 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=58.8 pTM=0.323 ipTM=0.206 tol=5.42
2024-12-07 14:21:58,755 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=59.2 pTM=0.323 ipTM=0.197 tol=4.18
2024-12-07 14:22:26,609 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=58.9 pTM=0.323 ipTM=0.203 tol=3.48
2024-12-07 14:22:54,471 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=59 pTM=0.322 ipTM=0.2 tol=2.37
2024-12-07 14:23:22,334 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=59.1 pTM=0.325 ipTM=0.203 tol=5.07
2024-12-07 14:23:50,235 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=59.2 pTM=0.324 ipTM=0.202 tol=4.5
2024-12-07 14:24:18,151 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=58.8 pTM=0.324 ipTM=0.205 tol=6.76
2024-12-07 14:24:46,072 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=58.9 pTM=0.323 ipTM=0.199 tol=7.79
2024-12-07 14:25:13,985 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=59 pTM=0.324 ipTM=0.201 tol=6.59
2024-12-07 14:25:41,897 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=59 pTM=0.323 ipTM=0.201 tol=6.02
2024-12-07 14:26:09,828 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=58.9 pTM=0.323 ipTM=0.201 tol=6.18
2024-12-07 14:26:37,762 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=58.9 pTM=0.322 ipTM=0.202 tol=6.82
2024-12-07 14:27:05,681 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=58.9 pTM=0.323 ipTM=0.201 tol=7.16
2024-12-07 14:27:33,597 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=59 pTM=0.323 ipTM=0.198 tol=8.48
2024-12-07 14:28:01,538 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=58.8 pTM=0.323 ipTM=0.202 tol=11.2
2024-12-07 14:28:29,450 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=58.7 pTM=0.323 ipTM=0.202 tol=8.09
2024-12-07 14:28:57,349 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=58.9 pTM=0.324 ipTM=0.2 tol=10.1
2024-12-07 14:29:25,237 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=59.1 pTM=0.324 ipTM=0.198 tol=5.18
2024-12-07 14:29:53,117 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=56.5 pTM=0.324 ipTM=0.206 tol=16.9
2024-12-07 14:30:21,019 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=58.5 pTM=0.321 ipTM=0.201 tol=15.3
2024-12-07 14:30:48,936 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=58.8 pTM=0.325 ipTM=0.201 tol=8.05
2024-12-07 14:31:16,836 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=59 pTM=0.322 ipTM=0.199 tol=6.81
2024-12-07 14:31:44,746 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=59 pTM=0.324 ipTM=0.2 tol=8.09
2024-12-07 14:32:12,651 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=59 pTM=0.324 ipTM=0.206 tol=6.17
2024-12-07 14:32:40,568 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=59 pTM=0.323 ipTM=0.205 tol=2.18
2024-12-07 14:33:08,482 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=59 pTM=0.323 ipTM=0.203 tol=1.74
2024-12-07 14:33:36,390 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=58.9 pTM=0.323 ipTM=0.202 tol=2.15
2024-12-07 14:33:36,391 alphafold2_multimer_v3_model_5_seed_000 took 865.2s (30 recycles)
2024-12-07 14:33:37,137 reranking models by 'multimer' metric
2024-12-07 14:33:40,219 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 14:35:19,727 Relaxation took 102.6s
2024-12-07 14:35:19,727 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=60.5 pTM=0.323 ipTM=0.262
2024-12-07 14:46:05,498 Relaxation took 645.8s
2024-12-07 14:46:05,499 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=56.1 pTM=0.371 ipTM=0.216
2024-12-07 14:47:46,881 Relaxation took 101.4s
2024-12-07 14:47:46,881 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=61.6 pTM=0.324 ipTM=0.226
2024-12-07 14:49:19,985 Relaxation took 93.1s
2024-12-07 14:49:19,985 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=58.9 pTM=0.323 ipTM=0.202
2024-12-07 14:50:49,931 Relaxation took 89.9s
2024-12-07 14:50:49,931 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=59.6 pTM=0.321 ipTM=0.182
2024-12-07 14:50:52,266 Done