2024-12-07 14:40:23,163 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 14:40:23,463 Running on GPU
2024-12-07 14:40:26,878 Found 6 citations for tools or databases
2024-12-07 14:40:26,878 Query 1/1: RAB40B_RAB40AL (length 556)
2024-12-07 14:40:27,173 Sleeping for 5s. Reason: PENDING
2024-12-07 14:40:32,423 Sleeping for 9s. Reason: RUNNING
2024-12-07 14:40:41,684 Sleeping for 5s. Reason: RUNNING
2024-12-07 14:40:46,947 Sleeping for 9s. Reason: RUNNING
2024-12-07 14:40:56,204 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:41:04,467 Sleeping for 7s. Reason: RUNNING
2024-12-07 14:41:11,737 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:41:19,996 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:41:28,252 Sleeping for 10s. Reason: RUNNING
2024-12-07 14:41:38,521 Sleeping for 5s. Reason: RUNNING
2024-12-07 14:41:43,778 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:41:52,039 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:42:00,298 Sleeping for 5s. Reason: RUNNING
2024-12-07 14:42:05,555 Sleeping for 9s. Reason: RUNNING
2024-12-07 14:42:16,627 Sleeping for 8s. Reason: PENDING
2024-12-07 14:42:24,886 Sleeping for 7s. Reason: RUNNING
2024-12-07 14:42:32,143 Sleeping for 7s. Reason: RUNNING
2024-12-07 14:42:39,405 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:42:47,669 Sleeping for 9s. Reason: RUNNING
2024-12-07 14:42:56,935 Sleeping for 7s. Reason: RUNNING
2024-12-07 14:43:04,194 Sleeping for 6s. Reason: RUNNING
2024-12-07 14:43:10,453 Sleeping for 5s. Reason: RUNNING
2024-12-07 14:43:15,713 Sleeping for 10s. Reason: RUNNING
2024-12-07 14:43:25,972 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:43:34,228 Sleeping for 6s. Reason: RUNNING
2024-12-07 14:43:40,486 Sleeping for 7s. Reason: RUNNING
2024-12-07 14:43:47,742 Sleeping for 8s. Reason: RUNNING
2024-12-07 14:43:55,998 Sleeping for 7s. Reason: RUNNING
2024-12-07 14:44:03,260 Sleeping for 5s. Reason: RUNNING
2024-12-07 14:44:08,517 Sleeping for 5s. Reason: RUNNING
2024-12-07 14:44:17,053 Setting max_seq=508, max_extra_seq=2048
2024-12-07 14:46:32,405 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=54.6 pTM=0.374 ipTM=0.138
2024-12-07 14:46:38,930 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=53.8 pTM=0.366 ipTM=0.131 tol=9.23
2024-12-07 14:46:45,469 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=54 pTM=0.366 ipTM=0.126 tol=3.71
2024-12-07 14:46:52,007 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.9 pTM=0.362 ipTM=0.12 tol=5.57
2024-12-07 14:46:58,556 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.4 pTM=0.36 ipTM=0.122 tol=5.96
2024-12-07 14:47:05,106 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.9 pTM=0.361 ipTM=0.12 tol=4.05
2024-12-07 14:47:11,665 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=54.5 pTM=0.362 ipTM=0.122 tol=3.32
2024-12-07 14:47:18,302 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54.5 pTM=0.362 ipTM=0.121 tol=2.73
2024-12-07 14:47:24,889 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=53.7 pTM=0.363 ipTM=0.122 tol=3.34
2024-12-07 14:47:31,466 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.5 pTM=0.363 ipTM=0.125 tol=3.45
2024-12-07 14:47:38,047 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=54.4 pTM=0.363 ipTM=0.124 tol=2.41
2024-12-07 14:47:44,618 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.3 pTM=0.363 ipTM=0.124 tol=2.52
2024-12-07 14:47:51,193 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=54.7 pTM=0.368 ipTM=0.133 tol=1.77
2024-12-07 14:47:57,766 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.8 pTM=0.369 ipTM=0.138 tol=1.59
2024-12-07 14:48:04,352 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.9 pTM=0.368 ipTM=0.134 tol=2.04
2024-12-07 14:48:10,932 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=55.1 pTM=0.367 ipTM=0.134 tol=2.51
2024-12-07 14:48:17,516 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=55 pTM=0.366 ipTM=0.129 tol=1.98
2024-12-07 14:48:24,105 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.8 pTM=0.363 ipTM=0.122 tol=2.52
2024-12-07 14:48:30,690 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.2 pTM=0.364 ipTM=0.125 tol=4.95
2024-12-07 14:48:37,276 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.8 pTM=0.365 ipTM=0.129 tol=4.32
2024-12-07 14:48:43,861 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.7 pTM=0.364 ipTM=0.126 tol=3.09
2024-12-07 14:48:50,481 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=55 pTM=0.364 ipTM=0.125 tol=2.76
2024-12-07 14:48:57,095 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.5 pTM=0.367 ipTM=0.132 tol=4.31
2024-12-07 14:49:03,702 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=55.4 pTM=0.368 ipTM=0.135 tol=4.02
2024-12-07 14:49:10,292 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=55 pTM=0.368 ipTM=0.134 tol=2.7
2024-12-07 14:49:16,896 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=55.3 pTM=0.37 ipTM=0.139 tol=3.33
2024-12-07 14:49:23,492 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=55.2 pTM=0.369 ipTM=0.137 tol=3.06
2024-12-07 14:49:30,089 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=55.3 pTM=0.369 ipTM=0.137 tol=3.76
2024-12-07 14:49:36,684 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=55.1 pTM=0.369 ipTM=0.135 tol=4.46
2024-12-07 14:49:43,283 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.5 pTM=0.363 ipTM=0.127 tol=5.37
2024-12-07 14:49:49,887 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=54.4 pTM=0.363 ipTM=0.125 tol=2.73
2024-12-07 14:49:49,888 alphafold2_multimer_v3_model_1_seed_000 took 327.8s (30 recycles)
2024-12-07 14:49:56,685 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=56.9 pTM=0.392 ipTM=0.155
2024-12-07 14:50:03,298 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=57.2 pTM=0.37 ipTM=0.134 tol=12
2024-12-07 14:50:09,953 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=62 pTM=0.517 ipTM=0.442 tol=11.5
2024-12-07 14:50:16,640 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=64.1 pTM=0.494 ipTM=0.383 tol=13.4
2024-12-07 14:50:23,348 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=62.9 pTM=0.446 ipTM=0.3 tol=8.11
2024-12-07 14:50:30,031 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=61.5 pTM=0.417 ipTM=0.247 tol=8.45
2024-12-07 14:50:36,702 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.5 pTM=0.405 ipTM=0.22 tol=5.96
2024-12-07 14:50:43,363 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.6 pTM=0.422 ipTM=0.255 tol=5
2024-12-07 14:50:50,032 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=59.1 pTM=0.388 ipTM=0.177 tol=5.41
2024-12-07 14:50:56,682 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=57.9 pTM=0.383 ipTM=0.146 tol=10.8
2024-12-07 14:51:03,323 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=57.3 pTM=0.376 ipTM=0.136 tol=7.45
2024-12-07 14:51:09,950 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=57.8 pTM=0.367 ipTM=0.122 tol=3.81
2024-12-07 14:51:16,589 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=57.5 pTM=0.37 ipTM=0.123 tol=5.3
2024-12-07 14:51:23,215 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=57.5 pTM=0.37 ipTM=0.125 tol=3.36
2024-12-07 14:51:29,854 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=57.2 pTM=0.369 ipTM=0.123 tol=3.68
2024-12-07 14:51:36,504 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=59.7 pTM=0.417 ipTM=0.245 tol=11.1
2024-12-07 14:51:43,168 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=58.9 pTM=0.429 ipTM=0.268 tol=5.5
2024-12-07 14:51:49,870 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=59.8 pTM=0.408 ipTM=0.225 tol=8.22
2024-12-07 14:51:56,583 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=57.4 pTM=0.376 ipTM=0.158 tol=9.38
2024-12-07 14:52:03,250 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=57.7 pTM=0.379 ipTM=0.147 tol=9.82
2024-12-07 14:52:09,898 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=57.5 pTM=0.366 ipTM=0.118 tol=7.68
2024-12-07 14:52:16,536 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=57.4 pTM=0.371 ipTM=0.125 tol=3.7
2024-12-07 14:52:23,180 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=58.1 pTM=0.368 ipTM=0.119 tol=4.59
2024-12-07 14:52:29,838 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.1 pTM=0.428 ipTM=0.264 tol=10.5
2024-12-07 14:52:36,498 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=58 pTM=0.378 ipTM=0.139 tol=7.86
2024-12-07 14:52:43,129 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=58.7 pTM=0.379 ipTM=0.139 tol=8.08
2024-12-07 14:52:49,759 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=57.8 pTM=0.375 ipTM=0.13 tol=3.47
2024-12-07 14:52:56,408 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=58.2 pTM=0.375 ipTM=0.133 tol=8.35
2024-12-07 14:53:03,050 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=57.8 pTM=0.386 ipTM=0.153 tol=8.8
2024-12-07 14:53:09,676 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=58 pTM=0.373 ipTM=0.129 tol=3.81
2024-12-07 14:53:16,303 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=57.4 pTM=0.375 ipTM=0.127 tol=6.86
2024-12-07 14:53:16,304 alphafold2_multimer_v3_model_2_seed_000 took 206.2s (30 recycles)
2024-12-07 14:53:23,160 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=55.6 pTM=0.369 ipTM=0.15
2024-12-07 14:53:29,818 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=54.8 pTM=0.356 ipTM=0.121 tol=10.6
2024-12-07 14:53:36,479 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=56 pTM=0.359 ipTM=0.124 tol=6.5
2024-12-07 14:53:43,125 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=56.3 pTM=0.362 ipTM=0.12 tol=10.9
2024-12-07 14:53:49,772 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=55.8 pTM=0.363 ipTM=0.127 tol=4.51
2024-12-07 14:53:56,417 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.7 pTM=0.363 ipTM=0.122 tol=4.73
2024-12-07 14:54:03,082 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.1 pTM=0.359 ipTM=0.121 tol=3.54
2024-12-07 14:54:09,713 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.2 pTM=0.358 ipTM=0.113 tol=4.94
2024-12-07 14:54:16,355 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=54.4 pTM=0.354 ipTM=0.118 tol=6.09
2024-12-07 14:54:22,997 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=54.5 pTM=0.355 ipTM=0.113 tol=4.17
2024-12-07 14:54:29,644 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=58.1 pTM=0.434 ipTM=0.276 tol=11.4
2024-12-07 14:54:36,322 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=58.7 pTM=0.495 ipTM=0.403 tol=7.04
2024-12-07 14:54:42,998 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.1 pTM=0.501 ipTM=0.412 tol=5.46
2024-12-07 14:54:49,662 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=61.4 pTM=0.526 ipTM=0.459 tol=7.69
2024-12-07 14:54:56,373 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61.5 pTM=0.533 ipTM=0.471 tol=3
2024-12-07 14:55:03,081 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62.3 pTM=0.544 ipTM=0.491 tol=2.42
2024-12-07 14:55:09,770 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61.8 pTM=0.542 ipTM=0.488 tol=1.62
2024-12-07 14:55:16,450 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=62.7 pTM=0.551 ipTM=0.505 tol=7.73
2024-12-07 14:55:23,131 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=62.5 pTM=0.55 ipTM=0.504 tol=7.71
2024-12-07 14:55:29,820 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62.7 pTM=0.554 ipTM=0.512 tol=7.79
2024-12-07 14:55:36,498 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=62.8 pTM=0.555 ipTM=0.514 tol=2.06
2024-12-07 14:55:43,173 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=63 pTM=0.559 ipTM=0.521 tol=3.38
2024-12-07 14:55:49,850 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=62.8 pTM=0.555 ipTM=0.513 tol=8.87
2024-12-07 14:55:56,529 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=63.4 pTM=0.561 ipTM=0.524 tol=8.65
2024-12-07 14:56:03,194 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=63 pTM=0.555 ipTM=0.514 tol=4.86
2024-12-07 14:56:09,878 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=63.1 pTM=0.562 ipTM=0.525 tol=2.82
2024-12-07 14:56:16,573 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=62.8 pTM=0.556 ipTM=0.517 tol=3.77
2024-12-07 14:56:23,267 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=63 pTM=0.562 ipTM=0.526 tol=2.95
2024-12-07 14:56:29,997 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=62.7 pTM=0.556 ipTM=0.515 tol=2.87
2024-12-07 14:56:36,680 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=63.1 pTM=0.561 ipTM=0.524 tol=7.47
2024-12-07 14:56:43,355 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=63.2 pTM=0.562 ipTM=0.527 tol=7.45
2024-12-07 14:56:43,355 alphafold2_multimer_v3_model_3_seed_000 took 206.8s (30 recycles)
2024-12-07 14:56:50,137 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=55.9 pTM=0.437 ipTM=0.24
2024-12-07 14:56:56,741 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.8 pTM=0.38 ipTM=0.147 tol=9.12
2024-12-07 14:57:03,354 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=56.4 pTM=0.416 ipTM=0.214 tol=6.84
2024-12-07 14:57:09,961 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=57.8 pTM=0.38 ipTM=0.156 tol=5.05
2024-12-07 14:57:16,581 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=57 pTM=0.374 ipTM=0.13 tol=2.58
2024-12-07 14:57:23,192 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=56.7 pTM=0.373 ipTM=0.138 tol=4.11
2024-12-07 14:57:29,813 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56.8 pTM=0.376 ipTM=0.134 tol=3.7
2024-12-07 14:57:36,423 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=56.6 pTM=0.374 ipTM=0.135 tol=3.41
2024-12-07 14:57:43,055 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.8 pTM=0.373 ipTM=0.132 tol=2.28
2024-12-07 14:57:49,665 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=56.9 pTM=0.37 ipTM=0.141 tol=3.94
2024-12-07 14:57:56,294 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=56.8 pTM=0.371 ipTM=0.129 tol=3.72
2024-12-07 14:58:02,944 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=56.9 pTM=0.372 ipTM=0.127 tol=3.73
2024-12-07 14:58:09,585 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=56.3 pTM=0.371 ipTM=0.127 tol=3
2024-12-07 14:58:16,188 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=57.2 pTM=0.369 ipTM=0.14 tol=3.66
2024-12-07 14:58:22,804 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=56.6 pTM=0.371 ipTM=0.128 tol=3.54
2024-12-07 14:58:29,413 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=56.8 pTM=0.37 ipTM=0.142 tol=2.96
2024-12-07 14:58:36,027 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=56.2 pTM=0.373 ipTM=0.131 tol=3.34
2024-12-07 14:58:42,646 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=56.5 pTM=0.37 ipTM=0.13 tol=2.93
2024-12-07 14:58:49,273 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=56.6 pTM=0.373 ipTM=0.132 tol=3.74
2024-12-07 14:58:55,883 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=57.3 pTM=0.372 ipTM=0.13 tol=3.78
2024-12-07 14:59:02,496 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.8 pTM=0.375 ipTM=0.134 tol=3.93
2024-12-07 14:59:09,113 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=57.3 pTM=0.37 ipTM=0.142 tol=4.32
2024-12-07 14:59:15,730 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=56.6 pTM=0.37 ipTM=0.124 tol=3.54
2024-12-07 14:59:22,348 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=58 pTM=0.373 ipTM=0.15 tol=3.61
2024-12-07 14:59:28,968 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=56.4 pTM=0.375 ipTM=0.136 tol=4.16
2024-12-07 14:59:35,579 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=56.9 pTM=0.371 ipTM=0.142 tol=3.89
2024-12-07 14:59:42,187 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=56.1 pTM=0.372 ipTM=0.13 tol=3.89
2024-12-07 14:59:48,807 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=56.8 pTM=0.372 ipTM=0.141 tol=3.59
2024-12-07 14:59:55,432 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=56 pTM=0.376 ipTM=0.136 tol=3.94
2024-12-07 15:00:02,055 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=57.1 pTM=0.37 ipTM=0.151 tol=4.33
2024-12-07 15:00:08,677 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=56 pTM=0.375 ipTM=0.137 tol=4.79
2024-12-07 15:00:08,678 alphafold2_multimer_v3_model_4_seed_000 took 205.1s (30 recycles)
2024-12-07 15:00:15,504 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55.1 pTM=0.384 ipTM=0.151
2024-12-07 15:00:22,143 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=54.5 pTM=0.418 ipTM=0.233 tol=10.1
2024-12-07 15:00:28,804 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=55.8 pTM=0.383 ipTM=0.152 tol=14.5
2024-12-07 15:00:35,460 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=55.8 pTM=0.386 ipTM=0.161 tol=7.51
2024-12-07 15:00:42,120 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=55.6 pTM=0.382 ipTM=0.147 tol=3.62
2024-12-07 15:00:48,770 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=55.2 pTM=0.39 ipTM=0.168 tol=3.91
2024-12-07 15:00:55,441 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55.6 pTM=0.382 ipTM=0.148 tol=3.51
2024-12-07 15:01:02,099 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=55.7 pTM=0.421 ipTM=0.233 tol=3.72
2024-12-07 15:01:08,758 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=56 pTM=0.389 ipTM=0.169 tol=3.06
2024-12-07 15:01:15,427 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55.6 pTM=0.389 ipTM=0.162 tol=2.56
2024-12-07 15:01:22,090 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.2 pTM=0.383 ipTM=0.152 tol=2.04
2024-12-07 15:01:28,753 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55 pTM=0.382 ipTM=0.151 tol=5.09
2024-12-07 15:01:35,423 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.5 pTM=0.397 ipTM=0.175 tol=4.59
2024-12-07 15:01:42,082 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=54.9 pTM=0.387 ipTM=0.16 tol=4.52
2024-12-07 15:01:48,735 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.6 pTM=0.386 ipTM=0.155 tol=2.9
2024-12-07 15:01:55,385 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.2 pTM=0.386 ipTM=0.162 tol=1.78
2024-12-07 15:02:02,047 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.2 pTM=0.381 ipTM=0.144 tol=2.51
2024-12-07 15:02:08,705 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=54.7 pTM=0.379 ipTM=0.145 tol=3.4
2024-12-07 15:02:15,374 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.4 pTM=0.382 ipTM=0.148 tol=2.89
2024-12-07 15:02:22,041 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=54.8 pTM=0.372 ipTM=0.134 tol=3.46
2024-12-07 15:02:28,698 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.2 pTM=0.374 ipTM=0.135 tol=3.67
2024-12-07 15:02:35,350 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.2 pTM=0.387 ipTM=0.166 tol=2.61
2024-12-07 15:02:42,011 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.4 pTM=0.375 ipTM=0.132 tol=3.82
2024-12-07 15:02:48,655 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.2 pTM=0.394 ipTM=0.176 tol=4.32
2024-12-07 15:02:55,328 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.4 pTM=0.378 ipTM=0.14 tol=3.23
2024-12-07 15:03:01,977 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55 pTM=0.385 ipTM=0.159 tol=2.71
2024-12-07 15:03:08,641 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.4 pTM=0.375 ipTM=0.135 tol=3.58
2024-12-07 15:03:15,297 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=54.2 pTM=0.377 ipTM=0.141 tol=3.96
2024-12-07 15:03:21,967 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.3 pTM=0.374 ipTM=0.133 tol=2.08
2024-12-07 15:03:28,624 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=54.4 pTM=0.375 ipTM=0.137 tol=2.66
2024-12-07 15:03:35,290 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.5 pTM=0.375 ipTM=0.135 tol=3.78
2024-12-07 15:03:35,290 alphafold2_multimer_v3_model_5_seed_000 took 206.4s (30 recycles)
2024-12-07 15:03:35,497 reranking models by 'multimer' metric
2024-12-07 15:03:36,152 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 15:04:08,102 Relaxation took 32.6s
2024-12-07 15:04:08,103 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=63.2 pTM=0.562 ipTM=0.527
2024-12-07 15:04:42,123 Relaxation took 34.0s
2024-12-07 15:04:42,123 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=56 pTM=0.375 ipTM=0.137
2024-12-07 15:05:15,957 Relaxation took 33.8s
2024-12-07 15:05:15,957 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.5 pTM=0.375 ipTM=0.135
2024-12-07 15:05:48,750 Relaxation took 32.8s
2024-12-07 15:05:48,750 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=57.4 pTM=0.375 ipTM=0.127
2024-12-07 15:06:15,397 Relaxation took 26.6s
2024-12-07 15:06:15,398 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=54.4 pTM=0.363 ipTM=0.125
2024-12-07 15:06:16,500 Done