2024-12-07 15:12:22,928 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 15:12:23,274 Running on GPU
2024-12-07 15:12:24,042 Found 6 citations for tools or databases
2024-12-07 15:12:24,042 Query 1/1: RABGEF1_TNFRSF1A (length 946)
2024-12-07 15:12:24,314 Sleeping for 10s. Reason: PENDING
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2024-12-07 15:13:54,197 Sleeping for 9s. Reason: RUNNING
2024-12-07 15:14:03,468 Sleeping for 5s. Reason: RUNNING
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2024-12-07 15:15:04,798 Sleeping for 8s. Reason: RUNNING
2024-12-07 15:15:13,054 Sleeping for 7s. Reason: RUNNING
2024-12-07 15:15:21,434 Sleeping for 8s. Reason: PENDING
2024-12-07 15:15:29,688 Sleeping for 5s. Reason: RUNNING
2024-12-07 15:15:34,950 Sleeping for 10s. Reason: RUNNING
2024-12-07 15:15:45,211 Sleeping for 8s. Reason: RUNNING
2024-12-07 15:15:53,476 Sleeping for 8s. Reason: RUNNING
2024-12-07 15:16:01,734 Sleeping for 10s. Reason: RUNNING
2024-12-07 15:16:11,997 Sleeping for 9s. Reason: RUNNING
2024-12-07 15:16:21,258 Sleeping for 7s. Reason: RUNNING
2024-12-07 15:16:28,515 Sleeping for 5s. Reason: RUNNING
2024-12-07 15:16:33,770 Sleeping for 7s. Reason: RUNNING
2024-12-07 15:16:41,035 Sleeping for 5s. Reason: RUNNING
2024-12-07 15:16:46,288 Sleeping for 7s. Reason: RUNNING
2024-12-07 15:16:56,071 Setting max_seq=508, max_extra_seq=2048
2024-12-07 15:20:23,719 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=59.9 pTM=0.397 ipTM=0.122
2024-12-07 15:20:47,501 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.8 pTM=0.41 ipTM=0.131 tol=12.3
2024-12-07 15:21:11,340 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=59 pTM=0.408 ipTM=0.14 tol=8.42
2024-12-07 15:21:35,226 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=59.2 pTM=0.405 ipTM=0.145 tol=7.76
2024-12-07 15:21:59,165 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=59.1 pTM=0.402 ipTM=0.151 tol=2.96
2024-12-07 15:22:23,136 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=59.4 pTM=0.405 ipTM=0.158 tol=3.27
2024-12-07 15:22:47,135 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=59.5 pTM=0.406 ipTM=0.164 tol=2.13
2024-12-07 15:23:11,138 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=59.5 pTM=0.411 ipTM=0.189 tol=2.68
2024-12-07 15:23:35,167 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=59.6 pTM=0.409 ipTM=0.184 tol=1.83
2024-12-07 15:23:59,236 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=59.8 pTM=0.413 ipTM=0.187 tol=1.99
2024-12-07 15:24:23,278 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=59.6 pTM=0.412 ipTM=0.2 tol=1.37
2024-12-07 15:24:47,338 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=59.8 pTM=0.412 ipTM=0.196 tol=1.85
2024-12-07 15:25:11,373 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=59.5 pTM=0.412 ipTM=0.201 tol=1.7
2024-12-07 15:25:35,391 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=59.8 pTM=0.415 ipTM=0.207 tol=2.21
2024-12-07 15:25:59,403 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=59.9 pTM=0.416 ipTM=0.207 tol=1.39
2024-12-07 15:26:23,435 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=59.5 pTM=0.413 ipTM=0.204 tol=1.45
2024-12-07 15:26:47,451 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60 pTM=0.417 ipTM=0.218 tol=2.55
2024-12-07 15:27:11,480 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=59.8 pTM=0.417 ipTM=0.219 tol=1.4
2024-12-07 15:27:35,508 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=59.8 pTM=0.418 ipTM=0.214 tol=1.74
2024-12-07 15:27:59,537 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=59.9 pTM=0.416 ipTM=0.207 tol=1.79
2024-12-07 15:28:23,575 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=59.4 pTM=0.415 ipTM=0.201 tol=1.43
2024-12-07 15:28:47,605 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=59.7 pTM=0.414 ipTM=0.197 tol=2.04
2024-12-07 15:29:11,644 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=59.7 pTM=0.414 ipTM=0.197 tol=1.49
2024-12-07 15:29:35,698 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=59.7 pTM=0.412 ipTM=0.194 tol=1.72
2024-12-07 15:29:59,752 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=59.7 pTM=0.417 ipTM=0.21 tol=2.06
2024-12-07 15:30:23,800 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=59.6 pTM=0.41 ipTM=0.203 tol=2.12
2024-12-07 15:30:47,856 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60 pTM=0.416 ipTM=0.2 tol=1.67
2024-12-07 15:31:11,893 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=59.8 pTM=0.412 ipTM=0.188 tol=1.58
2024-12-07 15:31:35,936 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=59.8 pTM=0.413 ipTM=0.186 tol=2.63
2024-12-07 15:31:59,985 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=59.6 pTM=0.411 ipTM=0.183 tol=1.63
2024-12-07 15:32:24,036 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=59.8 pTM=0.414 ipTM=0.188 tol=2.04
2024-12-07 15:32:24,036 alphafold2_multimer_v3_model_1_seed_000 took 921.3s (30 recycles)
2024-12-07 15:32:48,856 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=58.7 pTM=0.409 ipTM=0.167
2024-12-07 15:33:13,019 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=59.6 pTM=0.411 ipTM=0.162 tol=14.9
2024-12-07 15:33:37,134 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=59.6 pTM=0.413 ipTM=0.173 tol=16.5
2024-12-07 15:34:01,271 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=60.4 pTM=0.411 ipTM=0.165 tol=12.6
2024-12-07 15:34:25,402 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.4 pTM=0.411 ipTM=0.165 tol=6.48
2024-12-07 15:34:49,534 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.4 pTM=0.413 ipTM=0.171 tol=3.1
2024-12-07 15:35:13,679 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.9 pTM=0.414 ipTM=0.17 tol=2.24
2024-12-07 15:35:37,816 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.8 pTM=0.415 ipTM=0.171 tol=2.36
2024-12-07 15:36:01,958 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=60.6 pTM=0.415 ipTM=0.172 tol=1.71
2024-12-07 15:36:26,103 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.8 pTM=0.415 ipTM=0.173 tol=3.32
2024-12-07 15:36:50,240 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.7 pTM=0.417 ipTM=0.176 tol=3.28
2024-12-07 15:37:14,373 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.8 pTM=0.416 ipTM=0.175 tol=4
2024-12-07 15:37:38,514 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.3 pTM=0.417 ipTM=0.179 tol=4.66
2024-12-07 15:38:02,636 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.4 pTM=0.415 ipTM=0.175 tol=6.46
2024-12-07 15:38:26,776 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.5 pTM=0.415 ipTM=0.175 tol=4.62
2024-12-07 15:38:50,913 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.2 pTM=0.417 ipTM=0.176 tol=2.78
2024-12-07 15:39:15,051 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.8 pTM=0.417 ipTM=0.18 tol=2.75
2024-12-07 15:39:39,167 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.5 pTM=0.417 ipTM=0.176 tol=3.27
2024-12-07 15:40:03,293 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.6 pTM=0.417 ipTM=0.18 tol=3.33
2024-12-07 15:40:27,399 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.3 pTM=0.416 ipTM=0.18 tol=3.83
2024-12-07 15:40:51,535 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=60.2 pTM=0.416 ipTM=0.184 tol=3.75
2024-12-07 15:41:15,672 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.4 pTM=0.417 ipTM=0.179 tol=4.98
2024-12-07 15:41:39,821 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.5 pTM=0.415 ipTM=0.179 tol=3.12
2024-12-07 15:42:03,955 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.4 pTM=0.415 ipTM=0.176 tol=3.63
2024-12-07 15:42:28,108 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.4 pTM=0.415 ipTM=0.178 tol=3.09
2024-12-07 15:42:52,247 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.3 pTM=0.415 ipTM=0.176 tol=1.66
2024-12-07 15:43:16,383 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.5 pTM=0.417 ipTM=0.179 tol=3
2024-12-07 15:43:40,519 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.4 pTM=0.416 ipTM=0.177 tol=2.87
2024-12-07 15:44:04,652 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.6 pTM=0.418 ipTM=0.178 tol=3.56
2024-12-07 15:44:28,778 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.3 pTM=0.416 ipTM=0.173 tol=3.75
2024-12-07 15:44:52,919 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.4 pTM=0.417 ipTM=0.177 tol=3.56
2024-12-07 15:44:52,920 alphafold2_multimer_v3_model_2_seed_000 took 748.2s (30 recycles)
2024-12-07 15:45:17,753 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=55.9 pTM=0.402 ipTM=0.149
2024-12-07 15:45:41,934 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=56.3 pTM=0.407 ipTM=0.14 tol=9.19
2024-12-07 15:46:06,112 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=55.4 pTM=0.409 ipTM=0.155 tol=10.9
2024-12-07 15:46:30,291 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=56.2 pTM=0.408 ipTM=0.15 tol=7.36
2024-12-07 15:46:54,473 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=56.5 pTM=0.408 ipTM=0.154 tol=4.43
2024-12-07 15:47:18,636 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=57.2 pTM=0.418 ipTM=0.194 tol=4.44
2024-12-07 15:47:42,797 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=58 pTM=0.423 ipTM=0.218 tol=4.46
2024-12-07 15:48:06,959 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=58 pTM=0.43 ipTM=0.235 tol=3.24
2024-12-07 15:48:31,104 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=58.3 pTM=0.435 ipTM=0.259 tol=3.42
2024-12-07 15:48:55,265 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=58.4 pTM=0.432 ipTM=0.251 tol=2.09
2024-12-07 15:49:19,419 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=58.3 pTM=0.433 ipTM=0.257 tol=3.21
2024-12-07 15:49:43,545 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=58.8 pTM=0.446 ipTM=0.303 tol=3.32
2024-12-07 15:50:07,665 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=58.5 pTM=0.439 ipTM=0.278 tol=3.04
2024-12-07 15:50:31,782 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=58.5 pTM=0.436 ipTM=0.268 tol=2.95
2024-12-07 15:50:55,900 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=58.3 pTM=0.433 ipTM=0.26 tol=2.9
2024-12-07 15:51:20,003 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=58.4 pTM=0.439 ipTM=0.277 tol=2.52
2024-12-07 15:51:44,109 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=58.4 pTM=0.434 ipTM=0.255 tol=1.8
2024-12-07 15:52:08,238 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=58.2 pTM=0.434 ipTM=0.255 tol=1.7
2024-12-07 15:52:32,340 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=58.6 pTM=0.439 ipTM=0.274 tol=2.13
2024-12-07 15:52:56,432 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=58.4 pTM=0.43 ipTM=0.251 tol=2
2024-12-07 15:53:20,520 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=58.2 pTM=0.432 ipTM=0.252 tol=1.88
2024-12-07 15:53:44,609 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=58.5 pTM=0.437 ipTM=0.263 tol=2.13
2024-12-07 15:54:08,693 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=58.5 pTM=0.435 ipTM=0.265 tol=2.44
2024-12-07 15:54:32,770 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=58.6 pTM=0.439 ipTM=0.28 tol=2.09
2024-12-07 15:54:56,863 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=58.2 pTM=0.427 ipTM=0.234 tol=1.55
2024-12-07 15:55:20,942 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=58.2 pTM=0.44 ipTM=0.279 tol=2.81
2024-12-07 15:55:45,025 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=58.8 pTM=0.445 ipTM=0.288 tol=2.28
2024-12-07 15:56:09,109 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=58.3 pTM=0.434 ipTM=0.26 tol=1.91
2024-12-07 15:56:33,214 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=58.2 pTM=0.433 ipTM=0.254 tol=1.85
2024-12-07 15:56:57,303 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=58.5 pTM=0.437 ipTM=0.266 tol=1.19
2024-12-07 15:57:21,386 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=58.3 pTM=0.432 ipTM=0.248 tol=1.44
2024-12-07 15:57:21,387 alphafold2_multimer_v3_model_3_seed_000 took 747.8s (30 recycles)
2024-12-07 15:57:46,167 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=55.8 pTM=0.428 ipTM=0.227
2024-12-07 15:58:10,229 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=56.4 pTM=0.451 ipTM=0.342 tol=15.6
2024-12-07 15:58:34,361 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=56.3 pTM=0.396 ipTM=0.186 tol=9.45
2024-12-07 15:58:58,512 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=55.1 pTM=0.389 ipTM=0.173 tol=14.7
2024-12-07 15:59:22,634 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55.1 pTM=0.387 ipTM=0.173 tol=6.23
2024-12-07 15:59:46,748 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55 pTM=0.39 ipTM=0.18 tol=7.07
2024-12-07 16:00:10,890 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=55 pTM=0.386 ipTM=0.172 tol=8.35
2024-12-07 16:00:35,040 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=54.7 pTM=0.392 ipTM=0.178 tol=12.4
2024-12-07 16:00:59,156 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54.6 pTM=0.384 ipTM=0.181 tol=12.1
2024-12-07 16:01:23,312 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=54.8 pTM=0.388 ipTM=0.179 tol=11.3
2024-12-07 16:01:47,406 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=54.9 pTM=0.384 ipTM=0.186 tol=12.4
2024-12-07 16:02:11,584 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=54.9 pTM=0.386 ipTM=0.177 tol=13.6
2024-12-07 16:02:35,705 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=54.4 pTM=0.387 ipTM=0.184 tol=9.1
2024-12-07 16:02:59,892 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=54.5 pTM=0.387 ipTM=0.19 tol=12.6
2024-12-07 16:03:23,995 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=54.8 pTM=0.383 ipTM=0.185 tol=11.8
2024-12-07 16:03:48,162 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=54.6 pTM=0.388 ipTM=0.178 tol=8.7
2024-12-07 16:04:12,284 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=54.7 pTM=0.386 ipTM=0.181 tol=12.1
2024-12-07 16:04:36,417 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=53.3 pTM=0.394 ipTM=0.188 tol=14.8
2024-12-07 16:05:00,552 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=54.6 pTM=0.394 ipTM=0.217 tol=11.7
2024-12-07 16:05:24,695 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.4 pTM=0.391 ipTM=0.182 tol=9.18
2024-12-07 16:05:48,814 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=54.6 pTM=0.39 ipTM=0.193 tol=12.2
2024-12-07 16:06:12,996 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=54.9 pTM=0.386 ipTM=0.174 tol=9.66
2024-12-07 16:06:37,144 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=54.8 pTM=0.392 ipTM=0.188 tol=11.1
2024-12-07 16:07:01,311 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55.4 pTM=0.39 ipTM=0.19 tol=12.4
2024-12-07 16:07:25,418 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=54.6 pTM=0.398 ipTM=0.212 tol=10.7
2024-12-07 16:07:49,542 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55.2 pTM=0.386 ipTM=0.185 tol=8.84
2024-12-07 16:08:13,662 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=55 pTM=0.395 ipTM=0.204 tol=8.62
2024-12-07 16:08:37,777 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.1 pTM=0.393 ipTM=0.212 tol=9.16
2024-12-07 16:09:01,879 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=55 pTM=0.404 ipTM=0.23 tol=9.13
2024-12-07 16:09:25,998 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=54.7 pTM=0.393 ipTM=0.207 tol=13.5
2024-12-07 16:09:50,144 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55.1 pTM=0.388 ipTM=0.188 tol=9.8
2024-12-07 16:09:50,145 alphafold2_multimer_v3_model_4_seed_000 took 748.0s (30 recycles)
2024-12-07 16:10:15,006 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55.7 pTM=0.388 ipTM=0.162
2024-12-07 16:10:39,176 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=56.3 pTM=0.408 ipTM=0.226 tol=14.7
2024-12-07 16:11:03,382 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=57.7 pTM=0.39 ipTM=0.149 tol=11.1
2024-12-07 16:11:27,602 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=56.8 pTM=0.392 ipTM=0.158 tol=7.29
2024-12-07 16:11:51,754 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=57 pTM=0.399 ipTM=0.171 tol=6.52
2024-12-07 16:12:15,974 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=58.1 pTM=0.396 ipTM=0.15 tol=9.23
2024-12-07 16:12:40,165 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=57.1 pTM=0.398 ipTM=0.156 tol=9.14
2024-12-07 16:13:04,363 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=57.7 pTM=0.401 ipTM=0.156 tol=8.14
2024-12-07 16:13:28,570 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=58.1 pTM=0.401 ipTM=0.151 tol=9.69
2024-12-07 16:13:52,773 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=57.8 pTM=0.402 ipTM=0.155 tol=7.66
2024-12-07 16:14:16,984 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=57.7 pTM=0.402 ipTM=0.156 tol=4.75
2024-12-07 16:14:41,174 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=57.3 pTM=0.401 ipTM=0.159 tol=7.74
2024-12-07 16:15:05,356 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=56.4 pTM=0.409 ipTM=0.266 tol=13.9
2024-12-07 16:15:29,551 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=57.5 pTM=0.399 ipTM=0.156 tol=12.4
2024-12-07 16:15:53,759 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57.8 pTM=0.403 ipTM=0.156 tol=9.5
2024-12-07 16:16:17,979 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=57.8 pTM=0.402 ipTM=0.156 tol=5.8
2024-12-07 16:16:42,188 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=57.8 pTM=0.403 ipTM=0.158 tol=6.62
2024-12-07 16:17:06,396 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=57.8 pTM=0.404 ipTM=0.155 tol=7.02
2024-12-07 16:17:30,607 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=57.9 pTM=0.404 ipTM=0.155 tol=6.2
2024-12-07 16:17:54,843 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=58.2 pTM=0.406 ipTM=0.158 tol=6.31
2024-12-07 16:18:19,077 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=57.8 pTM=0.404 ipTM=0.155 tol=4.04
2024-12-07 16:18:43,419 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=58.1 pTM=0.404 ipTM=0.154 tol=5.78
2024-12-07 16:19:07,800 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=57.8 pTM=0.403 ipTM=0.156 tol=5.68
2024-12-07 16:19:32,189 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=58 pTM=0.403 ipTM=0.153 tol=4.9
2024-12-07 16:19:56,585 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=57.8 pTM=0.403 ipTM=0.154 tol=4.59
2024-12-07 16:20:20,924 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=57.8 pTM=0.405 ipTM=0.157 tol=5.7
2024-12-07 16:20:45,238 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=57.9 pTM=0.404 ipTM=0.151 tol=5.27
2024-12-07 16:21:09,555 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=57.8 pTM=0.405 ipTM=0.158 tol=3.06
2024-12-07 16:21:33,886 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=57.7 pTM=0.403 ipTM=0.154 tol=4.61
2024-12-07 16:21:58,221 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=57.8 pTM=0.405 ipTM=0.156 tol=4.81
2024-12-07 16:22:22,537 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=57.9 pTM=0.405 ipTM=0.15 tol=6.59
2024-12-07 16:22:22,538 alphafold2_multimer_v3_model_5_seed_000 took 751.7s (30 recycles)
2024-12-07 16:22:23,263 reranking models by 'multimer' metric
2024-12-07 16:22:24,704 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 16:24:07,273 Relaxation took 104.0s
2024-12-07 16:24:07,273 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=58.3 pTM=0.432 ipTM=0.248
2024-12-07 16:25:20,597 Relaxation took 73.3s
2024-12-07 16:25:20,597 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=59.8 pTM=0.414 ipTM=0.188
2024-12-07 16:27:22,055 Relaxation took 121.5s
2024-12-07 16:27:22,056 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55.1 pTM=0.388 ipTM=0.188
2024-12-07 16:29:00,057 Relaxation took 98.0s
2024-12-07 16:29:00,057 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.4 pTM=0.417 ipTM=0.177
2024-12-07 16:30:44,209 Relaxation took 104.2s
2024-12-07 16:30:44,209 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=57.9 pTM=0.405 ipTM=0.15
2024-12-07 16:30:46,457 Done