2024-12-07 16:01:40,165 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 16:01:40,469 Running on GPU
2024-12-07 16:01:42,198 Found 6 citations for tools or databases
2024-12-07 16:01:42,198 Query 1/1: RBBP4_HAT1 (length 844)
2024-12-07 16:01:42,458 Sleeping for 10s. Reason: PENDING
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2024-12-07 16:03:13,341 Sleeping for 6s. Reason: RUNNING
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2024-12-07 16:03:39,390 Sleeping for 7s. Reason: RUNNING
2024-12-07 16:03:48,369 Sleeping for 7s. Reason: PENDING
2024-12-07 16:03:55,630 Sleeping for 6s. Reason: RUNNING
2024-12-07 16:04:01,886 Sleeping for 6s. Reason: RUNNING
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2024-12-07 16:04:20,662 Sleeping for 6s. Reason: RUNNING
2024-12-07 16:04:26,918 Sleeping for 8s. Reason: RUNNING
2024-12-07 16:04:35,184 Sleeping for 9s. Reason: RUNNING
2024-12-07 16:04:44,442 Sleeping for 7s. Reason: RUNNING
2024-12-07 16:04:51,698 Sleeping for 9s. Reason: RUNNING
2024-12-07 16:05:00,958 Sleeping for 5s. Reason: RUNNING
2024-12-07 16:05:09,010 Setting max_seq=508, max_extra_seq=2048
2024-12-07 16:07:30,711 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=87.6 pTM=0.816 ipTM=0.734
2024-12-07 16:07:45,395 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=89.4 pTM=0.878 ipTM=0.858 tol=1.39
2024-12-07 16:08:00,091 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=89.5 pTM=0.875 ipTM=0.85 tol=0.768
2024-12-07 16:08:14,784 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=89.4 pTM=0.869 ipTM=0.842 tol=0.25
2024-12-07 16:08:14,784 alphafold2_multimer_v3_model_1_seed_000 took 180.6s (3 recycles)
2024-12-07 16:08:29,926 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=88.4 pTM=0.857 ipTM=0.814
2024-12-07 16:08:44,718 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=89.3 pTM=0.875 ipTM=0.861 tol=0.892
2024-12-07 16:08:59,489 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=89.4 pTM=0.868 ipTM=0.85 tol=0.644
2024-12-07 16:09:14,276 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=89.4 pTM=0.865 ipTM=0.846 tol=0.277
2024-12-07 16:09:14,277 alphafold2_multimer_v3_model_2_seed_000 took 59.0s (3 recycles)
2024-12-07 16:09:29,532 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=89.1 pTM=0.855 ipTM=0.808
2024-12-07 16:09:44,400 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=90.1 pTM=0.879 ipTM=0.856 tol=1.46
2024-12-07 16:09:59,264 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=89.8 pTM=0.876 ipTM=0.86 tol=0.823
2024-12-07 16:10:14,113 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=89.8 pTM=0.875 ipTM=0.858 tol=0.194
2024-12-07 16:10:14,114 alphafold2_multimer_v3_model_3_seed_000 took 59.4s (3 recycles)
2024-12-07 16:10:29,365 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=88.9 pTM=0.854 ipTM=0.803
2024-12-07 16:10:44,262 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=90.2 pTM=0.887 ipTM=0.869 tol=1.39
2024-12-07 16:10:59,171 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=90.2 pTM=0.883 ipTM=0.863 tol=0.335
2024-12-07 16:10:59,172 alphafold2_multimer_v3_model_4_seed_000 took 44.6s (2 recycles)
2024-12-07 16:11:14,371 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=87.2 pTM=0.814 ipTM=0.755
2024-12-07 16:11:29,209 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=89.4 pTM=0.877 ipTM=0.853 tol=1.58
2024-12-07 16:11:44,043 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=89.6 pTM=0.875 ipTM=0.852 tol=0.382
2024-12-07 16:11:44,044 alphafold2_multimer_v3_model_5_seed_000 took 44.4s (2 recycles)
2024-12-07 16:11:44,488 reranking models by 'multimer' metric
2024-12-07 16:11:47,555 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 16:12:16,130 Relaxation took 31.6s
2024-12-07 16:12:16,130 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=90.2 pTM=0.883 ipTM=0.863
2024-12-07 16:12:43,709 Relaxation took 27.6s
2024-12-07 16:12:43,709 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=89.8 pTM=0.875 ipTM=0.858
2024-12-07 16:13:06,368 Relaxation took 22.7s
2024-12-07 16:13:06,368 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=89.6 pTM=0.875 ipTM=0.852
2024-12-07 16:13:32,235 Relaxation took 25.9s
2024-12-07 16:13:32,236 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=89.4 pTM=0.865 ipTM=0.846
2024-12-07 16:13:55,909 Relaxation took 23.7s
2024-12-07 16:13:55,909 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=89.4 pTM=0.869 ipTM=0.842
2024-12-07 16:13:57,445 Done