2024-12-07 18:40:15,862 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 18:40:16,167 Running on GPU
2024-12-07 18:40:17,147 Found 6 citations for tools or databases
2024-12-07 18:40:17,147 Query 1/1: RBBP7_LIN9 (length 967)
2024-12-07 18:40:17,412 Sleeping for 10s. Reason: PENDING
2024-12-07 18:40:27,677 Sleeping for 5s. Reason: RUNNING
2024-12-07 18:40:32,933 Sleeping for 8s. Reason: RUNNING
2024-12-07 18:40:41,191 Sleeping for 10s. Reason: RUNNING
2024-12-07 18:40:51,452 Sleeping for 9s. Reason: RUNNING
2024-12-07 18:41:01,073 Sleeping for 7s. Reason: RUNNING
2024-12-07 18:41:08,335 Sleeping for 6s. Reason: RUNNING
2024-12-07 18:41:14,590 Sleeping for 6s. Reason: RUNNING
2024-12-07 18:41:20,844 Sleeping for 9s. Reason: RUNNING
2024-12-07 18:41:30,107 Sleeping for 9s. Reason: RUNNING
2024-12-07 18:41:39,362 Sleeping for 9s. Reason: RUNNING
2024-12-07 18:41:48,663 Sleeping for 9s. Reason: RUNNING
2024-12-07 18:41:57,930 Sleeping for 5s. Reason: RUNNING
2024-12-07 18:42:05,409 Sleeping for 10s. Reason: PENDING
2024-12-07 18:42:15,666 Sleeping for 7s. Reason: RUNNING
2024-12-07 18:42:22,925 Sleeping for 6s. Reason: RUNNING
2024-12-07 18:42:29,183 Sleeping for 8s. Reason: RUNNING
2024-12-07 18:42:37,442 Sleeping for 7s. Reason: RUNNING
2024-12-07 18:42:44,705 Sleeping for 8s. Reason: RUNNING
2024-12-07 18:42:52,971 Sleeping for 10s. Reason: RUNNING
2024-12-07 18:43:03,235 Sleeping for 7s. Reason: RUNNING
2024-12-07 18:43:14,149 Setting max_seq=508, max_extra_seq=2048
2024-12-07 18:46:09,564 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=72.8 pTM=0.65 ipTM=0.827
2024-12-07 18:46:29,562 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.6 pTM=0.651 ipTM=0.886 tol=7.05
2024-12-07 18:46:49,634 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.9 pTM=0.654 ipTM=0.894 tol=4.33
2024-12-07 18:47:09,749 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.2 pTM=0.654 ipTM=0.894 tol=1.67
2024-12-07 18:47:29,896 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.4 pTM=0.655 ipTM=0.894 tol=1.93
2024-12-07 18:47:50,059 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.4 pTM=0.655 ipTM=0.893 tol=0.793
2024-12-07 18:48:10,266 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.6 pTM=0.657 ipTM=0.896 tol=0.743
2024-12-07 18:48:30,455 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.6 pTM=0.656 ipTM=0.893 tol=0.667
2024-12-07 18:48:50,668 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.6 pTM=0.655 ipTM=0.893 tol=0.58
2024-12-07 18:49:10,864 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.4 pTM=0.654 ipTM=0.891 tol=1.71
2024-12-07 18:49:31,084 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=75.6 pTM=0.655 ipTM=0.893 tol=1.33
2024-12-07 18:49:51,294 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=75.4 pTM=0.655 ipTM=0.893 tol=0.488
2024-12-07 18:49:51,295 alphafold2_multimer_v3_model_1_seed_000 took 392.0s (11 recycles)
2024-12-07 18:50:12,008 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.8 pTM=0.649 ipTM=0.844
2024-12-07 18:50:32,256 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=75.3 pTM=0.666 ipTM=0.89 tol=6.3
2024-12-07 18:50:52,471 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.2 pTM=0.662 ipTM=0.891 tol=3.76
2024-12-07 18:51:12,692 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=76.1 pTM=0.664 ipTM=0.896 tol=2.93
2024-12-07 18:51:32,907 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.9 pTM=0.661 ipTM=0.891 tol=1.85
2024-12-07 18:51:53,096 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.6 pTM=0.659 ipTM=0.889 tol=1.52
2024-12-07 18:52:13,304 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75.6 pTM=0.66 ipTM=0.89 tol=1.39
2024-12-07 18:52:33,491 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.6 pTM=0.659 ipTM=0.89 tol=0.623
2024-12-07 18:52:53,661 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.7 pTM=0.66 ipTM=0.889 tol=0.462
2024-12-07 18:52:53,663 alphafold2_multimer_v3_model_2_seed_000 took 181.8s (8 recycles)
2024-12-07 18:53:14,484 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.4 pTM=0.634 ipTM=0.853
2024-12-07 18:53:34,796 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.5 pTM=0.653 ipTM=0.897 tol=6.33
2024-12-07 18:53:55,091 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.4 pTM=0.652 ipTM=0.897 tol=3.06
2024-12-07 18:54:15,386 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.7 pTM=0.655 ipTM=0.9 tol=1.87
2024-12-07 18:54:35,672 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76 pTM=0.658 ipTM=0.902 tol=1.33
2024-12-07 18:54:55,957 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76 pTM=0.659 ipTM=0.901 tol=0.789
2024-12-07 18:55:16,230 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.1 pTM=0.658 ipTM=0.903 tol=0.547
2024-12-07 18:55:36,508 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76.1 pTM=0.656 ipTM=0.901 tol=0.84
2024-12-07 18:55:56,782 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.1 pTM=0.656 ipTM=0.901 tol=0.621
2024-12-07 18:56:17,059 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=75.9 pTM=0.655 ipTM=0.901 tol=0.503
2024-12-07 18:56:37,358 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.1 pTM=0.656 ipTM=0.902 tol=0.591
2024-12-07 18:56:57,649 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=75.9 pTM=0.657 ipTM=0.901 tol=0.799
2024-12-07 18:57:17,936 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=75.9 pTM=0.656 ipTM=0.902 tol=0.753
2024-12-07 18:57:38,215 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=75.9 pTM=0.656 ipTM=0.9 tol=0.549
2024-12-07 18:57:58,502 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=76.1 pTM=0.657 ipTM=0.902 tol=0.562
2024-12-07 18:58:18,799 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=76 pTM=0.657 ipTM=0.901 tol=0.396
2024-12-07 18:58:18,800 alphafold2_multimer_v3_model_3_seed_000 took 324.6s (15 recycles)
2024-12-07 18:58:39,639 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.6 pTM=0.634 ipTM=0.849
2024-12-07 18:58:59,906 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.6 pTM=0.643 ipTM=0.895 tol=7.16
2024-12-07 18:59:20,156 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.2 pTM=0.644 ipTM=0.894 tol=5.14
2024-12-07 18:59:40,395 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.6 pTM=0.649 ipTM=0.896 tol=2.79
2024-12-07 19:00:00,637 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.1 pTM=0.656 ipTM=0.895 tol=4.16
2024-12-07 19:00:20,885 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.2 pTM=0.661 ipTM=0.896 tol=3.25
2024-12-07 19:00:41,121 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.2 pTM=0.663 ipTM=0.895 tol=2.52
2024-12-07 19:01:01,348 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.2 pTM=0.662 ipTM=0.896 tol=1.42
2024-12-07 19:01:21,586 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.4 pTM=0.664 ipTM=0.894 tol=2.03
2024-12-07 19:01:41,820 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.2 pTM=0.66 ipTM=0.895 tol=1.79
2024-12-07 19:02:02,062 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.1 pTM=0.657 ipTM=0.896 tol=1.92
2024-12-07 19:02:22,290 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.4 pTM=0.664 ipTM=0.896 tol=1.03
2024-12-07 19:02:42,517 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.2 pTM=0.661 ipTM=0.895 tol=2.44
2024-12-07 19:03:02,755 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75 pTM=0.658 ipTM=0.895 tol=1.84
2024-12-07 19:03:22,981 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.4 pTM=0.664 ipTM=0.895 tol=1.08
2024-12-07 19:03:43,226 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=75.3 pTM=0.662 ipTM=0.896 tol=0.957
2024-12-07 19:04:03,459 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=75.4 pTM=0.661 ipTM=0.897 tol=2.59
2024-12-07 19:04:23,691 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=75.3 pTM=0.658 ipTM=0.898 tol=1.71
2024-12-07 19:04:43,917 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.1 pTM=0.658 ipTM=0.896 tol=2.62
2024-12-07 19:05:04,152 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=75.4 pTM=0.665 ipTM=0.897 tol=2.81
2024-12-07 19:05:24,386 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.1 pTM=0.659 ipTM=0.898 tol=1.93
2024-12-07 19:05:44,612 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=75.2 pTM=0.659 ipTM=0.896 tol=0.813
2024-12-07 19:06:04,851 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=75.4 pTM=0.663 ipTM=0.899 tol=1.94
2024-12-07 19:06:25,058 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=75.4 pTM=0.665 ipTM=0.896 tol=1.77
2024-12-07 19:06:45,264 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=75.2 pTM=0.655 ipTM=0.898 tol=1.06
2024-12-07 19:07:05,474 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=75.2 pTM=0.66 ipTM=0.897 tol=1.6
2024-12-07 19:07:25,686 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=75.2 pTM=0.658 ipTM=0.896 tol=1.47
2024-12-07 19:07:45,875 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=75.1 pTM=0.659 ipTM=0.896 tol=1.69
2024-12-07 19:08:06,078 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.2 pTM=0.661 ipTM=0.897 tol=0.924
2024-12-07 19:08:26,314 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75.5 pTM=0.665 ipTM=0.897 tol=0.848
2024-12-07 19:08:46,525 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=75.3 pTM=0.659 ipTM=0.896 tol=1.31
2024-12-07 19:08:46,526 alphafold2_multimer_v3_model_4_seed_000 took 627.1s (30 recycles)
2024-12-07 19:09:07,366 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=72.1 pTM=0.64 ipTM=0.858
2024-12-07 19:09:27,697 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.3 pTM=0.654 ipTM=0.904 tol=7.36
2024-12-07 19:09:48,022 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.7 pTM=0.655 ipTM=0.9 tol=2.26
2024-12-07 19:10:08,330 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.7 pTM=0.651 ipTM=0.901 tol=1.34
2024-12-07 19:10:28,647 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.1 pTM=0.654 ipTM=0.902 tol=1.61
2024-12-07 19:10:48,959 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.1 pTM=0.652 ipTM=0.901 tol=3
2024-12-07 19:11:09,279 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.2 pTM=0.652 ipTM=0.903 tol=1.57
2024-12-07 19:11:29,583 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.2 pTM=0.652 ipTM=0.903 tol=1.58
2024-12-07 19:11:49,878 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=75.4 pTM=0.652 ipTM=0.901 tol=1.23
2024-12-07 19:12:10,198 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=75.2 pTM=0.651 ipTM=0.902 tol=1.71
2024-12-07 19:12:30,521 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75.4 pTM=0.654 ipTM=0.903 tol=1.15
2024-12-07 19:12:50,850 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=75.3 pTM=0.655 ipTM=0.904 tol=1.04
2024-12-07 19:13:11,161 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=75.1 pTM=0.653 ipTM=0.903 tol=1.04
2024-12-07 19:13:31,472 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=75.1 pTM=0.653 ipTM=0.901 tol=0.437
2024-12-07 19:13:31,473 alphafold2_multimer_v3_model_5_seed_000 took 284.4s (13 recycles)
2024-12-07 19:13:32,049 reranking models by 'multimer' metric
2024-12-07 19:13:35,031 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 19:14:55,240 Relaxation took 83.2s
2024-12-07 19:14:55,241 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76 pTM=0.657 ipTM=0.901
2024-12-07 19:16:14,826 Relaxation took 79.6s
2024-12-07 19:16:14,826 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=75.1 pTM=0.653 ipTM=0.901
2024-12-07 19:17:24,182 Relaxation took 69.4s
2024-12-07 19:17:24,182 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.3 pTM=0.659 ipTM=0.896
2024-12-07 19:17:57,132 Relaxation took 32.9s
2024-12-07 19:17:57,132 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.4 pTM=0.655 ipTM=0.893
2024-12-07 19:18:43,721 Relaxation took 46.6s
2024-12-07 19:18:43,721 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.7 pTM=0.66 ipTM=0.889
2024-12-07 19:18:45,521 Done