2024-12-08 01:33:56,276 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 01:33:56,612 Running on GPU
2024-12-08 01:34:00,041 Found 6 citations for tools or databases
2024-12-08 01:34:00,041 Query 1/1: RNF123_ELAC2 (length 2140)
2024-12-08 01:34:00,333 Sleeping for 7s. Reason: PENDING
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2024-12-08 01:38:48,188 Sleeping for 6s. Reason: RUNNING
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2024-12-08 01:39:00,699 Sleeping for 9s. Reason: RUNNING
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2024-12-08 01:39:33,871 Setting max_seq=508, max_extra_seq=2048
2024-12-08 01:45:05,893 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.4 pTM=0.584 ipTM=0.224
2024-12-08 01:48:14,266 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.2 pTM=0.586 ipTM=0.281 tol=2.93
2024-12-08 01:51:22,660 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.1 pTM=0.588 ipTM=0.286 tol=2.62
2024-12-08 01:54:31,039 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.1 pTM=0.585 ipTM=0.296 tol=1.05
2024-12-08 01:57:39,364 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.2 pTM=0.588 ipTM=0.297 tol=1.07
2024-12-08 02:00:47,763 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.3 pTM=0.586 ipTM=0.289 tol=0.823
2024-12-08 02:03:56,067 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78.3 pTM=0.589 ipTM=0.286 tol=1.31
2024-12-08 02:07:04,371 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=78.2 pTM=0.586 ipTM=0.29 tol=0.821
2024-12-08 02:10:12,603 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=78.3 pTM=0.588 ipTM=0.292 tol=0.924
2024-12-08 02:13:20,907 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=78.4 pTM=0.586 ipTM=0.294 tol=0.857
2024-12-08 02:16:29,228 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=78.4 pTM=0.587 ipTM=0.297 tol=1.05
2024-12-08 02:19:37,542 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=78.4 pTM=0.585 ipTM=0.289 tol=1.35
2024-12-08 02:22:45,919 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=78.4 pTM=0.585 ipTM=0.28 tol=0.882
2024-12-08 02:25:54,291 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=78.3 pTM=0.584 ipTM=0.283 tol=0.959
2024-12-08 02:29:02,664 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=78.4 pTM=0.588 ipTM=0.283 tol=1.42
2024-12-08 02:32:11,052 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=78.4 pTM=0.586 ipTM=0.283 tol=1.27
2024-12-08 02:35:19,405 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=78.5 pTM=0.588 ipTM=0.286 tol=1.79
2024-12-08 02:38:27,772 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=78.4 pTM=0.589 ipTM=0.287 tol=1.68
2024-12-08 02:41:36,122 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=78.4 pTM=0.59 ipTM=0.281 tol=1.16
2024-12-08 02:44:44,455 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=78.5 pTM=0.591 ipTM=0.282 tol=0.901
2024-12-08 02:47:52,753 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=78.4 pTM=0.591 ipTM=0.278 tol=1.07
2024-12-08 02:51:01,027 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=78.3 pTM=0.588 ipTM=0.268 tol=0.791
2024-12-08 02:54:09,335 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=78.3 pTM=0.59 ipTM=0.27 tol=0.801
2024-12-08 02:57:17,698 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=78.4 pTM=0.59 ipTM=0.274 tol=0.429
2024-12-08 02:57:17,700 alphafold2_multimer_v3_model_1_seed_000 took 4659.0s (23 recycles)
2024-12-08 03:00:29,003 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.1 pTM=0.582 ipTM=0.242
2024-12-08 03:03:37,623 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.9 pTM=0.59 ipTM=0.315 tol=6.85
2024-12-08 03:06:46,187 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.2 pTM=0.59 ipTM=0.302 tol=6.49
2024-12-08 03:09:54,674 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.4 pTM=0.593 ipTM=0.288 tol=4.55
2024-12-08 03:13:03,190 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.4 pTM=0.591 ipTM=0.294 tol=2.73
2024-12-08 03:16:11,712 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.4 pTM=0.589 ipTM=0.285 tol=3.36
2024-12-08 03:19:20,255 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.6 pTM=0.589 ipTM=0.274 tol=1.62
2024-12-08 03:22:28,812 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.6 pTM=0.59 ipTM=0.277 tol=1.07
2024-12-08 03:25:37,348 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.7 pTM=0.591 ipTM=0.279 tol=1.67
2024-12-08 03:28:45,943 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.8 pTM=0.59 ipTM=0.286 tol=1.17
2024-12-08 03:31:54,531 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=79 pTM=0.593 ipTM=0.306 tol=1.16
2024-12-08 03:35:03,073 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=79.1 pTM=0.593 ipTM=0.294 tol=0.555
2024-12-08 03:38:11,624 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=79.1 pTM=0.593 ipTM=0.286 tol=0.592
2024-12-08 03:41:20,123 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=79.1 pTM=0.594 ipTM=0.298 tol=0.468
2024-12-08 03:41:20,126 alphafold2_multimer_v3_model_2_seed_000 took 2639.8s (13 recycles)
2024-12-08 03:44:31,215 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.1 pTM=0.582 ipTM=0.236
2024-12-08 03:47:39,807 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.5 pTM=0.579 ipTM=0.247 tol=6.8
2024-12-08 03:50:48,361 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77.7 pTM=0.582 ipTM=0.249 tol=3.49
2024-12-08 03:53:56,797 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=77.5 pTM=0.579 ipTM=0.241 tol=1.63
2024-12-08 03:57:05,252 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=77.7 pTM=0.579 ipTM=0.232 tol=2.26
2024-12-08 04:00:13,689 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.7 pTM=0.579 ipTM=0.231 tol=1.6
2024-12-08 04:03:22,080 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=77.9 pTM=0.58 ipTM=0.235 tol=0.975
2024-12-08 04:06:30,484 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=77.8 pTM=0.58 ipTM=0.236 tol=1.46
2024-12-08 04:09:38,925 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=77.9 pTM=0.581 ipTM=0.232 tol=1.59
2024-12-08 04:12:47,411 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=77.8 pTM=0.58 ipTM=0.232 tol=1.3
2024-12-08 04:15:55,844 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78 pTM=0.579 ipTM=0.233 tol=1.87
2024-12-08 04:19:04,328 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=77.9 pTM=0.579 ipTM=0.235 tol=1.31
2024-12-08 04:22:12,744 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=78 pTM=0.58 ipTM=0.239 tol=3.02
2024-12-08 04:25:21,132 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=77.9 pTM=0.58 ipTM=0.238 tol=1.49
2024-12-08 04:28:29,443 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.1 pTM=0.583 ipTM=0.237 tol=1.02
2024-12-08 04:31:37,724 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.1 pTM=0.583 ipTM=0.237 tol=1.32
2024-12-08 04:34:46,017 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.1 pTM=0.583 ipTM=0.241 tol=0.706
2024-12-08 04:37:54,313 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78 pTM=0.582 ipTM=0.241 tol=0.476
2024-12-08 04:37:54,316 alphafold2_multimer_v3_model_3_seed_000 took 3391.6s (17 recycles)
2024-12-08 04:41:05,473 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.2 pTM=0.582 ipTM=0.248
2024-12-08 04:44:14,038 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.6 pTM=0.592 ipTM=0.295 tol=5.19
2024-12-08 04:47:22,476 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.1 pTM=0.595 ipTM=0.279 tol=6.1
2024-12-08 04:50:30,804 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.2 pTM=0.601 ipTM=0.284 tol=1.71
2024-12-08 04:53:38,979 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.2 pTM=0.624 ipTM=0.352 tol=1.69
2024-12-08 04:56:47,077 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.4 pTM=0.652 ipTM=0.431 tol=0.847
2024-12-08 04:59:55,214 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.6 pTM=0.667 ipTM=0.464 tol=1
2024-12-08 05:03:03,314 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.6 pTM=0.674 ipTM=0.481 tol=0.916
2024-12-08 05:06:11,368 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.8 pTM=0.698 ipTM=0.534 tol=0.991
2024-12-08 05:09:19,419 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.7 pTM=0.701 ipTM=0.549 tol=1.07
2024-12-08 05:12:27,478 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.9 pTM=0.719 ipTM=0.582 tol=1.46
2024-12-08 05:15:35,535 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.8 pTM=0.721 ipTM=0.592 tol=2.44
2024-12-08 05:18:43,629 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.1 pTM=0.731 ipTM=0.614 tol=1.24
2024-12-08 05:21:51,701 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79 pTM=0.735 ipTM=0.623 tol=1.01
2024-12-08 05:24:59,804 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.1 pTM=0.738 ipTM=0.627 tol=0.592
2024-12-08 05:28:07,925 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.2 pTM=0.742 ipTM=0.636 tol=0.591
2024-12-08 05:31:16,017 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.2 pTM=0.744 ipTM=0.642 tol=0.607
2024-12-08 05:34:24,094 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.1 pTM=0.747 ipTM=0.647 tol=0.392
2024-12-08 05:34:24,096 alphafold2_multimer_v3_model_4_seed_000 took 3387.2s (17 recycles)
2024-12-08 05:37:35,188 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.9 pTM=0.57 ipTM=0.225
2024-12-08 05:40:43,755 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.2 pTM=0.574 ipTM=0.242 tol=3.16
2024-12-08 05:43:52,270 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.1 pTM=0.577 ipTM=0.24 tol=3.22
2024-12-08 05:47:00,726 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.4 pTM=0.581 ipTM=0.24 tol=4.97
2024-12-08 05:50:09,159 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.4 pTM=0.581 ipTM=0.249 tol=2.61
2024-12-08 05:53:17,530 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.7 pTM=0.583 ipTM=0.247 tol=1.53
2024-12-08 05:56:25,861 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.8 pTM=0.584 ipTM=0.253 tol=1.33
2024-12-08 05:59:34,218 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=77.8 pTM=0.585 ipTM=0.245 tol=1.2
2024-12-08 06:02:42,563 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.8 pTM=0.585 ipTM=0.247 tol=2.08
2024-12-08 06:05:50,816 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.8 pTM=0.585 ipTM=0.247 tol=2.37
2024-12-08 06:08:59,074 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78 pTM=0.588 ipTM=0.254 tol=1.61
2024-12-08 06:12:07,285 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=77.9 pTM=0.588 ipTM=0.251 tol=1.25
2024-12-08 06:15:15,498 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=77.9 pTM=0.589 ipTM=0.253 tol=1.04
2024-12-08 06:18:23,657 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=77.9 pTM=0.594 ipTM=0.27 tol=1.24
2024-12-08 06:21:31,844 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.9 pTM=0.597 ipTM=0.27 tol=1.04
2024-12-08 06:24:40,034 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78 pTM=0.594 ipTM=0.262 tol=0.612
2024-12-08 06:27:48,282 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=78 pTM=0.59 ipTM=0.258 tol=1.55
2024-12-08 06:30:56,509 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78 pTM=0.589 ipTM=0.259 tol=1.11
2024-12-08 06:34:04,764 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=77.9 pTM=0.587 ipTM=0.257 tol=1.14
2024-12-08 06:37:13,097 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=78 pTM=0.59 ipTM=0.255 tol=0.809
2024-12-08 06:40:21,449 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78 pTM=0.589 ipTM=0.251 tol=0.941
2024-12-08 06:43:29,883 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=77.8 pTM=0.586 ipTM=0.244 tol=1.51
2024-12-08 06:46:38,311 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=77.9 pTM=0.587 ipTM=0.251 tol=1.36
2024-12-08 06:49:46,677 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=77.9 pTM=0.589 ipTM=0.254 tol=1.12
2024-12-08 06:52:55,027 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=77.9 pTM=0.587 ipTM=0.249 tol=0.806
2024-12-08 06:56:03,434 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=78 pTM=0.587 ipTM=0.251 tol=1.07
2024-12-08 06:59:11,777 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=77.8 pTM=0.585 ipTM=0.258 tol=0.923
2024-12-08 07:02:20,175 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=77.8 pTM=0.586 ipTM=0.254 tol=0.886
2024-12-08 07:05:28,494 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=77.9 pTM=0.587 ipTM=0.25 tol=0.881
2024-12-08 07:08:36,739 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=77.8 pTM=0.587 ipTM=0.249 tol=0.669
2024-12-08 07:11:44,946 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=77.8 pTM=0.588 ipTM=0.251 tol=1.48
2024-12-08 07:11:44,948 alphafold2_multimer_v3_model_5_seed_000 took 5838.3s (30 recycles)
2024-12-08 07:11:47,567 reranking models by 'multimer' metric
2024-12-08 07:11:51,273 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 07:17:22,671 Relaxation took 335.1s
2024-12-08 07:17:22,671 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.1 pTM=0.747 ipTM=0.647
2024-12-08 07:20:43,636 Relaxation took 201.0s
2024-12-08 07:20:43,636 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.1 pTM=0.594 ipTM=0.298
2024-12-08 07:23:45,287 Relaxation took 181.6s
2024-12-08 07:23:45,287 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.4 pTM=0.59 ipTM=0.274
2024-12-08 07:25:57,504 Relaxation took 132.2s
2024-12-08 07:25:57,504 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.8 pTM=0.588 ipTM=0.251
2024-12-08 07:35:20,057 Relaxation took 562.6s
2024-12-08 07:35:20,057 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78 pTM=0.582 ipTM=0.241
2024-12-08 07:35:25,973 Done