2024-12-08 01:43:25,116 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 01:43:25,559 Running on GPU
2024-12-08 01:43:29,151 Found 6 citations for tools or databases
2024-12-08 01:43:29,151 Query 1/1: RNF123_UBE2D1 (length 1461)
2024-12-08 01:43:29,459 Sleeping for 8s. Reason: PENDING
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2024-12-08 01:48:40,074 Setting max_seq=508, max_extra_seq=2048
2024-12-08 01:53:14,522 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.9 pTM=0.757 ipTM=0.814
2024-12-08 01:54:12,995 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.9 pTM=0.783 ipTM=0.825 tol=3.36
2024-12-08 01:55:11,629 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=81.2 pTM=0.789 ipTM=0.823 tol=1.13
2024-12-08 01:56:10,320 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.4 pTM=0.789 ipTM=0.819 tol=0.572
2024-12-08 01:57:09,006 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.2 pTM=0.785 ipTM=0.81 tol=0.729
2024-12-08 01:58:07,677 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.1 pTM=0.785 ipTM=0.79 tol=0.783
2024-12-08 01:59:06,471 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.9 pTM=0.78 ipTM=0.792 tol=0.234
2024-12-08 01:59:06,473 alphafold2_multimer_v3_model_1_seed_000 took 619.7s (6 recycles)
2024-12-08 02:00:06,880 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.7 pTM=0.755 ipTM=0.846
2024-12-08 02:01:05,691 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.4 pTM=0.763 ipTM=0.841 tol=2.47
2024-12-08 02:02:04,509 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81 pTM=0.768 ipTM=0.826 tol=1.03
2024-12-08 02:03:03,318 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.1 pTM=0.767 ipTM=0.798 tol=3.87
2024-12-08 02:04:02,211 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.1 pTM=0.766 ipTM=0.797 tol=2.5
2024-12-08 02:05:01,164 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.1 pTM=0.771 ipTM=0.783 tol=2.57
2024-12-08 02:06:00,030 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.4 pTM=0.772 ipTM=0.787 tol=1.39
2024-12-08 02:06:58,878 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.4 pTM=0.775 ipTM=0.787 tol=0.628
2024-12-08 02:07:57,756 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.6 pTM=0.776 ipTM=0.794 tol=0.453
2024-12-08 02:07:57,758 alphafold2_multimer_v3_model_2_seed_000 took 529.7s (8 recycles)
2024-12-08 02:08:58,102 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.2 pTM=0.737 ipTM=0.779
2024-12-08 02:09:56,845 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.6 pTM=0.763 ipTM=0.821 tol=2.54
2024-12-08 02:10:55,609 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.9 pTM=0.765 ipTM=0.784 tol=2.03
2024-12-08 02:11:54,337 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.6 pTM=0.759 ipTM=0.759 tol=0.57
2024-12-08 02:12:53,050 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.4 pTM=0.754 ipTM=0.742 tol=0.689
2024-12-08 02:13:51,778 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.4 pTM=0.755 ipTM=0.728 tol=0.604
2024-12-08 02:14:50,552 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.4 pTM=0.755 ipTM=0.72 tol=0.428
2024-12-08 02:14:50,553 alphafold2_multimer_v3_model_3_seed_000 took 411.2s (6 recycles)
2024-12-08 02:15:50,978 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.4 pTM=0.752 ipTM=0.842
2024-12-08 02:16:49,847 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.1 pTM=0.784 ipTM=0.864 tol=1.66
2024-12-08 02:17:48,739 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=81.8 pTM=0.795 ipTM=0.859 tol=2.21
2024-12-08 02:18:47,564 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=81.9 pTM=0.797 ipTM=0.853 tol=1.23
2024-12-08 02:19:46,384 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82 pTM=0.803 ipTM=0.857 tol=0.456
2024-12-08 02:19:46,385 alphafold2_multimer_v3_model_4_seed_000 took 294.2s (4 recycles)
2024-12-08 02:20:46,750 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.4 pTM=0.734 ipTM=0.742
2024-12-08 02:21:45,562 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=80.2 pTM=0.761 ipTM=0.824 tol=5.03
2024-12-08 02:22:44,409 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=80.5 pTM=0.762 ipTM=0.806 tol=2.73
2024-12-08 02:23:43,219 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.4 pTM=0.762 ipTM=0.781 tol=1.16
2024-12-08 02:24:42,011 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.5 pTM=0.759 ipTM=0.781 tol=1.61
2024-12-08 02:25:40,820 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.4 pTM=0.762 ipTM=0.767 tol=1.7
2024-12-08 02:26:39,631 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.5 pTM=0.763 ipTM=0.761 tol=0.744
2024-12-08 02:27:38,457 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.5 pTM=0.762 ipTM=0.758 tol=1.44
2024-12-08 02:28:37,276 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.5 pTM=0.762 ipTM=0.77 tol=1.09
2024-12-08 02:29:36,116 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.5 pTM=0.761 ipTM=0.777 tol=1.06
2024-12-08 02:30:34,937 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.4 pTM=0.76 ipTM=0.772 tol=1.82
2024-12-08 02:31:33,732 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.5 pTM=0.761 ipTM=0.765 tol=1.38
2024-12-08 02:32:32,522 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.4 pTM=0.761 ipTM=0.771 tol=0.534
2024-12-08 02:33:31,321 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80.4 pTM=0.762 ipTM=0.773 tol=0.996
2024-12-08 02:34:30,127 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.5 pTM=0.762 ipTM=0.771 tol=1.46
2024-12-08 02:35:28,939 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.4 pTM=0.762 ipTM=0.763 tol=2.21
2024-12-08 02:36:27,745 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=80.3 pTM=0.761 ipTM=0.757 tol=1.6
2024-12-08 02:37:26,560 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80.3 pTM=0.759 ipTM=0.76 tol=1.26
2024-12-08 02:38:25,440 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=80.2 pTM=0.759 ipTM=0.753 tol=0.554
2024-12-08 02:39:24,254 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=80.1 pTM=0.759 ipTM=0.753 tol=0.927
2024-12-08 02:40:23,088 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80.1 pTM=0.758 ipTM=0.752 tol=1
2024-12-08 02:41:21,920 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80.3 pTM=0.76 ipTM=0.759 tol=1.26
2024-12-08 02:42:20,710 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=80.1 pTM=0.758 ipTM=0.757 tol=0.756
2024-12-08 02:43:19,515 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=80.2 pTM=0.759 ipTM=0.771 tol=1.98
2024-12-08 02:44:18,306 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=80.3 pTM=0.76 ipTM=0.769 tol=1.61
2024-12-08 02:45:17,091 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=80.2 pTM=0.758 ipTM=0.766 tol=0.773
2024-12-08 02:46:15,879 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=80.2 pTM=0.759 ipTM=0.765 tol=1.06
2024-12-08 02:47:14,669 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=80.1 pTM=0.757 ipTM=0.764 tol=4.79
2024-12-08 02:48:13,445 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=80.1 pTM=0.759 ipTM=0.759 tol=2.15
2024-12-08 02:49:12,252 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=80.3 pTM=0.762 ipTM=0.759 tol=1.41
2024-12-08 02:50:11,012 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=79.9 pTM=0.756 ipTM=0.756 tol=1.38
2024-12-08 02:50:11,013 alphafold2_multimer_v3_model_5_seed_000 took 1823.0s (30 recycles)
2024-12-08 02:50:12,618 reranking models by 'multimer' metric
2024-12-08 02:50:16,274 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 02:51:47,826 Relaxation took 95.2s
2024-12-08 02:51:47,826 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82 pTM=0.803 ipTM=0.857
2024-12-08 02:53:48,116 Relaxation took 120.3s
2024-12-08 02:53:48,117 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.6 pTM=0.776 ipTM=0.794
2024-12-08 02:55:00,783 Relaxation took 72.7s
2024-12-08 02:55:00,783 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.9 pTM=0.78 ipTM=0.792
2024-12-08 02:57:46,255 Relaxation took 165.5s
2024-12-08 02:57:46,255 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.9 pTM=0.756 ipTM=0.756
2024-12-08 02:59:22,374 Relaxation took 96.1s
2024-12-08 02:59:22,374 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.4 pTM=0.755 ipTM=0.72
2024-12-08 02:59:26,044 Done