2024-12-08 03:22:32,956 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 03:22:33,309 Running on GPU
2024-12-08 03:22:36,995 Found 6 citations for tools or databases
2024-12-08 03:22:36,995 Query 1/1: RNF13_VTI1B (length 613)
2024-12-08 03:22:37,282 Sleeping for 7s. Reason: PENDING
2024-12-08 03:22:44,541 Sleeping for 9s. Reason: RUNNING
2024-12-08 03:22:53,802 Sleeping for 9s. Reason: RUNNING
2024-12-08 03:23:03,068 Sleeping for 5s. Reason: RUNNING
2024-12-08 03:23:08,323 Sleeping for 9s. Reason: RUNNING
2024-12-08 03:23:17,585 Sleeping for 9s. Reason: RUNNING
2024-12-08 03:23:26,846 Sleeping for 9s. Reason: RUNNING
2024-12-08 03:23:36,104 Sleeping for 10s. Reason: RUNNING
2024-12-08 03:23:47,351 Sleeping for 9s. Reason: PENDING
2024-12-08 03:23:56,604 Sleeping for 7s. Reason: RUNNING
2024-12-08 03:24:03,868 Sleeping for 9s. Reason: RUNNING
2024-12-08 03:24:13,129 Sleeping for 6s. Reason: RUNNING
2024-12-08 03:24:19,381 Sleeping for 8s. Reason: RUNNING
2024-12-08 03:24:31,029 Setting max_seq=508, max_extra_seq=2048
2024-12-08 03:28:12,664 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=64.8 pTM=0.329 ipTM=0.152
2024-12-08 03:28:23,200 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.2 pTM=0.334 ipTM=0.145 tol=7.41
2024-12-08 03:28:33,718 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=64.4 pTM=0.327 ipTM=0.138 tol=34.8
2024-12-08 03:28:44,246 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=64.9 pTM=0.327 ipTM=0.148 tol=6.41
2024-12-08 03:28:54,757 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=64.9 pTM=0.328 ipTM=0.156 tol=2.57
2024-12-08 03:29:05,276 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=65.1 pTM=0.332 ipTM=0.164 tol=1.7
2024-12-08 03:29:15,795 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=65.2 pTM=0.334 ipTM=0.169 tol=1.58
2024-12-08 03:29:26,321 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=65.7 pTM=0.334 ipTM=0.176 tol=1.19
2024-12-08 03:29:36,860 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=65.1 pTM=0.334 ipTM=0.175 tol=1.18
2024-12-08 03:29:47,405 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65.7 pTM=0.333 ipTM=0.18 tol=2.06
2024-12-08 03:29:57,942 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=65.2 pTM=0.334 ipTM=0.177 tol=0.698
2024-12-08 03:30:08,479 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=65.5 pTM=0.333 ipTM=0.179 tol=1.37
2024-12-08 03:30:19,015 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.4 pTM=0.335 ipTM=0.181 tol=0.592
2024-12-08 03:30:29,553 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.5 pTM=0.334 ipTM=0.182 tol=1.06
2024-12-08 03:30:40,089 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=65.8 pTM=0.333 ipTM=0.182 tol=1.77
2024-12-08 03:30:50,636 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.6 pTM=0.334 ipTM=0.18 tol=1.44
2024-12-08 03:31:01,182 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.8 pTM=0.334 ipTM=0.184 tol=1.11
2024-12-08 03:31:11,712 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.6 pTM=0.335 ipTM=0.184 tol=1.02
2024-12-08 03:31:22,243 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=65.8 pTM=0.334 ipTM=0.182 tol=0.705
2024-12-08 03:31:32,780 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=65.6 pTM=0.336 ipTM=0.185 tol=0.66
2024-12-08 03:31:43,325 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=65.6 pTM=0.337 ipTM=0.185 tol=1.16
2024-12-08 03:31:53,868 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=65.8 pTM=0.336 ipTM=0.186 tol=0.622
2024-12-08 03:32:04,403 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=65.8 pTM=0.336 ipTM=0.183 tol=0.731
2024-12-08 03:32:14,936 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=65.6 pTM=0.337 ipTM=0.185 tol=1.23
2024-12-08 03:32:25,493 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=65.9 pTM=0.335 ipTM=0.182 tol=1.51
2024-12-08 03:32:36,027 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=65.8 pTM=0.337 ipTM=0.188 tol=0.826
2024-12-08 03:32:46,556 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65.6 pTM=0.337 ipTM=0.188 tol=0.762
2024-12-08 03:32:57,113 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=65.7 pTM=0.336 ipTM=0.189 tol=1.09
2024-12-08 03:33:07,676 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=65.8 pTM=0.338 ipTM=0.184 tol=1.23
2024-12-08 03:33:18,207 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=65.6 pTM=0.336 ipTM=0.185 tol=0.832
2024-12-08 03:33:28,746 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=65.9 pTM=0.336 ipTM=0.186 tol=0.66
2024-12-08 03:33:28,747 alphafold2_multimer_v3_model_1_seed_000 took 531.0s (30 recycles)
2024-12-08 03:33:39,626 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=62.8 pTM=0.324 ipTM=0.173
2024-12-08 03:33:50,178 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=64.1 pTM=0.329 ipTM=0.225 tol=11.5
2024-12-08 03:34:00,738 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=64.6 pTM=0.329 ipTM=0.227 tol=4.36
2024-12-08 03:34:11,294 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=64.9 pTM=0.328 ipTM=0.224 tol=2.69
2024-12-08 03:34:21,851 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=64.8 pTM=0.33 ipTM=0.229 tol=1.52
2024-12-08 03:34:32,403 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=64.7 pTM=0.332 ipTM=0.232 tol=1.28
2024-12-08 03:34:42,967 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=64.8 pTM=0.335 ipTM=0.229 tol=1.12
2024-12-08 03:34:53,530 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=65.6 pTM=0.339 ipTM=0.241 tol=1.17
2024-12-08 03:35:04,090 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=65.2 pTM=0.34 ipTM=0.244 tol=1.13
2024-12-08 03:35:14,647 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=65.9 pTM=0.342 ipTM=0.252 tol=2.18
2024-12-08 03:35:25,216 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=65.2 pTM=0.345 ipTM=0.253 tol=1.01
2024-12-08 03:35:35,780 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=65.9 pTM=0.347 ipTM=0.264 tol=1.04
2024-12-08 03:35:46,355 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=65.9 pTM=0.35 ipTM=0.27 tol=1.12
2024-12-08 03:35:56,912 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=65.9 pTM=0.347 ipTM=0.27 tol=1.03
2024-12-08 03:36:07,466 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=66.1 pTM=0.346 ipTM=0.269 tol=0.796
2024-12-08 03:36:18,026 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=65.9 pTM=0.348 ipTM=0.269 tol=0.813
2024-12-08 03:36:28,582 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=66.1 pTM=0.348 ipTM=0.271 tol=0.568
2024-12-08 03:36:39,126 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=65.8 pTM=0.349 ipTM=0.268 tol=0.957
2024-12-08 03:36:49,673 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=65.9 pTM=0.347 ipTM=0.263 tol=1.08
2024-12-08 03:37:00,233 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=65.8 pTM=0.348 ipTM=0.262 tol=0.908
2024-12-08 03:37:10,789 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=65.8 pTM=0.348 ipTM=0.268 tol=1.35
2024-12-08 03:37:21,336 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=65.8 pTM=0.346 ipTM=0.263 tol=0.87
2024-12-08 03:37:31,891 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=65.7 pTM=0.345 ipTM=0.26 tol=0.786
2024-12-08 03:37:42,450 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=65.5 pTM=0.346 ipTM=0.261 tol=1.1
2024-12-08 03:37:53,025 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=65.5 pTM=0.344 ipTM=0.259 tol=0.887
2024-12-08 03:38:03,575 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=65.7 pTM=0.346 ipTM=0.264 tol=0.926
2024-12-08 03:38:14,124 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=65.6 pTM=0.347 ipTM=0.263 tol=1.01
2024-12-08 03:38:24,699 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=65.8 pTM=0.346 ipTM=0.263 tol=0.85
2024-12-08 03:38:35,261 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=65.7 pTM=0.346 ipTM=0.257 tol=0.815
2024-12-08 03:38:45,809 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=65.5 pTM=0.345 ipTM=0.255 tol=0.657
2024-12-08 03:38:56,363 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=65.8 pTM=0.345 ipTM=0.259 tol=0.666
2024-12-08 03:38:56,363 alphafold2_multimer_v3_model_2_seed_000 took 327.3s (30 recycles)
2024-12-08 03:39:07,254 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=65.4 pTM=0.343 ipTM=0.211
2024-12-08 03:39:17,829 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.4 pTM=0.356 ipTM=0.241 tol=7.79
2024-12-08 03:39:28,405 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=67.2 pTM=0.365 ipTM=0.256 tol=1.81
2024-12-08 03:39:38,966 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67.4 pTM=0.366 ipTM=0.255 tol=1.67
2024-12-08 03:39:49,539 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=67.1 pTM=0.364 ipTM=0.253 tol=0.797
2024-12-08 03:40:00,119 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.2 pTM=0.364 ipTM=0.256 tol=1.32
2024-12-08 03:40:10,698 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.4 pTM=0.367 ipTM=0.257 tol=1.38
2024-12-08 03:40:21,275 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.8 pTM=0.366 ipTM=0.265 tol=0.935
2024-12-08 03:40:31,844 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.2 pTM=0.365 ipTM=0.258 tol=1.17
2024-12-08 03:40:42,435 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=67.7 pTM=0.365 ipTM=0.272 tol=0.829
2024-12-08 03:40:53,008 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=67 pTM=0.366 ipTM=0.262 tol=0.679
2024-12-08 03:41:03,577 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=67.6 pTM=0.365 ipTM=0.261 tol=0.706
2024-12-08 03:41:14,145 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.4 pTM=0.366 ipTM=0.27 tol=0.711
2024-12-08 03:41:24,732 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=67.4 pTM=0.364 ipTM=0.262 tol=0.726
2024-12-08 03:41:35,313 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=67.7 pTM=0.365 ipTM=0.267 tol=0.863
2024-12-08 03:41:45,897 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=67.6 pTM=0.366 ipTM=0.265 tol=0.556
2024-12-08 03:41:56,461 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=67.8 pTM=0.368 ipTM=0.275 tol=0.678
2024-12-08 03:42:07,039 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67.5 pTM=0.367 ipTM=0.264 tol=1.11
2024-12-08 03:42:17,620 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=67.5 pTM=0.365 ipTM=0.262 tol=1.13
2024-12-08 03:42:28,181 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=67.6 pTM=0.366 ipTM=0.264 tol=1.02
2024-12-08 03:42:38,758 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=67.4 pTM=0.367 ipTM=0.27 tol=1.17
2024-12-08 03:42:49,323 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=67.6 pTM=0.366 ipTM=0.268 tol=1.03
2024-12-08 03:42:59,891 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=67.5 pTM=0.365 ipTM=0.267 tol=1
2024-12-08 03:43:10,461 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=67.4 pTM=0.366 ipTM=0.263 tol=1.12
2024-12-08 03:43:21,017 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=67.6 pTM=0.365 ipTM=0.272 tol=0.773
2024-12-08 03:43:31,589 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67.8 pTM=0.367 ipTM=0.273 tol=0.793
2024-12-08 03:43:42,195 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.4 pTM=0.365 ipTM=0.265 tol=0.994
2024-12-08 03:43:52,751 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=67.8 pTM=0.365 ipTM=0.268 tol=1.05
2024-12-08 03:44:03,331 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=67.7 pTM=0.366 ipTM=0.269 tol=1.3
2024-12-08 03:44:13,899 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67.6 pTM=0.365 ipTM=0.265 tol=0.805
2024-12-08 03:44:24,488 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=67.9 pTM=0.365 ipTM=0.265 tol=0.813
2024-12-08 03:44:24,489 alphafold2_multimer_v3_model_3_seed_000 took 327.8s (30 recycles)
2024-12-08 03:44:35,394 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=61.2 pTM=0.331 ipTM=0.199
2024-12-08 03:44:45,962 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=62.5 pTM=0.345 ipTM=0.247 tol=11.8
2024-12-08 03:44:56,545 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=62.7 pTM=0.348 ipTM=0.249 tol=3.2
2024-12-08 03:45:07,143 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=62.7 pTM=0.348 ipTM=0.251 tol=4
2024-12-08 03:45:17,736 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=62.6 pTM=0.35 ipTM=0.257 tol=7.56
2024-12-08 03:45:28,320 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=62.5 pTM=0.352 ipTM=0.253 tol=8.22
2024-12-08 03:45:38,896 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=62.8 pTM=0.354 ipTM=0.253 tol=3.39
2024-12-08 03:45:49,487 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=63.2 pTM=0.356 ipTM=0.254 tol=4.08
2024-12-08 03:46:00,066 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=62.9 pTM=0.356 ipTM=0.251 tol=3.03
2024-12-08 03:46:10,632 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=63.2 pTM=0.355 ipTM=0.251 tol=2.96
2024-12-08 03:46:21,204 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=63.1 pTM=0.357 ipTM=0.251 tol=2.93
2024-12-08 03:46:31,778 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=63.3 pTM=0.357 ipTM=0.247 tol=5.53
2024-12-08 03:46:42,355 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=63.3 pTM=0.363 ipTM=0.254 tol=2.94
2024-12-08 03:46:52,953 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=63.1 pTM=0.357 ipTM=0.247 tol=1.6
2024-12-08 03:47:03,529 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=63.4 pTM=0.357 ipTM=0.251 tol=1.93
2024-12-08 03:47:14,122 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=62.8 pTM=0.357 ipTM=0.246 tol=3.82
2024-12-08 03:47:24,699 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=63 pTM=0.359 ipTM=0.247 tol=7.31
2024-12-08 03:47:35,266 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=63 pTM=0.359 ipTM=0.245 tol=4.07
2024-12-08 03:47:45,839 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=62.8 pTM=0.359 ipTM=0.248 tol=6.3
2024-12-08 03:47:56,412 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=63.1 pTM=0.36 ipTM=0.244 tol=5.34
2024-12-08 03:48:06,987 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=62.7 pTM=0.359 ipTM=0.243 tol=3.09
2024-12-08 03:48:17,551 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=63.2 pTM=0.362 ipTM=0.251 tol=6.1
2024-12-08 03:48:28,116 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=62.8 pTM=0.357 ipTM=0.243 tol=4.67
2024-12-08 03:48:38,684 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=63.1 pTM=0.359 ipTM=0.24 tol=2.85
2024-12-08 03:48:49,242 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=62.4 pTM=0.359 ipTM=0.243 tol=5.8
2024-12-08 03:48:59,827 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=63.2 pTM=0.36 ipTM=0.251 tol=6.27
2024-12-08 03:49:10,389 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=63 pTM=0.358 ipTM=0.25 tol=3.85
2024-12-08 03:49:20,950 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=62.9 pTM=0.357 ipTM=0.247 tol=2.5
2024-12-08 03:49:31,519 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=63.2 pTM=0.36 ipTM=0.244 tol=3.98
2024-12-08 03:49:42,095 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=62.5 pTM=0.359 ipTM=0.247 tol=5.89
2024-12-08 03:49:52,662 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=63.2 pTM=0.359 ipTM=0.25 tol=4.44
2024-12-08 03:49:52,662 alphafold2_multimer_v3_model_4_seed_000 took 327.9s (30 recycles)
2024-12-08 03:50:03,573 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=63 pTM=0.334 ipTM=0.218
2024-12-08 03:50:14,152 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=63.7 pTM=0.341 ipTM=0.252 tol=17.7
2024-12-08 03:50:24,723 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=64.2 pTM=0.347 ipTM=0.262 tol=6.07
2024-12-08 03:50:35,310 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=64.9 pTM=0.35 ipTM=0.267 tol=3.66
2024-12-08 03:50:45,872 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65 pTM=0.351 ipTM=0.27 tol=1.8
2024-12-08 03:50:56,435 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=65 pTM=0.351 ipTM=0.268 tol=1.58
2024-12-08 03:51:07,021 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=65 pTM=0.353 ipTM=0.269 tol=2.35
2024-12-08 03:51:17,584 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=65.8 pTM=0.357 ipTM=0.281 tol=1.71
2024-12-08 03:51:28,147 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=65.2 pTM=0.355 ipTM=0.273 tol=0.948
2024-12-08 03:51:38,712 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=65.8 pTM=0.356 ipTM=0.282 tol=2.35
2024-12-08 03:51:49,269 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=65.1 pTM=0.355 ipTM=0.273 tol=1.98
2024-12-08 03:51:59,827 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=65.6 pTM=0.356 ipTM=0.276 tol=1.8
2024-12-08 03:52:10,388 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=65.3 pTM=0.355 ipTM=0.274 tol=2.86
2024-12-08 03:52:20,945 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=65.3 pTM=0.355 ipTM=0.271 tol=0.844
2024-12-08 03:52:31,504 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=65.4 pTM=0.355 ipTM=0.281 tol=2.36
2024-12-08 03:52:42,044 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=65.2 pTM=0.357 ipTM=0.271 tol=2.4
2024-12-08 03:52:52,582 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=65.6 pTM=0.359 ipTM=0.277 tol=1.29
2024-12-08 03:53:03,117 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=65.3 pTM=0.358 ipTM=0.274 tol=0.798
2024-12-08 03:53:13,657 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=65.5 pTM=0.357 ipTM=0.274 tol=0.932
2024-12-08 03:53:24,202 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=65.4 pTM=0.357 ipTM=0.272 tol=1.06
2024-12-08 03:53:34,744 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=65.6 pTM=0.359 ipTM=0.28 tol=0.973
2024-12-08 03:53:45,283 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=65.8 pTM=0.359 ipTM=0.281 tol=1.08
2024-12-08 03:53:55,835 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=65.6 pTM=0.357 ipTM=0.276 tol=1.59
2024-12-08 03:54:06,378 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=65.2 pTM=0.357 ipTM=0.272 tol=1.77
2024-12-08 03:54:16,929 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=65.4 pTM=0.358 ipTM=0.279 tol=1.92
2024-12-08 03:54:27,488 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=65.6 pTM=0.357 ipTM=0.279 tol=1.71
2024-12-08 03:54:38,047 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=65.6 pTM=0.356 ipTM=0.277 tol=1.35
2024-12-08 03:54:48,605 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=65.9 pTM=0.357 ipTM=0.279 tol=1.43
2024-12-08 03:54:59,163 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.9 pTM=0.358 ipTM=0.281 tol=1.51
2024-12-08 03:55:09,717 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=65.8 pTM=0.359 ipTM=0.281 tol=0.867
2024-12-08 03:55:20,274 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.9 pTM=0.358 ipTM=0.28 tol=1.08
2024-12-08 03:55:20,275 alphafold2_multimer_v3_model_5_seed_000 took 327.3s (30 recycles)
2024-12-08 03:55:20,595 reranking models by 'multimer' metric
2024-12-08 03:55:23,347 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 03:55:56,837 Relaxation took 36.2s
2024-12-08 03:55:56,837 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.9 pTM=0.358 ipTM=0.28
2024-12-08 03:56:35,002 Relaxation took 38.2s
2024-12-08 03:56:35,002 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=67.9 pTM=0.365 ipTM=0.265
2024-12-08 03:57:14,767 Relaxation took 39.8s
2024-12-08 03:57:14,767 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=65.8 pTM=0.345 ipTM=0.259
2024-12-08 03:58:01,750 Relaxation took 47.0s
2024-12-08 03:58:01,750 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=63.2 pTM=0.359 ipTM=0.25
2024-12-08 03:58:39,355 Relaxation took 37.6s
2024-12-08 03:58:39,355 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=65.9 pTM=0.336 ipTM=0.186
2024-12-08 03:58:40,697 Done