2024-12-08 06:16:50,562 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 06:16:50,863 Running on GPU
2024-12-08 06:16:53,624 Found 6 citations for tools or databases
2024-12-08 06:16:53,624 Query 1/1: RNF181_ADCY2 (length 1244)
2024-12-08 06:16:53,899 Sleeping for 8s. Reason: PENDING
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2024-12-08 06:20:39,340 Sleeping for 7s. Reason: PENDING
2024-12-08 06:20:46,597 Sleeping for 10s. Reason: RUNNING
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2024-12-08 06:21:14,395 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:21:21,647 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:21:29,908 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:21:35,165 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:21:44,424 Sleeping for 5s. Reason: RUNNING
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2024-12-08 06:22:45,519 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:22:56,968 Setting max_seq=508, max_extra_seq=2048
2024-12-08 06:25:42,869 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.8 pTM=0.631 ipTM=0.175
2024-12-08 06:26:20,608 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75 pTM=0.662 ipTM=0.307 tol=7.78
2024-12-08 06:26:58,504 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.8 pTM=0.673 ipTM=0.311 tol=2.93
2024-12-08 06:27:36,503 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.9 pTM=0.675 ipTM=0.314 tol=1.62
2024-12-08 06:28:14,551 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.1 pTM=0.672 ipTM=0.323 tol=0.697
2024-12-08 06:28:52,603 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75 pTM=0.673 ipTM=0.315 tol=0.473
2024-12-08 06:28:52,604 alphafold2_multimer_v3_model_1_seed_000 took 350.7s (5 recycles)
2024-12-08 06:29:31,594 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.1 pTM=0.634 ipTM=0.294
2024-12-08 06:30:09,675 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.6 pTM=0.63 ipTM=0.273 tol=3.25
2024-12-08 06:30:47,811 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74 pTM=0.647 ipTM=0.242 tol=2.09
2024-12-08 06:31:25,971 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74.8 pTM=0.65 ipTM=0.344 tol=2.38
2024-12-08 06:32:04,145 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.9 pTM=0.652 ipTM=0.28 tol=1.32
2024-12-08 06:32:42,295 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.5 pTM=0.643 ipTM=0.271 tol=1.25
2024-12-08 06:33:20,422 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75.1 pTM=0.65 ipTM=0.307 tol=1.79
2024-12-08 06:33:58,538 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.8 pTM=0.647 ipTM=0.309 tol=0.667
2024-12-08 06:34:36,651 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=74.6 pTM=0.648 ipTM=0.291 tol=0.431
2024-12-08 06:34:36,652 alphafold2_multimer_v3_model_2_seed_000 took 343.1s (8 recycles)
2024-12-08 06:35:15,675 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.8 pTM=0.624 ipTM=0.204
2024-12-08 06:35:53,768 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=73 pTM=0.621 ipTM=0.216 tol=11.1
2024-12-08 06:36:31,919 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.2 pTM=0.636 ipTM=0.218 tol=2.51
2024-12-08 06:37:10,065 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.4 pTM=0.639 ipTM=0.249 tol=1.67
2024-12-08 06:37:48,192 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.8 pTM=0.643 ipTM=0.222 tol=6.2
2024-12-08 06:38:26,321 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.2 pTM=0.637 ipTM=0.242 tol=3.65
2024-12-08 06:39:04,441 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73.3 pTM=0.636 ipTM=0.235 tol=0.738
2024-12-08 06:39:42,598 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73.5 pTM=0.637 ipTM=0.248 tol=2.67
2024-12-08 06:40:20,767 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.8 pTM=0.638 ipTM=0.246 tol=5.7
2024-12-08 06:40:58,937 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.4 pTM=0.64 ipTM=0.256 tol=2.09
2024-12-08 06:41:37,131 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=73.1 pTM=0.635 ipTM=0.228 tol=3.16
2024-12-08 06:42:15,341 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=73.4 pTM=0.638 ipTM=0.251 tol=2.38
2024-12-08 06:42:53,566 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.1 pTM=0.64 ipTM=0.25 tol=0.839
2024-12-08 06:43:31,794 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=72.9 pTM=0.641 ipTM=0.261 tol=3.06
2024-12-08 06:44:10,033 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=73.2 pTM=0.631 ipTM=0.248 tol=2.9
2024-12-08 06:44:48,238 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.4 pTM=0.641 ipTM=0.289 tol=2.35
2024-12-08 06:45:26,420 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.5 pTM=0.645 ipTM=0.275 tol=1.06
2024-12-08 06:46:04,590 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.1 pTM=0.635 ipTM=0.267 tol=1.98
2024-12-08 06:46:42,789 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.2 pTM=0.64 ipTM=0.29 tol=2.62
2024-12-08 06:47:20,959 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=73.1 pTM=0.638 ipTM=0.27 tol=1.9
2024-12-08 06:47:59,128 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=73 pTM=0.628 ipTM=0.25 tol=2.71
2024-12-08 06:48:37,289 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=73.2 pTM=0.636 ipTM=0.275 tol=3.39
2024-12-08 06:49:15,447 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=73.2 pTM=0.643 ipTM=0.291 tol=1.33
2024-12-08 06:49:53,592 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=73 pTM=0.631 ipTM=0.246 tol=2.8
2024-12-08 06:50:31,753 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73.2 pTM=0.636 ipTM=0.275 tol=2.49
2024-12-08 06:51:09,891 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.9 pTM=0.639 ipTM=0.296 tol=1.01
2024-12-08 06:51:48,063 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=72.9 pTM=0.627 ipTM=0.248 tol=2.76
2024-12-08 06:52:26,212 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=73 pTM=0.634 ipTM=0.271 tol=2.37
2024-12-08 06:53:04,369 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=72.8 pTM=0.626 ipTM=0.265 tol=1.48
2024-12-08 06:53:42,527 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=73.1 pTM=0.632 ipTM=0.281 tol=1.77
2024-12-08 06:54:20,698 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=72.9 pTM=0.635 ipTM=0.277 tol=1.38
2024-12-08 06:54:20,699 alphafold2_multimer_v3_model_3_seed_000 took 1183.1s (30 recycles)
2024-12-08 06:54:59,820 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71.2 pTM=0.609 ipTM=0.178
2024-12-08 06:55:37,983 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=72.7 pTM=0.628 ipTM=0.236 tol=6.41
2024-12-08 06:56:16,121 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.9 pTM=0.621 ipTM=0.224 tol=2.44
2024-12-08 06:56:54,276 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=71.8 pTM=0.618 ipTM=0.256 tol=2.36
2024-12-08 06:57:32,435 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.8 pTM=0.611 ipTM=0.247 tol=1.82
2024-12-08 06:58:10,568 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.9 pTM=0.613 ipTM=0.251 tol=1.8
2024-12-08 06:58:48,702 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.7 pTM=0.606 ipTM=0.225 tol=3.16
2024-12-08 06:59:26,826 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=72 pTM=0.612 ipTM=0.238 tol=3.06
2024-12-08 07:00:04,938 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.6 pTM=0.608 ipTM=0.251 tol=0.857
2024-12-08 07:00:43,058 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=71.9 pTM=0.612 ipTM=0.247 tol=1.12
2024-12-08 07:01:21,183 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=71.6 pTM=0.606 ipTM=0.222 tol=3.14
2024-12-08 07:01:59,277 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=71.7 pTM=0.611 ipTM=0.241 tol=2.86
2024-12-08 07:02:37,368 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=71.7 pTM=0.613 ipTM=0.244 tol=1.29
2024-12-08 07:03:15,461 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=72.1 pTM=0.618 ipTM=0.248 tol=1.35
2024-12-08 07:03:53,558 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=71.4 pTM=0.603 ipTM=0.225 tol=2.94
2024-12-08 07:04:31,659 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=71.8 pTM=0.61 ipTM=0.236 tol=2.77
2024-12-08 07:05:09,790 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=71.9 pTM=0.61 ipTM=0.244 tol=1.51
2024-12-08 07:05:47,913 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=72.1 pTM=0.615 ipTM=0.255 tol=1.82
2024-12-08 07:06:26,042 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=71.4 pTM=0.602 ipTM=0.246 tol=1.21
2024-12-08 07:07:04,158 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=71.7 pTM=0.61 ipTM=0.235 tol=1.87
2024-12-08 07:07:42,312 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=71.8 pTM=0.606 ipTM=0.219 tol=2.07
2024-12-08 07:08:20,448 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=71.8 pTM=0.606 ipTM=0.22 tol=0.995
2024-12-08 07:08:58,565 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=71.7 pTM=0.608 ipTM=0.218 tol=1.37
2024-12-08 07:09:36,675 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=71.8 pTM=0.615 ipTM=0.232 tol=2.72
2024-12-08 07:10:14,793 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=71.4 pTM=0.605 ipTM=0.241 tol=1.43
2024-12-08 07:10:52,908 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=67.7 pTM=0.611 ipTM=0.244 tol=5.84
2024-12-08 07:11:31,032 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=71.4 pTM=0.605 ipTM=0.229 tol=6.23
2024-12-08 07:12:09,147 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=71.5 pTM=0.611 ipTM=0.251 tol=2.72
2024-12-08 07:12:47,270 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=71.2 pTM=0.607 ipTM=0.236 tol=1.86
2024-12-08 07:13:25,397 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=71.6 pTM=0.61 ipTM=0.25 tol=1.99
2024-12-08 07:14:03,510 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=71.6 pTM=0.607 ipTM=0.25 tol=0.832
2024-12-08 07:14:03,512 alphafold2_multimer_v3_model_4_seed_000 took 1181.9s (30 recycles)
2024-12-08 07:14:42,600 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=70.7 pTM=0.573 ipTM=0.257
2024-12-08 07:15:20,752 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=72.1 pTM=0.58 ipTM=0.273 tol=4.29
2024-12-08 07:15:58,904 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.8 pTM=0.619 ipTM=0.275 tol=1.44
2024-12-08 07:16:37,079 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.8 pTM=0.606 ipTM=0.23 tol=3.62
2024-12-08 07:17:15,253 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.2 pTM=0.595 ipTM=0.22 tol=2.94
2024-12-08 07:17:53,421 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.3 pTM=0.597 ipTM=0.217 tol=1.36
2024-12-08 07:18:31,573 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.1 pTM=0.599 ipTM=0.223 tol=4.82
2024-12-08 07:19:09,694 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72 pTM=0.603 ipTM=0.221 tol=2.89
2024-12-08 07:19:47,822 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=71.9 pTM=0.595 ipTM=0.197 tol=2.4
2024-12-08 07:20:25,933 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72 pTM=0.587 ipTM=0.191 tol=1.66
2024-12-08 07:21:04,060 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=71.9 pTM=0.589 ipTM=0.195 tol=1.09
2024-12-08 07:21:42,163 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=71.7 pTM=0.598 ipTM=0.224 tol=3.44
2024-12-08 07:22:20,285 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.9 pTM=0.597 ipTM=0.201 tol=2.41
2024-12-08 07:22:58,412 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=71.9 pTM=0.589 ipTM=0.198 tol=1.87
2024-12-08 07:23:36,522 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.9 pTM=0.591 ipTM=0.221 tol=3.35
2024-12-08 07:24:14,636 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.9 pTM=0.6 ipTM=0.229 tol=2.33
2024-12-08 07:24:52,774 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=71.9 pTM=0.594 ipTM=0.2 tol=3.04
2024-12-08 07:25:30,908 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=72.1 pTM=0.592 ipTM=0.197 tol=1.53
2024-12-08 07:26:09,025 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=71.8 pTM=0.596 ipTM=0.23 tol=2.74
2024-12-08 07:26:47,139 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71.8 pTM=0.604 ipTM=0.229 tol=2.11
2024-12-08 07:27:25,254 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=71.7 pTM=0.591 ipTM=0.198 tol=2.91
2024-12-08 07:28:03,396 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.8 pTM=0.587 ipTM=0.191 tol=1.79
2024-12-08 07:28:41,524 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=71.7 pTM=0.593 ipTM=0.216 tol=2.7
2024-12-08 07:29:19,638 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=71.9 pTM=0.604 ipTM=0.223 tol=2.38
2024-12-08 07:29:57,761 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=71.6 pTM=0.59 ipTM=0.2 tol=2.37
2024-12-08 07:30:35,871 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=71.5 pTM=0.588 ipTM=0.204 tol=1.21
2024-12-08 07:31:13,991 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=71.7 pTM=0.592 ipTM=0.222 tol=1.79
2024-12-08 07:31:52,101 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=71.6 pTM=0.597 ipTM=0.227 tol=0.549
2024-12-08 07:32:30,233 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=71.3 pTM=0.591 ipTM=0.223 tol=0.665
2024-12-08 07:33:08,383 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=70.4 pTM=0.592 ipTM=0.209 tol=4.24
2024-12-08 07:33:46,514 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=71.6 pTM=0.6 ipTM=0.237 tol=3.84
2024-12-08 07:33:46,515 alphafold2_multimer_v3_model_5_seed_000 took 1182.1s (30 recycles)
2024-12-08 07:33:47,455 reranking models by 'multimer' metric
2024-12-08 07:33:48,729 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 07:34:45,163 Relaxation took 57.7s
2024-12-08 07:34:45,163 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75 pTM=0.673 ipTM=0.315
2024-12-08 07:35:44,357 Relaxation took 59.2s
2024-12-08 07:35:44,357 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.6 pTM=0.648 ipTM=0.291
2024-12-08 07:38:42,741 Relaxation took 178.4s
2024-12-08 07:38:42,741 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.9 pTM=0.635 ipTM=0.277
2024-12-08 07:41:40,282 Relaxation took 177.5s
2024-12-08 07:41:40,282 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.6 pTM=0.607 ipTM=0.25
2024-12-08 07:45:05,470 Relaxation took 205.2s
2024-12-08 07:45:05,471 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=71.6 pTM=0.6 ipTM=0.237
2024-12-08 07:45:07,906 Done