2024-12-08 06:29:39,438 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 06:29:39,731 Running on GPU
2024-12-08 06:29:41,812 Found 6 citations for tools or databases
2024-12-08 06:29:41,812 Query 1/1: RNF181_C18orf8 (length 810)
2024-12-08 06:29:42,101 Sleeping for 5s. Reason: PENDING
2024-12-08 06:29:47,364 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:29:55,625 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:30:03,886 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:30:14,150 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:30:24,409 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:30:33,675 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:30:40,935 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:30:48,191 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:30:56,452 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:31:04,719 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:31:14,483 Sleeping for 10s. Reason: PENDING
2024-12-08 06:31:24,750 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:31:30,013 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:31:35,265 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:31:42,529 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:31:50,784 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:32:01,047 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:32:09,305 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:32:14,555 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:32:26,015 Setting max_seq=508, max_extra_seq=2048
2024-12-08 06:35:06,024 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.4 pTM=0.702 ipTM=0.164
2024-12-08 06:35:19,425 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.7 pTM=0.709 ipTM=0.188 tol=3.24
2024-12-08 06:35:32,837 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.1 pTM=0.71 ipTM=0.189 tol=1.13
2024-12-08 06:35:46,261 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.7 pTM=0.72 ipTM=0.207 tol=0.551
2024-12-08 06:35:59,706 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.9 pTM=0.725 ipTM=0.23 tol=1.19
2024-12-08 06:36:13,143 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.1 pTM=0.72 ipTM=0.21 tol=0.795
2024-12-08 06:36:26,597 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.1 pTM=0.72 ipTM=0.209 tol=0.386
2024-12-08 06:36:26,598 alphafold2_multimer_v3_model_1_seed_000 took 235.4s (6 recycles)
2024-12-08 06:36:40,459 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.4 pTM=0.711 ipTM=0.16
2024-12-08 06:36:53,920 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.9 pTM=0.732 ipTM=0.219 tol=4.29
2024-12-08 06:37:07,385 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.4 pTM=0.731 ipTM=0.196 tol=1.7
2024-12-08 06:37:20,844 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.1 pTM=0.725 ipTM=0.156 tol=1.47
2024-12-08 06:37:34,304 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.5 pTM=0.725 ipTM=0.155 tol=2.03
2024-12-08 06:37:47,740 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.9 pTM=0.728 ipTM=0.277 tol=1.94
2024-12-08 06:38:01,171 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.6 pTM=0.728 ipTM=0.21 tol=1.18
2024-12-08 06:38:14,610 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.9 pTM=0.733 ipTM=0.208 tol=1.21
2024-12-08 06:38:28,054 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.9 pTM=0.736 ipTM=0.23 tol=0.857
2024-12-08 06:38:41,511 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=82.2 pTM=0.746 ipTM=0.272 tol=2.08
2024-12-08 06:38:54,958 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=82 pTM=0.741 ipTM=0.242 tol=0.752
2024-12-08 06:39:08,394 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.8 pTM=0.736 ipTM=0.232 tol=0.479
2024-12-08 06:39:08,395 alphafold2_multimer_v3_model_2_seed_000 took 161.4s (11 recycles)
2024-12-08 06:39:22,241 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.1 pTM=0.702 ipTM=0.21
2024-12-08 06:39:35,652 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.9 pTM=0.699 ipTM=0.227 tol=3.03
2024-12-08 06:39:49,069 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.3 pTM=0.76 ipTM=0.444 tol=2.96
2024-12-08 06:40:02,492 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.2 pTM=0.731 ipTM=0.274 tol=1.05
2024-12-08 06:40:15,953 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.9 pTM=0.732 ipTM=0.249 tol=0.617
2024-12-08 06:40:29,412 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.8 pTM=0.726 ipTM=0.236 tol=0.752
2024-12-08 06:40:42,879 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.8 pTM=0.727 ipTM=0.242 tol=0.791
2024-12-08 06:40:56,345 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.6 pTM=0.721 ipTM=0.231 tol=1.08
2024-12-08 06:41:09,800 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.6 pTM=0.724 ipTM=0.235 tol=0.882
2024-12-08 06:41:23,245 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.6 pTM=0.725 ipTM=0.242 tol=0.953
2024-12-08 06:41:36,723 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.6 pTM=0.725 ipTM=0.241 tol=1.07
2024-12-08 06:41:50,180 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.2 pTM=0.719 ipTM=0.244 tol=0.765
2024-12-08 06:42:03,626 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79.6 pTM=0.723 ipTM=0.241 tol=1.17
2024-12-08 06:42:17,090 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=79.3 pTM=0.722 ipTM=0.247 tol=1.42
2024-12-08 06:42:30,555 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.4 pTM=0.722 ipTM=0.237 tol=1.19
2024-12-08 06:42:44,021 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=79.2 pTM=0.719 ipTM=0.238 tol=1.32
2024-12-08 06:42:57,496 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=79.4 pTM=0.72 ipTM=0.234 tol=0.986
2024-12-08 06:43:10,957 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=79.4 pTM=0.722 ipTM=0.248 tol=1.22
2024-12-08 06:43:24,423 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=79.8 pTM=0.727 ipTM=0.257 tol=1.05
2024-12-08 06:43:37,882 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=79.4 pTM=0.722 ipTM=0.245 tol=1.38
2024-12-08 06:43:51,359 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=79.7 pTM=0.726 ipTM=0.244 tol=0.934
2024-12-08 06:44:04,830 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=79.4 pTM=0.721 ipTM=0.245 tol=0.982
2024-12-08 06:44:18,313 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=79.5 pTM=0.724 ipTM=0.241 tol=1.19
2024-12-08 06:44:31,792 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=79.4 pTM=0.722 ipTM=0.248 tol=1.19
2024-12-08 06:44:45,259 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=79.3 pTM=0.718 ipTM=0.241 tol=1.08
2024-12-08 06:44:58,728 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=79.1 pTM=0.714 ipTM=0.229 tol=1
2024-12-08 06:45:12,195 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=79.4 pTM=0.72 ipTM=0.234 tol=1.11
2024-12-08 06:45:25,655 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=79.6 pTM=0.719 ipTM=0.232 tol=0.921
2024-12-08 06:45:39,112 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=79.5 pTM=0.722 ipTM=0.244 tol=2.51
2024-12-08 06:45:52,566 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=79.1 pTM=0.716 ipTM=0.238 tol=1.27
2024-12-08 06:46:06,025 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=79 pTM=0.714 ipTM=0.228 tol=0.851
2024-12-08 06:46:06,026 alphafold2_multimer_v3_model_3_seed_000 took 417.2s (30 recycles)
2024-12-08 06:46:19,940 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.8 pTM=0.688 ipTM=0.218
2024-12-08 06:46:33,476 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.3 pTM=0.689 ipTM=0.208 tol=3.86
2024-12-08 06:46:46,995 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.8 pTM=0.691 ipTM=0.196 tol=2.56
2024-12-08 06:47:00,533 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.9 pTM=0.694 ipTM=0.195 tol=2.06
2024-12-08 06:47:14,060 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.6 pTM=0.699 ipTM=0.206 tol=1.57
2024-12-08 06:47:27,583 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.3 pTM=0.694 ipTM=0.187 tol=0.823
2024-12-08 06:47:41,118 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.7 pTM=0.701 ipTM=0.216 tol=1.49
2024-12-08 06:47:54,617 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.4 pTM=0.696 ipTM=0.185 tol=1.53
2024-12-08 06:48:08,123 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.9 pTM=0.701 ipTM=0.236 tol=2.98
2024-12-08 06:48:21,636 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.4 pTM=0.696 ipTM=0.193 tol=1.66
2024-12-08 06:48:35,144 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.2 pTM=0.695 ipTM=0.209 tol=1.56
2024-12-08 06:48:48,648 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.1 pTM=0.694 ipTM=0.178 tol=1.78
2024-12-08 06:49:02,156 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.2 pTM=0.697 ipTM=0.203 tol=2.32
2024-12-08 06:49:15,671 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.2 pTM=0.695 ipTM=0.183 tol=1.81
2024-12-08 06:49:29,177 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.1 pTM=0.696 ipTM=0.194 tol=1.29
2024-12-08 06:49:42,673 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.1 pTM=0.695 ipTM=0.182 tol=1.1
2024-12-08 06:49:56,163 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.6 pTM=0.698 ipTM=0.203 tol=2.36
2024-12-08 06:50:09,648 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.2 pTM=0.696 ipTM=0.186 tol=1.85
2024-12-08 06:50:23,158 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=78.4 pTM=0.699 ipTM=0.208 tol=1.67
2024-12-08 06:50:36,664 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=78.2 pTM=0.699 ipTM=0.183 tol=1.75
2024-12-08 06:50:50,170 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=78.1 pTM=0.696 ipTM=0.188 tol=1.42
2024-12-08 06:51:03,686 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=78.2 pTM=0.694 ipTM=0.184 tol=1.14
2024-12-08 06:51:17,196 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=78.2 pTM=0.693 ipTM=0.203 tol=1.54
2024-12-08 06:51:30,708 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=78.2 pTM=0.693 ipTM=0.191 tol=2.65
2024-12-08 06:51:44,233 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=78.5 pTM=0.696 ipTM=0.209 tol=1.14
2024-12-08 06:51:57,765 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=78.1 pTM=0.691 ipTM=0.192 tol=2.07
2024-12-08 06:52:11,281 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=78.1 pTM=0.689 ipTM=0.185 tol=1.16
2024-12-08 06:52:24,800 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=78.1 pTM=0.691 ipTM=0.189 tol=1.32
2024-12-08 06:52:38,312 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=78.5 pTM=0.695 ipTM=0.206 tol=2.29
2024-12-08 06:52:51,828 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=78.2 pTM=0.692 ipTM=0.194 tol=1.73
2024-12-08 06:53:05,352 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=78.1 pTM=0.694 ipTM=0.207 tol=1.07
2024-12-08 06:53:05,353 alphafold2_multimer_v3_model_4_seed_000 took 418.9s (30 recycles)
2024-12-08 06:53:19,286 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.8 pTM=0.697 ipTM=0.21
2024-12-08 06:53:32,831 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.9 pTM=0.694 ipTM=0.192 tol=3.44
2024-12-08 06:53:46,348 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=80.7 pTM=0.73 ipTM=0.379 tol=1.99
2024-12-08 06:53:59,901 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=81.2 pTM=0.732 ipTM=0.303 tol=2.04
2024-12-08 06:54:13,451 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.2 pTM=0.757 ipTM=0.428 tol=2.19
2024-12-08 06:54:26,979 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=81.8 pTM=0.75 ipTM=0.354 tol=0.785
2024-12-08 06:54:40,516 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.8 pTM=0.749 ipTM=0.361 tol=0.406
2024-12-08 06:54:40,517 alphafold2_multimer_v3_model_5_seed_000 took 94.7s (6 recycles)
2024-12-08 06:54:40,930 reranking models by 'multimer' metric
2024-12-08 06:54:42,321 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 06:55:19,230 Relaxation took 38.3s
2024-12-08 06:55:19,230 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=81.8 pTM=0.749 ipTM=0.361
2024-12-08 06:55:52,758 Relaxation took 33.5s
2024-12-08 06:55:52,758 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.8 pTM=0.736 ipTM=0.232
2024-12-08 06:56:53,816 Relaxation took 61.1s
2024-12-08 06:56:53,816 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79 pTM=0.714 ipTM=0.228
2024-12-08 06:57:59,736 Relaxation took 65.9s
2024-12-08 06:57:59,736 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.1 pTM=0.72 ipTM=0.209
2024-12-08 06:59:37,303 Relaxation took 97.6s
2024-12-08 06:59:37,303 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.1 pTM=0.694 ipTM=0.207
2024-12-08 06:59:38,792 Done