2024-12-08 06:41:11,342 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 06:41:12,823 Running on GPU
2024-12-08 06:41:15,547 Found 6 citations for tools or databases
2024-12-08 06:41:15,547 Query 1/1: RNF181_NSUN3 (length 493)
2024-12-08 06:41:15,833 Sleeping for 8s. Reason: PENDING
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2024-12-08 06:43:14,547 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:43:21,814 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:43:29,678 Sleeping for 7s. Reason: PENDING
2024-12-08 06:43:36,941 Sleeping for 10s. Reason: PENDING
2024-12-08 06:43:47,201 Sleeping for 5s. Reason: RUNNING
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2024-12-08 06:44:27,505 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:44:36,764 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:44:47,037 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:44:56,016 Setting max_seq=508, max_extra_seq=2048
2024-12-08 06:49:14,672 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.8 pTM=0.694 ipTM=0.24
2024-12-08 06:49:22,368 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.1 pTM=0.693 ipTM=0.229 tol=5.01
2024-12-08 06:49:30,050 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.1 pTM=0.688 ipTM=0.208 tol=2.66
2024-12-08 06:49:37,723 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.4 pTM=0.687 ipTM=0.213 tol=1.83
2024-12-08 06:49:45,390 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.8 pTM=0.688 ipTM=0.208 tol=0.803
2024-12-08 06:49:53,046 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.5 pTM=0.685 ipTM=0.21 tol=0.6
2024-12-08 06:50:00,709 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.8 pTM=0.688 ipTM=0.215 tol=0.547
2024-12-08 06:50:08,379 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.8 pTM=0.686 ipTM=0.212 tol=0.644
2024-12-08 06:50:16,049 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.6 pTM=0.69 ipTM=0.221 tol=1.04
2024-12-08 06:50:23,715 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.6 pTM=0.683 ipTM=0.204 tol=0.488
2024-12-08 06:50:23,715 alphafold2_multimer_v3_model_1_seed_000 took 306.9s (9 recycles)
2024-12-08 06:50:31,636 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.8 pTM=0.676 ipTM=0.205
2024-12-08 06:50:39,336 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.7 pTM=0.689 ipTM=0.219 tol=4.18
2024-12-08 06:50:47,008 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=76.4 pTM=0.679 ipTM=0.189 tol=1.58
2024-12-08 06:50:54,674 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=76.1 pTM=0.679 ipTM=0.199 tol=0.571
2024-12-08 06:51:02,328 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.7 pTM=0.68 ipTM=0.199 tol=0.634
2024-12-08 06:51:09,981 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.3 pTM=0.678 ipTM=0.2 tol=0.435
2024-12-08 06:51:09,981 alphafold2_multimer_v3_model_2_seed_000 took 46.0s (5 recycles)
2024-12-08 06:51:17,882 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.7 pTM=0.673 ipTM=0.184
2024-12-08 06:51:25,543 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.8 pTM=0.676 ipTM=0.184 tol=6.39
2024-12-08 06:51:33,173 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=74.4 pTM=0.684 ipTM=0.219 tol=1.86
2024-12-08 06:51:40,810 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.2 pTM=0.679 ipTM=0.199 tol=1.04
2024-12-08 06:51:48,443 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=75.6 pTM=0.687 ipTM=0.223 tol=1.41
2024-12-08 06:51:56,085 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=75.8 pTM=0.688 ipTM=0.227 tol=0.942
2024-12-08 06:52:03,708 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=75.6 pTM=0.684 ipTM=0.219 tol=0.778
2024-12-08 06:52:11,348 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=75.9 pTM=0.689 ipTM=0.225 tol=0.552
2024-12-08 06:52:18,985 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=75.5 pTM=0.688 ipTM=0.221 tol=0.373
2024-12-08 06:52:18,986 alphafold2_multimer_v3_model_3_seed_000 took 68.8s (8 recycles)
2024-12-08 06:52:26,889 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.9 pTM=0.676 ipTM=0.195
2024-12-08 06:52:34,594 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.6 pTM=0.684 ipTM=0.195 tol=3.29
2024-12-08 06:52:42,278 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.3 pTM=0.676 ipTM=0.172 tol=4.45
2024-12-08 06:52:49,967 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.2 pTM=0.676 ipTM=0.171 tol=4.16
2024-12-08 06:52:57,646 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75 pTM=0.675 ipTM=0.168 tol=1.5
2024-12-08 06:53:05,320 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=74.4 pTM=0.68 ipTM=0.192 tol=0.582
2024-12-08 06:53:12,987 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=74.6 pTM=0.677 ipTM=0.183 tol=0.697
2024-12-08 06:53:20,674 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=74.9 pTM=0.679 ipTM=0.183 tol=0.446
2024-12-08 06:53:20,675 alphafold2_multimer_v3_model_4_seed_000 took 61.4s (7 recycles)
2024-12-08 06:53:28,584 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.4 pTM=0.68 ipTM=0.198
2024-12-08 06:53:36,266 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=75.4 pTM=0.673 ipTM=0.162 tol=2.54
2024-12-08 06:53:43,926 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.9 pTM=0.67 ipTM=0.159 tol=2.58
2024-12-08 06:53:51,579 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.8 pTM=0.667 ipTM=0.158 tol=3.54
2024-12-08 06:53:59,220 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75 pTM=0.668 ipTM=0.162 tol=1.48
2024-12-08 06:54:06,858 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=74.7 pTM=0.669 ipTM=0.174 tol=0.4
2024-12-08 06:54:06,859 alphafold2_multimer_v3_model_5_seed_000 took 45.9s (5 recycles)
2024-12-08 06:54:07,098 reranking models by 'multimer' metric
2024-12-08 06:54:09,880 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 06:54:50,477 Relaxation took 43.4s
2024-12-08 06:54:50,477 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=75.5 pTM=0.688 ipTM=0.221
2024-12-08 06:55:34,171 Relaxation took 43.7s
2024-12-08 06:55:34,171 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.6 pTM=0.683 ipTM=0.204
2024-12-08 06:55:54,290 Relaxation took 20.1s
2024-12-08 06:55:54,290 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.3 pTM=0.678 ipTM=0.2
2024-12-08 06:56:43,935 Relaxation took 49.6s
2024-12-08 06:56:43,935 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=74.9 pTM=0.679 ipTM=0.183
2024-12-08 06:57:27,136 Relaxation took 43.2s
2024-12-08 06:57:27,137 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=74.7 pTM=0.669 ipTM=0.174
2024-12-08 06:57:28,739 Done