2024-12-08 06:41:56,362 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 06:41:56,663 Running on GPU
2024-12-08 06:41:57,496 Found 6 citations for tools or databases
2024-12-08 06:41:57,497 Query 1/1: RNF181_OR5M3 (length 460)
2024-12-08 06:41:57,757 Sleeping for 6s. Reason: PENDING
2024-12-08 06:42:04,006 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:42:09,265 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:42:18,528 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:42:24,788 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:42:32,044 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:42:41,307 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:42:49,724 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:42:55,982 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:43:06,255 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:43:15,522 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:43:20,779 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:43:31,041 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:43:37,295 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:43:46,553 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:43:53,810 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:44:03,068 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:44:12,325 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:44:22,590 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:44:31,536 Sleeping for 10s. Reason: PENDING
2024-12-08 06:44:41,801 Sleeping for 5s. Reason: PENDING
2024-12-08 06:44:47,060 Sleeping for 7s. Reason: PENDING
2024-12-08 06:44:54,315 Sleeping for 5s. Reason: PENDING
2024-12-08 06:44:59,567 Sleeping for 10s. Reason: PENDING
2024-12-08 06:45:09,830 Sleeping for 7s. Reason: PENDING
2024-12-08 06:45:17,091 Sleeping for 9s. Reason: PENDING
2024-12-08 06:45:26,350 Sleeping for 8s. Reason: PENDING
2024-12-08 06:45:34,612 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:45:39,865 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:45:47,128 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:45:55,385 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:46:01,654 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:46:07,909 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:46:17,162 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:46:26,569 Sleeping for 8s. Reason: RUNNING
2024-12-08 06:46:34,829 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:46:42,096 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:46:49,351 Sleeping for 7s. Reason: RUNNING
2024-12-08 06:46:56,609 Sleeping for 10s. Reason: RUNNING
2024-12-08 06:47:06,869 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:47:12,129 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:47:17,383 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:47:22,640 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:47:31,149 Setting max_seq=508, max_extra_seq=2048
2024-12-08 06:49:44,291 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.2 pTM=0.656 ipTM=0.215
2024-12-08 06:49:49,159 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.6 pTM=0.648 ipTM=0.202 tol=3.1
2024-12-08 06:49:54,034 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=70.5 pTM=0.644 ipTM=0.204 tol=1.93
2024-12-08 06:49:58,911 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=70.6 pTM=0.637 ipTM=0.173 tol=1.01
2024-12-08 06:50:03,788 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=71.9 pTM=0.655 ipTM=0.227 tol=0.946
2024-12-08 06:50:08,673 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=72.2 pTM=0.643 ipTM=0.178 tol=1.01
2024-12-08 06:50:13,543 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=71.4 pTM=0.646 ipTM=0.202 tol=0.843
2024-12-08 06:50:18,432 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=72.1 pTM=0.642 ipTM=0.175 tol=0.63
2024-12-08 06:50:23,310 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=71.5 pTM=0.643 ipTM=0.194 tol=1.2
2024-12-08 06:50:28,182 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=72.1 pTM=0.638 ipTM=0.172 tol=1.37
2024-12-08 06:50:33,061 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=71.6 pTM=0.642 ipTM=0.184 tol=1.79
2024-12-08 06:50:37,942 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=72.4 pTM=0.64 ipTM=0.168 tol=1.61
2024-12-08 06:50:42,819 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=71.6 pTM=0.64 ipTM=0.184 tol=1.2
2024-12-08 06:50:47,692 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=71.8 pTM=0.635 ipTM=0.17 tol=1.2
2024-12-08 06:50:52,557 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=71.4 pTM=0.641 ipTM=0.19 tol=0.963
2024-12-08 06:50:57,432 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=71.9 pTM=0.635 ipTM=0.16 tol=0.844
2024-12-08 06:51:02,314 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=72.1 pTM=0.646 ipTM=0.197 tol=0.694
2024-12-08 06:51:07,192 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=72.2 pTM=0.639 ipTM=0.171 tol=0.822
2024-12-08 06:51:12,068 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=72.1 pTM=0.645 ipTM=0.2 tol=0.504
2024-12-08 06:51:16,947 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=71.8 pTM=0.632 ipTM=0.158 tol=0.577
2024-12-08 06:51:21,819 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=71.6 pTM=0.644 ipTM=0.204 tol=0.673
2024-12-08 06:51:26,691 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=72.2 pTM=0.637 ipTM=0.171 tol=0.81
2024-12-08 06:51:31,561 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=71.6 pTM=0.64 ipTM=0.187 tol=1.67
2024-12-08 06:51:36,441 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=72.2 pTM=0.636 ipTM=0.168 tol=1.31
2024-12-08 06:51:41,314 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=71.2 pTM=0.634 ipTM=0.178 tol=0.599
2024-12-08 06:51:46,195 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=72.2 pTM=0.636 ipTM=0.17 tol=0.566
2024-12-08 06:51:51,077 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=72.1 pTM=0.645 ipTM=0.193 tol=1.7
2024-12-08 06:51:55,959 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=72.8 pTM=0.641 ipTM=0.175 tol=1.84
2024-12-08 06:52:00,833 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=71.8 pTM=0.636 ipTM=0.173 tol=0.896
2024-12-08 06:52:05,711 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=72 pTM=0.632 ipTM=0.157 tol=0.495
2024-12-08 06:52:05,712 alphafold2_multimer_v3_model_1_seed_000 took 269.8s (29 recycles)
2024-12-08 06:52:10,746 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.9 pTM=0.676 ipTM=0.284
2024-12-08 06:52:15,662 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.9 pTM=0.664 ipTM=0.204 tol=1.51
2024-12-08 06:52:20,549 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.6 pTM=0.66 ipTM=0.223 tol=2.07
2024-12-08 06:52:25,460 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.2 pTM=0.657 ipTM=0.208 tol=1.12
2024-12-08 06:52:30,396 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.8 pTM=0.653 ipTM=0.198 tol=0.56
2024-12-08 06:52:35,308 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.9 pTM=0.643 ipTM=0.163 tol=0.65
2024-12-08 06:52:40,194 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.9 pTM=0.642 ipTM=0.171 tol=1.4
2024-12-08 06:52:45,091 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.9 pTM=0.646 ipTM=0.169 tol=0.937
2024-12-08 06:52:49,982 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=74.5 pTM=0.646 ipTM=0.179 tol=0.749
2024-12-08 06:52:54,886 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=74.8 pTM=0.641 ipTM=0.158 tol=0.935
2024-12-08 06:52:59,778 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=74.8 pTM=0.648 ipTM=0.182 tol=0.556
2024-12-08 06:53:04,679 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=75.3 pTM=0.645 ipTM=0.169 tol=0.576
2024-12-08 06:53:09,570 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=75.1 pTM=0.649 ipTM=0.187 tol=0.659
2024-12-08 06:53:14,470 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=75.1 pTM=0.645 ipTM=0.17 tol=1.02
2024-12-08 06:53:19,358 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=74.2 pTM=0.643 ipTM=0.172 tol=0.549
2024-12-08 06:53:24,251 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=74.7 pTM=0.639 ipTM=0.148 tol=0.738
2024-12-08 06:53:29,147 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=74.6 pTM=0.642 ipTM=0.165 tol=0.631
2024-12-08 06:53:34,036 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=74.8 pTM=0.639 ipTM=0.153 tol=0.865
2024-12-08 06:53:38,926 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=74.4 pTM=0.642 ipTM=0.171 tol=0.637
2024-12-08 06:53:43,821 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=74.8 pTM=0.638 ipTM=0.149 tol=0.73
2024-12-08 06:53:48,715 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=74.4 pTM=0.645 ipTM=0.182 tol=0.636
2024-12-08 06:53:53,607 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=74.7 pTM=0.639 ipTM=0.157 tol=0.808
2024-12-08 06:53:58,493 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=74.1 pTM=0.64 ipTM=0.163 tol=0.812
2024-12-08 06:54:03,383 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=74.6 pTM=0.639 ipTM=0.154 tol=0.482
2024-12-08 06:54:03,384 alphafold2_multimer_v3_model_2_seed_000 took 117.5s (23 recycles)
2024-12-08 06:54:08,425 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.1 pTM=0.723 ipTM=0.406
2024-12-08 06:54:13,323 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.1 pTM=0.671 ipTM=0.247 tol=2.51
2024-12-08 06:54:18,209 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.8 pTM=0.661 ipTM=0.243 tol=0.508
2024-12-08 06:54:23,103 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=74.3 pTM=0.659 ipTM=0.229 tol=1.61
2024-12-08 06:54:28,001 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74.9 pTM=0.668 ipTM=0.269 tol=0.678
2024-12-08 06:54:32,900 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.6 pTM=0.66 ipTM=0.232 tol=0.487
2024-12-08 06:54:32,900 alphafold2_multimer_v3_model_3_seed_000 took 29.4s (5 recycles)
2024-12-08 06:54:37,979 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.9 pTM=0.756 ipTM=0.52
2024-12-08 06:54:42,936 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.5 pTM=0.695 ipTM=0.301 tol=2.43
2024-12-08 06:54:47,841 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=72.2 pTM=0.656 ipTM=0.203 tol=1.52
2024-12-08 06:54:52,741 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.5 pTM=0.644 ipTM=0.166 tol=1.11
2024-12-08 06:54:57,639 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.6 pTM=0.65 ipTM=0.193 tol=1.36
2024-12-08 06:55:02,540 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73.1 pTM=0.634 ipTM=0.14 tol=0.893
2024-12-08 06:55:07,443 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=72.9 pTM=0.652 ipTM=0.206 tol=1.3
2024-12-08 06:55:12,342 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.4 pTM=0.637 ipTM=0.15 tol=0.873
2024-12-08 06:55:17,240 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=72.9 pTM=0.651 ipTM=0.21 tol=0.781
2024-12-08 06:55:22,133 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.4 pTM=0.632 ipTM=0.145 tol=0.908
2024-12-08 06:55:27,035 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.6 pTM=0.657 ipTM=0.218 tol=1.06
2024-12-08 06:55:31,925 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=73.8 pTM=0.637 ipTM=0.153 tol=1.07
2024-12-08 06:55:36,823 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.5 pTM=0.652 ipTM=0.205 tol=0.921
2024-12-08 06:55:41,717 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.3 pTM=0.634 ipTM=0.148 tol=0.874
2024-12-08 06:55:46,614 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.8 pTM=0.659 ipTM=0.219 tol=0.941
2024-12-08 06:55:51,507 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73.3 pTM=0.636 ipTM=0.148 tol=0.922
2024-12-08 06:55:56,402 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.5 pTM=0.654 ipTM=0.212 tol=0.879
2024-12-08 06:56:01,292 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.4 pTM=0.638 ipTM=0.156 tol=1.83
2024-12-08 06:56:06,187 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=73.4 pTM=0.65 ipTM=0.201 tol=1.08
2024-12-08 06:56:11,080 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=73.2 pTM=0.63 ipTM=0.136 tol=1.61
2024-12-08 06:56:15,970 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=73.2 pTM=0.653 ipTM=0.214 tol=0.973
2024-12-08 06:56:20,864 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=73.5 pTM=0.629 ipTM=0.14 tol=0.997
2024-12-08 06:56:25,761 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=73.2 pTM=0.652 ipTM=0.21 tol=0.879
2024-12-08 06:56:30,647 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73.2 pTM=0.631 ipTM=0.14 tol=1.4
2024-12-08 06:56:35,535 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=73.1 pTM=0.652 ipTM=0.217 tol=0.987
2024-12-08 06:56:40,419 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=73.2 pTM=0.634 ipTM=0.153 tol=1.17
2024-12-08 06:56:45,319 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=73.6 pTM=0.656 ipTM=0.218 tol=1.08
2024-12-08 06:56:50,225 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73.6 pTM=0.635 ipTM=0.148 tol=0.879
2024-12-08 06:56:55,123 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=73.8 pTM=0.653 ipTM=0.206 tol=1.08
2024-12-08 06:57:00,023 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73.5 pTM=0.634 ipTM=0.148 tol=0.695
2024-12-08 06:57:04,924 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=69.6 pTM=0.653 ipTM=0.207 tol=4.54
2024-12-08 06:57:04,924 alphafold2_multimer_v3_model_4_seed_000 took 151.9s (30 recycles)
2024-12-08 06:57:09,975 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.5 pTM=0.725 ipTM=0.446
2024-12-08 06:57:14,885 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.1 pTM=0.667 ipTM=0.231 tol=3.52
2024-12-08 06:57:19,777 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.1 pTM=0.674 ipTM=0.268 tol=1.62
2024-12-08 06:57:24,675 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.3 pTM=0.67 ipTM=0.247 tol=0.852
2024-12-08 06:57:29,569 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=73.5 pTM=0.653 ipTM=0.202 tol=0.603
2024-12-08 06:57:34,468 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=73.8 pTM=0.643 ipTM=0.16 tol=0.468
2024-12-08 06:57:34,469 alphafold2_multimer_v3_model_5_seed_000 took 29.4s (5 recycles)
2024-12-08 06:57:34,618 reranking models by 'multimer' metric
2024-12-08 06:57:35,366 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 06:57:49,863 Relaxation took 15.2s
2024-12-08 06:57:49,863 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=74.6 pTM=0.66 ipTM=0.232
2024-12-08 06:58:17,994 Relaxation took 28.1s
2024-12-08 06:58:17,994 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=69.6 pTM=0.653 ipTM=0.207
2024-12-08 06:58:29,576 Relaxation took 11.6s
2024-12-08 06:58:29,576 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=73.8 pTM=0.643 ipTM=0.16
2024-12-08 06:58:52,334 Relaxation took 22.8s
2024-12-08 06:58:52,335 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=72 pTM=0.632 ipTM=0.157
2024-12-08 06:59:09,205 Relaxation took 16.9s
2024-12-08 06:59:09,205 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.6 pTM=0.639 ipTM=0.154
2024-12-08 06:59:10,213 Done