2024-12-08 06:52:22,523 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 06:52:22,810 Running on GPU
2024-12-08 06:52:25,217 Found 6 citations for tools or databases
2024-12-08 06:52:25,218 Query 1/1: RNF181_OR5M8 (length 464)
2024-12-08 06:52:25,496 Sleeping for 10s. Reason: PENDING
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2024-12-08 06:54:45,702 Sleeping for 6s. Reason: PENDING
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2024-12-08 06:56:38,570 Sleeping for 9s. Reason: RUNNING
2024-12-08 06:56:50,054 Setting max_seq=508, max_extra_seq=2048
2024-12-08 06:58:49,238 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.2 pTM=0.639 ipTM=0.197
2024-12-08 06:58:53,835 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.5 pTM=0.652 ipTM=0.219 tol=5.1
2024-12-08 06:58:58,430 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.3 pTM=0.634 ipTM=0.189 tol=1.47
2024-12-08 06:59:03,018 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.9 pTM=0.638 ipTM=0.201 tol=1.46
2024-12-08 06:59:07,604 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.2 pTM=0.629 ipTM=0.171 tol=1.17
2024-12-08 06:59:12,188 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=70 pTM=0.644 ipTM=0.216 tol=0.835
2024-12-08 06:59:16,777 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=70.1 pTM=0.632 ipTM=0.179 tol=0.562
2024-12-08 06:59:21,363 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=70.1 pTM=0.634 ipTM=0.184 tol=0.491
2024-12-08 06:59:21,364 alphafold2_multimer_v3_model_1_seed_000 took 146.5s (7 recycles)
2024-12-08 06:59:26,112 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.6 pTM=0.655 ipTM=0.234
2024-12-08 06:59:30,706 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=71.5 pTM=0.636 ipTM=0.175 tol=2.64
2024-12-08 06:59:35,296 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.1 pTM=0.625 ipTM=0.161 tol=1.21
2024-12-08 06:59:39,881 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.3 pTM=0.625 ipTM=0.151 tol=0.882
2024-12-08 06:59:44,473 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=72.2 pTM=0.62 ipTM=0.128 tol=0.863
2024-12-08 06:59:49,059 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.3 pTM=0.618 ipTM=0.132 tol=0.713
2024-12-08 06:59:53,657 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=72.3 pTM=0.618 ipTM=0.142 tol=0.394
2024-12-08 06:59:53,658 alphafold2_multimer_v3_model_2_seed_000 took 32.1s (6 recycles)
2024-12-08 06:59:58,419 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.2 pTM=0.654 ipTM=0.235
2024-12-08 07:00:03,025 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.9 pTM=0.659 ipTM=0.238 tol=2.63
2024-12-08 07:00:07,623 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.3 pTM=0.642 ipTM=0.21 tol=1.15
2024-12-08 07:00:12,215 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.1 pTM=0.648 ipTM=0.23 tol=0.571
2024-12-08 07:00:16,815 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=72.2 pTM=0.641 ipTM=0.201 tol=0.571
2024-12-08 07:00:21,411 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.7 pTM=0.654 ipTM=0.241 tol=0.814
2024-12-08 07:00:26,009 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.2 pTM=0.639 ipTM=0.202 tol=0.703
2024-12-08 07:00:30,605 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=72.9 pTM=0.661 ipTM=0.265 tol=0.839
2024-12-08 07:00:35,206 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.1 pTM=0.646 ipTM=0.214 tol=0.854
2024-12-08 07:00:39,800 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=72.8 pTM=0.657 ipTM=0.25 tol=0.747
2024-12-08 07:00:44,401 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=72.8 pTM=0.649 ipTM=0.225 tol=0.987
2024-12-08 07:00:48,994 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=72.9 pTM=0.665 ipTM=0.271 tol=0.837
2024-12-08 07:00:53,593 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=72.9 pTM=0.646 ipTM=0.216 tol=0.693
2024-12-08 07:00:58,190 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=72.7 pTM=0.654 ipTM=0.239 tol=0.648
2024-12-08 07:01:02,789 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=72.5 pTM=0.642 ipTM=0.199 tol=0.575
2024-12-08 07:01:07,384 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=72.6 pTM=0.655 ipTM=0.246 tol=0.683
2024-12-08 07:01:11,981 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=72.5 pTM=0.642 ipTM=0.207 tol=0.524
2024-12-08 07:01:16,573 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=72.5 pTM=0.656 ipTM=0.254 tol=0.702
2024-12-08 07:01:21,167 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=72.8 pTM=0.646 ipTM=0.22 tol=0.919
2024-12-08 07:01:25,761 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=72.4 pTM=0.656 ipTM=0.255 tol=0.772
2024-12-08 07:01:30,358 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=72.4 pTM=0.642 ipTM=0.211 tol=0.744
2024-12-08 07:01:34,951 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=72.4 pTM=0.653 ipTM=0.244 tol=0.878
2024-12-08 07:01:39,549 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=72.2 pTM=0.641 ipTM=0.208 tol=0.674
2024-12-08 07:01:44,143 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=72.7 pTM=0.658 ipTM=0.254 tol=0.792
2024-12-08 07:01:48,742 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=72.8 pTM=0.646 ipTM=0.214 tol=0.944
2024-12-08 07:01:53,338 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.6 pTM=0.658 ipTM=0.253 tol=1.01
2024-12-08 07:01:57,936 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=72.6 pTM=0.643 ipTM=0.209 tol=0.874
2024-12-08 07:02:02,528 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72.2 pTM=0.652 ipTM=0.244 tol=0.657
2024-12-08 07:02:07,130 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=72.9 pTM=0.646 ipTM=0.217 tol=0.789
2024-12-08 07:02:11,722 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=72.5 pTM=0.655 ipTM=0.252 tol=0.883
2024-12-08 07:02:16,320 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=72.9 pTM=0.646 ipTM=0.218 tol=0.837
2024-12-08 07:02:16,320 alphafold2_multimer_v3_model_3_seed_000 took 142.5s (30 recycles)
2024-12-08 07:02:21,093 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.6 pTM=0.675 ipTM=0.288
2024-12-08 07:02:25,711 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.1 pTM=0.659 ipTM=0.225 tol=6.09
2024-12-08 07:02:30,321 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=70.8 pTM=0.648 ipTM=0.21 tol=2.52
2024-12-08 07:02:34,928 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=70.8 pTM=0.65 ipTM=0.214 tol=0.646
2024-12-08 07:02:39,541 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.2 pTM=0.646 ipTM=0.192 tol=1.63
2024-12-08 07:02:44,149 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.7 pTM=0.654 ipTM=0.219 tol=1.11
2024-12-08 07:02:48,761 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.2 pTM=0.644 ipTM=0.188 tol=1.27
2024-12-08 07:02:53,370 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=71.8 pTM=0.655 ipTM=0.223 tol=1.25
2024-12-08 07:02:57,981 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.4 pTM=0.639 ipTM=0.173 tol=1.04
2024-12-08 07:03:02,589 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=71.9 pTM=0.654 ipTM=0.225 tol=1.19
2024-12-08 07:03:07,202 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=71.7 pTM=0.64 ipTM=0.178 tol=1.12
2024-12-08 07:03:11,806 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=71.8 pTM=0.655 ipTM=0.225 tol=1.29
2024-12-08 07:03:16,415 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=71.6 pTM=0.636 ipTM=0.169 tol=1.67
2024-12-08 07:03:21,022 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=71.8 pTM=0.65 ipTM=0.214 tol=1.49
2024-12-08 07:03:25,632 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=71.2 pTM=0.632 ipTM=0.159 tol=1.22
2024-12-08 07:03:30,239 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=71.8 pTM=0.649 ipTM=0.207 tol=1.19
2024-12-08 07:03:34,852 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=71.7 pTM=0.634 ipTM=0.159 tol=0.876
2024-12-08 07:03:39,457 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=71.6 pTM=0.649 ipTM=0.212 tol=0.988
2024-12-08 07:03:44,067 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=71.4 pTM=0.632 ipTM=0.159 tol=1.85
2024-12-08 07:03:48,675 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=71.7 pTM=0.653 ipTM=0.221 tol=1.33
2024-12-08 07:03:53,287 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=71.4 pTM=0.637 ipTM=0.172 tol=1.54
2024-12-08 07:03:57,893 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=71.4 pTM=0.648 ipTM=0.209 tol=0.991
2024-12-08 07:04:02,504 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=71.2 pTM=0.632 ipTM=0.159 tol=1.14
2024-12-08 07:04:07,112 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=71.4 pTM=0.648 ipTM=0.212 tol=1.42
2024-12-08 07:04:11,721 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=71.5 pTM=0.634 ipTM=0.164 tol=1.24
2024-12-08 07:04:16,328 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=71.6 pTM=0.65 ipTM=0.208 tol=1.04
2024-12-08 07:04:20,938 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=71.6 pTM=0.632 ipTM=0.158 tol=0.808
2024-12-08 07:04:25,544 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=71.7 pTM=0.649 ipTM=0.211 tol=0.921
2024-12-08 07:04:30,156 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=71.5 pTM=0.635 ipTM=0.166 tol=0.787
2024-12-08 07:04:34,757 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=71.5 pTM=0.647 ipTM=0.214 tol=0.855
2024-12-08 07:04:39,367 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=71.4 pTM=0.634 ipTM=0.164 tol=0.935
2024-12-08 07:04:39,368 alphafold2_multimer_v3_model_4_seed_000 took 142.9s (30 recycles)
2024-12-08 07:04:44,132 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.2 pTM=0.662 ipTM=0.255
2024-12-08 07:04:48,741 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.9 pTM=0.659 ipTM=0.24 tol=2.92
2024-12-08 07:04:53,348 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.2 pTM=0.655 ipTM=0.239 tol=1.36
2024-12-08 07:04:57,950 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.2 pTM=0.656 ipTM=0.236 tol=0.99
2024-12-08 07:05:02,555 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.4 pTM=0.654 ipTM=0.218 tol=0.714
2024-12-08 07:05:07,159 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.4 pTM=0.656 ipTM=0.233 tol=0.546
2024-12-08 07:05:11,760 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.3 pTM=0.656 ipTM=0.228 tol=0.735
2024-12-08 07:05:16,362 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72.3 pTM=0.656 ipTM=0.229 tol=0.45
2024-12-08 07:05:16,362 alphafold2_multimer_v3_model_5_seed_000 took 36.8s (7 recycles)
2024-12-08 07:05:16,516 reranking models by 'multimer' metric
2024-12-08 07:05:18,665 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 07:05:55,691 Relaxation took 39.2s
2024-12-08 07:05:55,691 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.3 pTM=0.656 ipTM=0.229
2024-12-08 07:06:12,977 Relaxation took 17.3s
2024-12-08 07:06:12,978 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.9 pTM=0.646 ipTM=0.218
2024-12-08 07:06:39,187 Relaxation took 26.2s
2024-12-08 07:06:39,187 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=70.1 pTM=0.634 ipTM=0.184
2024-12-08 07:07:11,841 Relaxation took 32.7s
2024-12-08 07:07:11,841 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.4 pTM=0.634 ipTM=0.164
2024-12-08 07:07:33,177 Relaxation took 21.3s
2024-12-08 07:07:33,177 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=72.3 pTM=0.618 ipTM=0.142
2024-12-08 07:07:34,177 Done