2024-12-08 06:59:28,766 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 06:59:29,074 Running on GPU
2024-12-08 06:59:30,600 Found 6 citations for tools or databases
2024-12-08 06:59:30,600 Query 1/1: RNF181_PSMB3 (length 358)
2024-12-08 06:59:30,868 Sleeping for 8s. Reason: PENDING
2024-12-08 06:59:39,121 Sleeping for 6s. Reason: RUNNING
2024-12-08 06:59:45,374 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:59:50,631 Sleeping for 5s. Reason: RUNNING
2024-12-08 06:59:55,891 Sleeping for 6s. Reason: RUNNING
2024-12-08 07:00:02,158 Sleeping for 8s. Reason: RUNNING
2024-12-08 07:00:10,414 Sleeping for 7s. Reason: RUNNING
2024-12-08 07:00:17,678 Sleeping for 8s. Reason: RUNNING
2024-12-08 07:00:25,938 Sleeping for 7s. Reason: RUNNING
2024-12-08 07:00:33,205 Sleeping for 7s. Reason: RUNNING
2024-12-08 07:00:40,458 Sleeping for 10s. Reason: RUNNING
2024-12-08 07:00:50,739 Sleeping for 9s. Reason: RUNNING
2024-12-08 07:01:01,481 Sleeping for 10s. Reason: PENDING
2024-12-08 07:01:11,742 Sleeping for 9s. Reason: RUNNING
2024-12-08 07:01:21,007 Sleeping for 5s. Reason: RUNNING
2024-12-08 07:01:26,263 Sleeping for 10s. Reason: RUNNING
2024-12-08 07:01:36,521 Sleeping for 9s. Reason: RUNNING
2024-12-08 07:01:45,777 Sleeping for 7s. Reason: RUNNING
2024-12-08 07:01:54,895 Setting max_seq=508, max_extra_seq=2048
2024-12-08 07:04:28,045 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.1 pTM=0.562 ipTM=0.169
2024-12-08 07:04:31,576 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.8 pTM=0.534 ipTM=0.156 tol=3.03
2024-12-08 07:04:35,107 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=70.8 pTM=0.566 ipTM=0.183 tol=1.55
2024-12-08 07:04:38,632 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.8 pTM=0.552 ipTM=0.155 tol=0.801
2024-12-08 07:04:42,162 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=71.4 pTM=0.563 ipTM=0.169 tol=0.931
2024-12-08 07:04:45,689 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=72.1 pTM=0.577 ipTM=0.215 tol=1.44
2024-12-08 07:04:49,217 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=71.3 pTM=0.56 ipTM=0.164 tol=0.915
2024-12-08 07:04:52,748 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=73.1 pTM=0.578 ipTM=0.228 tol=1.82
2024-12-08 07:04:56,280 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=72.1 pTM=0.567 ipTM=0.163 tol=1.51
2024-12-08 07:04:59,814 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=73.2 pTM=0.587 ipTM=0.24 tol=1.17
2024-12-08 07:05:03,350 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=71.8 pTM=0.566 ipTM=0.163 tol=1.08
2024-12-08 07:05:06,878 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=72.7 pTM=0.579 ipTM=0.237 tol=1.54
2024-12-08 07:05:10,418 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=72.4 pTM=0.571 ipTM=0.166 tol=1.21
2024-12-08 07:05:13,951 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=71.7 pTM=0.568 ipTM=0.185 tol=1.67
2024-12-08 07:05:17,479 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=71.2 pTM=0.561 ipTM=0.162 tol=1.75
2024-12-08 07:05:21,009 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=72.5 pTM=0.577 ipTM=0.21 tol=1.08
2024-12-08 07:05:24,542 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=71.7 pTM=0.564 ipTM=0.164 tol=1.24
2024-12-08 07:05:28,072 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=71.6 pTM=0.563 ipTM=0.173 tol=1.49
2024-12-08 07:05:31,610 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=71.7 pTM=0.567 ipTM=0.175 tol=1.18
2024-12-08 07:05:35,148 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=71.9 pTM=0.568 ipTM=0.184 tol=1.42
2024-12-08 07:05:38,707 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=71.6 pTM=0.566 ipTM=0.163 tol=1.42
2024-12-08 07:05:42,261 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=71.6 pTM=0.564 ipTM=0.186 tol=1.25
2024-12-08 07:05:45,796 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=71.4 pTM=0.565 ipTM=0.16 tol=0.89
2024-12-08 07:05:49,327 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=71.7 pTM=0.575 ipTM=0.205 tol=0.999
2024-12-08 07:05:52,866 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=72.4 pTM=0.562 ipTM=0.152 tol=1.41
2024-12-08 07:05:56,409 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=72.4 pTM=0.571 ipTM=0.203 tol=2.8
2024-12-08 07:05:59,946 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=71.6 pTM=0.562 ipTM=0.154 tol=2.26
2024-12-08 07:06:03,478 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=71.4 pTM=0.567 ipTM=0.192 tol=0.985
2024-12-08 07:06:07,014 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=71.3 pTM=0.556 ipTM=0.153 tol=2.03
2024-12-08 07:06:10,546 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=71.7 pTM=0.567 ipTM=0.209 tol=2.26
2024-12-08 07:06:14,081 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=71.2 pTM=0.562 ipTM=0.163 tol=1.98
2024-12-08 07:06:14,081 alphafold2_multimer_v3_model_1_seed_000 took 253.9s (30 recycles)
2024-12-08 07:06:17,720 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.8 pTM=0.55 ipTM=0.12
2024-12-08 07:06:21,245 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=69.8 pTM=0.541 ipTM=0.159 tol=5.12
2024-12-08 07:06:24,786 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.6 pTM=0.599 ipTM=0.311 tol=4.2
2024-12-08 07:06:28,309 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=73.8 pTM=0.571 ipTM=0.231 tol=1.7
2024-12-08 07:06:31,838 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.3 pTM=0.585 ipTM=0.274 tol=1.31
2024-12-08 07:06:35,368 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.1 pTM=0.56 ipTM=0.192 tol=1.26
2024-12-08 07:06:38,895 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.9 pTM=0.562 ipTM=0.203 tol=1.15
2024-12-08 07:06:42,423 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.5 pTM=0.587 ipTM=0.283 tol=1.05
2024-12-08 07:06:45,946 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.4 pTM=0.616 ipTM=0.388 tol=1.48
2024-12-08 07:06:49,490 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78 pTM=0.655 ipTM=0.479 tol=0.85
2024-12-08 07:06:53,018 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=74.8 pTM=0.583 ipTM=0.275 tol=0.895
2024-12-08 07:06:56,545 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=74.6 pTM=0.583 ipTM=0.287 tol=0.938
2024-12-08 07:07:00,092 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=76.9 pTM=0.609 ipTM=0.341 tol=0.902
2024-12-08 07:07:03,619 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=73.9 pTM=0.586 ipTM=0.303 tol=1.15
2024-12-08 07:07:07,150 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=75.6 pTM=0.594 ipTM=0.307 tol=0.767
2024-12-08 07:07:10,684 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=74.9 pTM=0.59 ipTM=0.304 tol=0.991
2024-12-08 07:07:14,221 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=75.6 pTM=0.59 ipTM=0.286 tol=1.13
2024-12-08 07:07:17,753 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=73.8 pTM=0.571 ipTM=0.243 tol=1.06
2024-12-08 07:07:21,293 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=75.6 pTM=0.592 ipTM=0.29 tol=1
2024-12-08 07:07:24,821 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=74.6 pTM=0.592 ipTM=0.315 tol=1.04
2024-12-08 07:07:28,372 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=76.8 pTM=0.623 ipTM=0.386 tol=1.61
2024-12-08 07:07:31,899 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=74.7 pTM=0.589 ipTM=0.308 tol=2.04
2024-12-08 07:07:35,431 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=74 pTM=0.563 ipTM=0.191 tol=1.38
2024-12-08 07:07:38,961 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=72.2 pTM=0.549 ipTM=0.161 tol=1.22
2024-12-08 07:07:42,503 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=74.5 pTM=0.571 ipTM=0.211 tol=1.1
2024-12-08 07:07:46,034 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=72.8 pTM=0.552 ipTM=0.165 tol=0.943
2024-12-08 07:07:49,571 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=74.3 pTM=0.567 ipTM=0.207 tol=1.09
2024-12-08 07:07:53,097 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=72.4 pTM=0.55 ipTM=0.174 tol=1.02
2024-12-08 07:07:56,626 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=73.5 pTM=0.56 ipTM=0.205 tol=0.802
2024-12-08 07:08:00,157 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=73.1 pTM=0.553 ipTM=0.176 tol=0.793
2024-12-08 07:08:03,696 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=74.4 pTM=0.567 ipTM=0.212 tol=0.819
2024-12-08 07:08:03,696 alphafold2_multimer_v3_model_2_seed_000 took 109.5s (30 recycles)
2024-12-08 07:08:07,331 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.4 pTM=0.529 ipTM=0.132
2024-12-08 07:08:10,884 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.6 pTM=0.576 ipTM=0.234 tol=5.86
2024-12-08 07:08:14,449 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.9 pTM=0.738 ipTM=0.684 tol=9.16
2024-12-08 07:08:18,027 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.7 pTM=0.757 ipTM=0.7 tol=3.78
2024-12-08 07:08:21,609 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.8 pTM=0.759 ipTM=0.695 tol=0.877
2024-12-08 07:08:25,182 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.5 pTM=0.755 ipTM=0.688 tol=0.216
2024-12-08 07:08:25,182 alphafold2_multimer_v3_model_3_seed_000 took 21.4s (5 recycles)
2024-12-08 07:08:28,822 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=69.4 pTM=0.546 ipTM=0.164
2024-12-08 07:08:32,386 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.1 pTM=0.566 ipTM=0.173 tol=4.55
2024-12-08 07:08:35,937 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=70.6 pTM=0.561 ipTM=0.193 tol=4.5
2024-12-08 07:08:39,510 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.9 pTM=0.739 ipTM=0.699 tol=5.21
2024-12-08 07:08:43,087 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=81.8 pTM=0.762 ipTM=0.731 tol=1.9
2024-12-08 07:08:46,658 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=81.6 pTM=0.764 ipTM=0.739 tol=0.998
2024-12-08 07:08:50,225 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=81.7 pTM=0.764 ipTM=0.733 tol=1
2024-12-08 07:08:53,800 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=82 pTM=0.767 ipTM=0.731 tol=0.809
2024-12-08 07:08:57,377 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=82.1 pTM=0.769 ipTM=0.742 tol=0.508
2024-12-08 07:09:00,954 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=82.6 pTM=0.775 ipTM=0.754 tol=0.378
2024-12-08 07:09:00,954 alphafold2_multimer_v3_model_4_seed_000 took 35.7s (9 recycles)
2024-12-08 07:09:04,596 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.6 pTM=0.539 ipTM=0.127
2024-12-08 07:09:08,136 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.6 pTM=0.567 ipTM=0.248 tol=7.61
2024-12-08 07:09:11,711 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.6 pTM=0.695 ipTM=0.579 tol=4.1
2024-12-08 07:09:15,296 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.3 pTM=0.759 ipTM=0.725 tol=2.09
2024-12-08 07:09:18,878 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.5 pTM=0.755 ipTM=0.7 tol=1.96
2024-12-08 07:09:22,452 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80 pTM=0.746 ipTM=0.685 tol=0.622
2024-12-08 07:09:26,026 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.6 pTM=0.738 ipTM=0.66 tol=0.545
2024-12-08 07:09:29,602 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.7 pTM=0.737 ipTM=0.657 tol=1.87
2024-12-08 07:09:33,176 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.7 pTM=0.744 ipTM=0.666 tol=0.347
2024-12-08 07:09:33,176 alphafold2_multimer_v3_model_5_seed_000 took 32.1s (8 recycles)
2024-12-08 07:09:33,273 reranking models by 'multimer' metric
2024-12-08 07:09:35,057 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 07:09:46,527 Relaxation took 13.3s
2024-12-08 07:09:46,527 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.6 pTM=0.775 ipTM=0.754
2024-12-08 07:09:53,849 Relaxation took 7.3s
2024-12-08 07:09:53,849 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.5 pTM=0.755 ipTM=0.688
2024-12-08 07:10:01,138 Relaxation took 7.3s
2024-12-08 07:10:01,138 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.7 pTM=0.744 ipTM=0.666
2024-12-08 07:10:09,641 Relaxation took 8.5s
2024-12-08 07:10:09,641 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.4 pTM=0.567 ipTM=0.212
2024-12-08 07:10:25,123 Relaxation took 15.5s
2024-12-08 07:10:25,123 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=71.2 pTM=0.562 ipTM=0.163
2024-12-08 07:10:26,015 Done