2024-12-08 07:02:35,698 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 07:02:36,032 Running on GPU
2024-12-08 07:02:37,608 Found 6 citations for tools or databases
2024-12-08 07:02:37,608 Query 1/1: RNF181_SLC44A5 (length 872)
2024-12-08 07:02:37,883 Sleeping for 9s. Reason: PENDING
2024-12-08 07:02:47,143 Sleeping for 10s. Reason: RUNNING
2024-12-08 07:02:57,401 Sleeping for 10s. Reason: RUNNING
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2024-12-08 07:03:25,179 Sleeping for 5s. Reason: RUNNING
2024-12-08 07:03:30,433 Sleeping for 9s. Reason: RUNNING
2024-12-08 07:03:39,692 Sleeping for 6s. Reason: RUNNING
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2024-12-08 07:03:53,221 Sleeping for 6s. Reason: RUNNING
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2024-12-08 07:04:37,790 Sleeping for 6s. Reason: RUNNING
2024-12-08 07:04:45,713 Sleeping for 9s. Reason: PENDING
2024-12-08 07:04:54,975 Sleeping for 8s. Reason: RUNNING
2024-12-08 07:05:03,233 Sleeping for 10s. Reason: RUNNING
2024-12-08 07:05:13,492 Sleeping for 7s. Reason: RUNNING
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2024-12-08 07:05:34,264 Sleeping for 10s. Reason: RUNNING
2024-12-08 07:05:44,528 Sleeping for 9s. Reason: RUNNING
2024-12-08 07:05:53,787 Sleeping for 5s. Reason: RUNNING
2024-12-08 07:06:01,898 Setting max_seq=508, max_extra_seq=2048
2024-12-08 07:08:47,974 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.6 pTM=0.691 ipTM=0.174
2024-12-08 07:09:05,681 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.1 pTM=0.707 ipTM=0.299 tol=5.43
2024-12-08 07:09:23,371 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.4 pTM=0.708 ipTM=0.273 tol=1.66
2024-12-08 07:09:41,073 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74 pTM=0.702 ipTM=0.233 tol=1.32
2024-12-08 07:09:58,809 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=74.2 pTM=0.707 ipTM=0.25 tol=1.2
2024-12-08 07:10:16,576 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=73.9 pTM=0.71 ipTM=0.267 tol=0.666
2024-12-08 07:10:34,394 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=74 pTM=0.709 ipTM=0.28 tol=0.476
2024-12-08 07:10:34,395 alphafold2_multimer_v3_model_1_seed_000 took 266.1s (6 recycles)
2024-12-08 07:10:52,846 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.2 pTM=0.686 ipTM=0.235
2024-12-08 07:11:10,666 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=71.9 pTM=0.675 ipTM=0.238 tol=4.36
2024-12-08 07:11:28,528 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=73.3 pTM=0.675 ipTM=0.245 tol=3.66
2024-12-08 07:11:46,356 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74.1 pTM=0.68 ipTM=0.219 tol=0.754
2024-12-08 07:12:04,217 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74 pTM=0.679 ipTM=0.216 tol=0.895
2024-12-08 07:12:22,096 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.3 pTM=0.684 ipTM=0.24 tol=1.42
2024-12-08 07:12:39,947 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.8 pTM=0.688 ipTM=0.232 tol=0.797
2024-12-08 07:12:57,815 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.6 pTM=0.688 ipTM=0.227 tol=0.479
2024-12-08 07:12:57,816 alphafold2_multimer_v3_model_2_seed_000 took 142.8s (7 recycles)
2024-12-08 07:13:16,281 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.6 pTM=0.673 ipTM=0.201
2024-12-08 07:13:34,141 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.9 pTM=0.684 ipTM=0.265 tol=3.82
2024-12-08 07:13:52,072 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.8 pTM=0.679 ipTM=0.21 tol=1.99
2024-12-08 07:14:09,930 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73 pTM=0.678 ipTM=0.216 tol=0.918
2024-12-08 07:14:27,821 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.2 pTM=0.679 ipTM=0.218 tol=0.707
2024-12-08 07:14:45,685 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.2 pTM=0.68 ipTM=0.208 tol=0.622
2024-12-08 07:15:03,534 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73.1 pTM=0.678 ipTM=0.21 tol=0.82
2024-12-08 07:15:21,424 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73.2 pTM=0.678 ipTM=0.208 tol=0.504
2024-12-08 07:15:39,331 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=72.7 pTM=0.673 ipTM=0.21 tol=0.394
2024-12-08 07:15:39,332 alphafold2_multimer_v3_model_3_seed_000 took 160.9s (8 recycles)
2024-12-08 07:15:57,797 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.1 pTM=0.687 ipTM=0.254
2024-12-08 07:16:15,682 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=72.3 pTM=0.707 ipTM=0.463 tol=7.8
2024-12-08 07:16:33,570 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=72.4 pTM=0.683 ipTM=0.215 tol=5.28
2024-12-08 07:16:51,442 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.8 pTM=0.679 ipTM=0.206 tol=1.26
2024-12-08 07:17:09,312 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.9 pTM=0.679 ipTM=0.198 tol=1.08
2024-12-08 07:17:27,162 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73.1 pTM=0.682 ipTM=0.196 tol=0.664
2024-12-08 07:17:45,027 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.1 pTM=0.678 ipTM=0.192 tol=0.941
2024-12-08 07:18:02,880 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.4 pTM=0.682 ipTM=0.191 tol=0.548
2024-12-08 07:18:20,727 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=73 pTM=0.677 ipTM=0.191 tol=0.873
2024-12-08 07:18:38,613 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.6 pTM=0.687 ipTM=0.197 tol=1.07
2024-12-08 07:18:56,459 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.2 pTM=0.681 ipTM=0.191 tol=0.775
2024-12-08 07:19:14,308 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=73.6 pTM=0.688 ipTM=0.199 tol=0.809
2024-12-08 07:19:32,149 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.4 pTM=0.68 ipTM=0.191 tol=0.989
2024-12-08 07:19:49,999 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.4 pTM=0.685 ipTM=0.188 tol=1.07
2024-12-08 07:20:07,831 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.4 pTM=0.681 ipTM=0.189 tol=0.712
2024-12-08 07:20:25,660 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73.6 pTM=0.687 ipTM=0.194 tol=0.858
2024-12-08 07:20:43,489 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.2 pTM=0.682 ipTM=0.192 tol=1.36
2024-12-08 07:21:01,315 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.5 pTM=0.685 ipTM=0.192 tol=0.714
2024-12-08 07:21:19,145 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=73.1 pTM=0.68 ipTM=0.192 tol=0.693
2024-12-08 07:21:36,952 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=73.5 pTM=0.686 ipTM=0.197 tol=0.672
2024-12-08 07:21:54,774 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=73.4 pTM=0.684 ipTM=0.19 tol=0.769
2024-12-08 07:22:12,596 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=73.4 pTM=0.687 ipTM=0.198 tol=0.883
2024-12-08 07:22:30,425 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=73.6 pTM=0.686 ipTM=0.189 tol=0.705
2024-12-08 07:22:48,257 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73.4 pTM=0.686 ipTM=0.196 tol=0.632
2024-12-08 07:23:06,080 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=73.1 pTM=0.681 ipTM=0.192 tol=0.649
2024-12-08 07:23:23,897 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=73.5 pTM=0.686 ipTM=0.2 tol=0.68
2024-12-08 07:23:41,722 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=73.3 pTM=0.682 ipTM=0.191 tol=0.954
2024-12-08 07:23:59,545 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73.3 pTM=0.684 ipTM=0.194 tol=1.12
2024-12-08 07:24:17,355 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=72.9 pTM=0.68 ipTM=0.19 tol=0.608
2024-12-08 07:24:35,183 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73.4 pTM=0.684 ipTM=0.202 tol=1.03
2024-12-08 07:24:52,999 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=73.4 pTM=0.683 ipTM=0.195 tol=0.571
2024-12-08 07:24:53,000 alphafold2_multimer_v3_model_4_seed_000 took 553.1s (30 recycles)
2024-12-08 07:25:11,430 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.2 pTM=0.675 ipTM=0.204
2024-12-08 07:25:29,264 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.2 pTM=0.68 ipTM=0.255 tol=4.84
2024-12-08 07:25:47,085 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=70.8 pTM=0.669 ipTM=0.193 tol=2.03
2024-12-08 07:26:04,901 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.5 pTM=0.678 ipTM=0.193 tol=1.27
2024-12-08 07:26:22,714 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.3 pTM=0.676 ipTM=0.195 tol=1.06
2024-12-08 07:26:40,545 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.3 pTM=0.678 ipTM=0.184 tol=0.866
2024-12-08 07:26:58,369 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.4 pTM=0.677 ipTM=0.179 tol=0.927
2024-12-08 07:27:16,178 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72.8 pTM=0.678 ipTM=0.178 tol=1.1
2024-12-08 07:27:33,998 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=72.3 pTM=0.674 ipTM=0.177 tol=0.871
2024-12-08 07:27:51,832 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.6 pTM=0.678 ipTM=0.179 tol=0.53
2024-12-08 07:28:09,641 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.2 pTM=0.673 ipTM=0.175 tol=0.504
2024-12-08 07:28:27,450 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=72.9 pTM=0.679 ipTM=0.176 tol=0.841
2024-12-08 07:28:45,260 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=72.1 pTM=0.671 ipTM=0.174 tol=0.746
2024-12-08 07:29:03,049 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=72.4 pTM=0.676 ipTM=0.171 tol=0.687
2024-12-08 07:29:20,823 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=72.4 pTM=0.675 ipTM=0.178 tol=0.708
2024-12-08 07:29:38,597 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=72.8 pTM=0.679 ipTM=0.176 tol=0.753
2024-12-08 07:29:56,379 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=72.1 pTM=0.672 ipTM=0.172 tol=0.501
2024-12-08 07:30:14,151 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=72.5 pTM=0.676 ipTM=0.174 tol=0.621
2024-12-08 07:30:31,905 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=72.4 pTM=0.673 ipTM=0.176 tol=0.889
2024-12-08 07:30:49,679 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=72.8 pTM=0.681 ipTM=0.178 tol=0.687
2024-12-08 07:31:07,449 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=72.4 pTM=0.674 ipTM=0.173 tol=0.542
2024-12-08 07:31:25,213 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=72.3 pTM=0.676 ipTM=0.173 tol=0.51
2024-12-08 07:31:42,970 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=72.4 pTM=0.675 ipTM=0.173 tol=0.723
2024-12-08 07:32:00,727 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=72.8 pTM=0.677 ipTM=0.172 tol=0.664
2024-12-08 07:32:18,495 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=72.3 pTM=0.672 ipTM=0.17 tol=0.564
2024-12-08 07:32:36,245 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=72.4 pTM=0.675 ipTM=0.172 tol=0.607
2024-12-08 07:32:54,010 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=72.4 pTM=0.673 ipTM=0.172 tol=0.394
2024-12-08 07:32:54,011 alphafold2_multimer_v3_model_5_seed_000 took 480.4s (26 recycles)
2024-12-08 07:32:54,614 reranking models by 'multimer' metric
2024-12-08 07:32:57,440 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 07:33:30,772 Relaxation took 36.2s
2024-12-08 07:33:30,772 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74 pTM=0.709 ipTM=0.28
2024-12-08 07:34:03,271 Relaxation took 32.5s
2024-12-08 07:34:03,271 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.6 pTM=0.688 ipTM=0.227
2024-12-08 07:34:40,190 Relaxation took 36.9s
2024-12-08 07:34:40,190 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.7 pTM=0.673 ipTM=0.21
2024-12-08 07:36:11,976 Relaxation took 91.8s
2024-12-08 07:36:11,976 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73.4 pTM=0.683 ipTM=0.195
2024-12-08 07:36:44,057 Relaxation took 32.1s
2024-12-08 07:36:44,057 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.4 pTM=0.673 ipTM=0.172
2024-12-08 07:36:45,976 Done