2024-12-08 08:28:20,700 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 08:28:21,029 Running on GPU
2024-12-08 08:28:24,954 Found 6 citations for tools or databases
2024-12-08 08:28:24,954 Query 1/1: RNF34_HSPA2 (length 1011)
2024-12-08 08:28:25,251 Sleeping for 9s. Reason: PENDING
2024-12-08 08:28:34,507 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:28:41,776 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:28:51,041 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:29:01,299 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:29:07,551 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:29:16,807 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:29:26,064 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:29:31,319 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:29:41,576 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:29:48,847 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:29:57,106 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:30:07,366 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:30:12,624 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:30:18,884 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:30:27,145 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:30:37,410 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:30:47,670 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:30:52,940 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:30:59,198 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:31:08,456 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:31:17,713 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:31:22,970 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:31:31,230 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:31:39,495 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:31:47,752 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:31:55,015 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:32:01,270 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:32:13,165 Sleeping for 8s. Reason: PENDING
2024-12-08 08:32:21,431 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:32:30,688 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:32:38,952 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:32:46,211 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:32:51,469 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:33:01,731 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:33:10,985 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:33:19,241 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:33:25,497 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:33:35,755 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:33:43,012 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:33:49,273 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:33:59,533 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:34:05,790 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:34:11,059 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:34:19,321 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:34:28,577 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:34:35,831 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:34:50,790 Setting max_seq=508, max_extra_seq=2048
2024-12-08 08:37:53,903 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=65.5 pTM=0.559 ipTM=0.191
2024-12-08 08:38:17,207 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=68.5 pTM=0.613 ipTM=0.42 tol=18.5
2024-12-08 08:38:40,633 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.1 pTM=0.567 ipTM=0.194 tol=18.3
2024-12-08 08:39:04,111 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=68.1 pTM=0.604 ipTM=0.445 tol=18.6
2024-12-08 08:39:27,723 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=68.4 pTM=0.561 ipTM=0.185 tol=7.27
2024-12-08 08:39:51,368 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=68.8 pTM=0.567 ipTM=0.217 tol=5.08
2024-12-08 08:40:15,065 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.8 pTM=0.564 ipTM=0.217 tol=4.77
2024-12-08 08:40:38,777 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=68.7 pTM=0.597 ipTM=0.378 tol=5.24
2024-12-08 08:41:02,564 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=68.4 pTM=0.557 ipTM=0.182 tol=14.5
2024-12-08 08:41:26,303 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=70.1 pTM=0.614 ipTM=0.457 tol=13.9
2024-12-08 08:41:50,066 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=70.2 pTM=0.598 ipTM=0.432 tol=3.25
2024-12-08 08:42:13,842 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=70.6 pTM=0.609 ipTM=0.459 tol=3.24
2024-12-08 08:42:37,600 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=70.5 pTM=0.603 ipTM=0.444 tol=2.71
2024-12-08 08:43:01,352 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=70.1 pTM=0.605 ipTM=0.478 tol=1.76
2024-12-08 08:43:25,111 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=70.4 pTM=0.603 ipTM=0.462 tol=1.86
2024-12-08 08:43:48,865 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=70.1 pTM=0.602 ipTM=0.46 tol=1.49
2024-12-08 08:44:12,633 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=69.9 pTM=0.595 ipTM=0.432 tol=2.08
2024-12-08 08:44:36,415 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=70.1 pTM=0.6 ipTM=0.454 tol=2.05
2024-12-08 08:45:00,201 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=70.1 pTM=0.598 ipTM=0.44 tol=1.45
2024-12-08 08:45:23,994 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=69.8 pTM=0.603 ipTM=0.472 tol=2.43
2024-12-08 08:45:47,775 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=70.3 pTM=0.605 ipTM=0.472 tol=2.87
2024-12-08 08:46:11,559 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=69.9 pTM=0.6 ipTM=0.469 tol=2.06
2024-12-08 08:46:35,321 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=69.8 pTM=0.592 ipTM=0.438 tol=1.1
2024-12-08 08:46:59,103 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=69.9 pTM=0.6 ipTM=0.467 tol=1.92
2024-12-08 08:47:22,847 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=70 pTM=0.598 ipTM=0.451 tol=2.65
2024-12-08 08:47:46,600 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=69.9 pTM=0.604 ipTM=0.478 tol=3.56
2024-12-08 08:48:10,354 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=70.1 pTM=0.6 ipTM=0.462 tol=3.14
2024-12-08 08:48:34,103 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=70.1 pTM=0.604 ipTM=0.483 tol=1.44
2024-12-08 08:48:57,859 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=70.2 pTM=0.604 ipTM=0.471 tol=1.51
2024-12-08 08:49:21,617 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=70.1 pTM=0.6 ipTM=0.458 tol=1.16
2024-12-08 08:49:45,366 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=69.9 pTM=0.591 ipTM=0.442 tol=1.64
2024-12-08 08:49:45,367 alphafold2_multimer_v3_model_1_seed_000 took 889.4s (30 recycles)
2024-12-08 08:50:09,812 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=66.6 pTM=0.599 ipTM=0.18
2024-12-08 08:50:33,603 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=67.4 pTM=0.576 ipTM=0.252 tol=20.9
2024-12-08 08:50:57,391 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=69.4 pTM=0.574 ipTM=0.273 tol=10.1
2024-12-08 08:51:21,173 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=70.3 pTM=0.612 ipTM=0.507 tol=8.84
2024-12-08 08:51:44,995 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=70.8 pTM=0.608 ipTM=0.472 tol=5.02
2024-12-08 08:52:08,804 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=70.8 pTM=0.617 ipTM=0.499 tol=3.86
2024-12-08 08:52:32,628 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.2 pTM=0.613 ipTM=0.463 tol=2.25
2024-12-08 08:52:56,454 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.1 pTM=0.614 ipTM=0.48 tol=2.36
2024-12-08 08:53:20,307 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=71.1 pTM=0.6 ipTM=0.42 tol=2.15
2024-12-08 08:53:44,176 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=71.2 pTM=0.611 ipTM=0.444 tol=1.56
2024-12-08 08:54:08,042 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.9 pTM=0.596 ipTM=0.414 tol=1.29
2024-12-08 08:54:31,898 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=70.8 pTM=0.596 ipTM=0.406 tol=0.872
2024-12-08 08:54:55,745 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=70.7 pTM=0.595 ipTM=0.389 tol=1.55
2024-12-08 08:55:19,574 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=70.7 pTM=0.604 ipTM=0.389 tol=2.47
2024-12-08 08:55:43,391 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=70.8 pTM=0.597 ipTM=0.383 tol=1.73
2024-12-08 08:56:07,196 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=70.4 pTM=0.592 ipTM=0.369 tol=0.97
2024-12-08 08:56:31,005 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=70.2 pTM=0.587 ipTM=0.361 tol=1.4
2024-12-08 08:56:54,830 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=70.2 pTM=0.582 ipTM=0.361 tol=2.72
2024-12-08 08:57:18,671 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=70.2 pTM=0.574 ipTM=0.312 tol=2.01
2024-12-08 08:57:42,492 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=70.5 pTM=0.591 ipTM=0.382 tol=2.33
2024-12-08 08:58:06,331 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=70.7 pTM=0.587 ipTM=0.344 tol=2.07
2024-12-08 08:58:30,153 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=71.1 pTM=0.606 ipTM=0.421 tol=3.37
2024-12-08 08:58:53,973 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=70.2 pTM=0.572 ipTM=0.306 tol=3.01
2024-12-08 08:59:17,781 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=69.9 pTM=0.577 ipTM=0.342 tol=20.2
2024-12-08 08:59:41,593 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=70.8 pTM=0.597 ipTM=0.436 tol=20.2
2024-12-08 09:00:05,406 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=70.9 pTM=0.607 ipTM=0.483 tol=3.82
2024-12-08 09:00:29,238 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=71.2 pTM=0.609 ipTM=0.502 tol=1.52
2024-12-08 09:00:53,060 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=71.1 pTM=0.603 ipTM=0.481 tol=1.98
2024-12-08 09:01:16,891 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=70.9 pTM=0.601 ipTM=0.476 tol=1.73
2024-12-08 09:01:40,731 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=71.1 pTM=0.605 ipTM=0.463 tol=1.59
2024-12-08 09:02:04,570 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=70.9 pTM=0.599 ipTM=0.467 tol=1.42
2024-12-08 09:02:04,571 alphafold2_multimer_v3_model_2_seed_000 took 738.6s (30 recycles)
2024-12-08 09:02:29,156 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.6 pTM=0.6 ipTM=0.194
2024-12-08 09:02:53,106 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.1 pTM=0.641 ipTM=0.489 tol=21.6
2024-12-08 09:03:17,062 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=70.2 pTM=0.586 ipTM=0.167 tol=18.2
2024-12-08 09:03:41,020 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69.8 pTM=0.634 ipTM=0.521 tol=21.2
2024-12-08 09:04:04,994 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.9 pTM=0.615 ipTM=0.405 tol=16.8
2024-12-08 09:04:28,922 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=71.8 pTM=0.635 ipTM=0.475 tol=7.34
2024-12-08 09:04:52,842 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=71.6 pTM=0.634 ipTM=0.474 tol=17.4
2024-12-08 09:05:16,850 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=72.2 pTM=0.645 ipTM=0.556 tol=17.7
2024-12-08 09:05:40,873 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=72.4 pTM=0.647 ipTM=0.64 tol=17
2024-12-08 09:06:04,916 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=72.8 pTM=0.649 ipTM=0.64 tol=12.6
2024-12-08 09:06:28,941 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=72.4 pTM=0.646 ipTM=0.644 tol=11.7
2024-12-08 09:06:52,952 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=72.5 pTM=0.653 ipTM=0.629 tol=12.6
2024-12-08 09:07:16,943 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=72.6 pTM=0.653 ipTM=0.642 tol=11.5
2024-12-08 09:07:40,974 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=72.4 pTM=0.654 ipTM=0.634 tol=16
2024-12-08 09:08:05,007 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=72.4 pTM=0.648 ipTM=0.604 tol=16.2
2024-12-08 09:08:29,032 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=72.4 pTM=0.651 ipTM=0.627 tol=14.7
2024-12-08 09:08:53,077 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=72.1 pTM=0.648 ipTM=0.632 tol=14.1
2024-12-08 09:09:17,142 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=72.5 pTM=0.65 ipTM=0.63 tol=13.1
2024-12-08 09:09:41,176 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=72.3 pTM=0.644 ipTM=0.623 tol=13.4
2024-12-08 09:10:05,245 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=72.4 pTM=0.646 ipTM=0.607 tol=13.8
2024-12-08 09:10:29,258 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=72.2 pTM=0.645 ipTM=0.634 tol=14
2024-12-08 09:10:53,283 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=72.4 pTM=0.647 ipTM=0.622 tol=16.8
2024-12-08 09:11:17,253 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=72.4 pTM=0.645 ipTM=0.62 tol=16.4
2024-12-08 09:11:41,215 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=72.5 pTM=0.649 ipTM=0.622 tol=16.1
2024-12-08 09:12:05,155 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=72.4 pTM=0.647 ipTM=0.631 tol=16.4
2024-12-08 09:12:29,116 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.4 pTM=0.648 ipTM=0.634 tol=15.9
2024-12-08 09:12:53,053 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=72.4 pTM=0.647 ipTM=0.604 tol=15.9
2024-12-08 09:13:17,022 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72.3 pTM=0.646 ipTM=0.616 tol=10.2
2024-12-08 09:13:40,965 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=72.1 pTM=0.643 ipTM=0.557 tol=10.4
2024-12-08 09:14:04,939 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=72.4 pTM=0.648 ipTM=0.599 tol=17.4
2024-12-08 09:14:28,882 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=72.4 pTM=0.647 ipTM=0.613 tol=17.6
2024-12-08 09:14:28,883 alphafold2_multimer_v3_model_3_seed_000 took 743.7s (30 recycles)
2024-12-08 09:14:53,399 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=67.2 pTM=0.618 ipTM=0.251
2024-12-08 09:15:17,342 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=68.6 pTM=0.601 ipTM=0.197 tol=16.9
2024-12-08 09:15:41,296 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=69.2 pTM=0.619 ipTM=0.419 tol=18.3
2024-12-08 09:16:05,232 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=68.9 pTM=0.586 ipTM=0.171 tol=10.5
2024-12-08 09:16:29,167 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68.7 pTM=0.629 ipTM=0.495 tol=11.8
2024-12-08 09:16:53,158 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=69.1 pTM=0.583 ipTM=0.206 tol=14.1
2024-12-08 09:17:17,121 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=69 pTM=0.598 ipTM=0.292 tol=6.09
2024-12-08 09:17:41,053 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=69.1 pTM=0.599 ipTM=0.248 tol=16.8
2024-12-08 09:18:05,009 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.3 pTM=0.623 ipTM=0.462 tol=19.4
2024-12-08 09:18:28,917 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=68.9 pTM=0.592 ipTM=0.202 tol=20.4
2024-12-08 09:18:52,815 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=68.9 pTM=0.596 ipTM=0.275 tol=8.15
2024-12-08 09:19:16,711 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69.2 pTM=0.593 ipTM=0.219 tol=10.7
2024-12-08 09:19:40,630 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=69.8 pTM=0.607 ipTM=0.4 tol=9.01
2024-12-08 09:20:04,531 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=70.2 pTM=0.618 ipTM=0.376 tol=5.07
2024-12-08 09:20:28,475 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=71 pTM=0.625 ipTM=0.519 tol=6.88
2024-12-08 09:20:52,421 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=70.9 pTM=0.63 ipTM=0.486 tol=4.51
2024-12-08 09:21:16,397 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=71.1 pTM=0.625 ipTM=0.52 tol=5.22
2024-12-08 09:21:40,361 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=70.9 pTM=0.633 ipTM=0.515 tol=15.5
2024-12-08 09:22:04,309 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=70.2 pTM=0.628 ipTM=0.487 tol=4.1
2024-12-08 09:22:28,276 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=70.6 pTM=0.632 ipTM=0.481 tol=4.99
2024-12-08 09:22:52,216 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=70.2 pTM=0.62 ipTM=0.464 tol=6.9
2024-12-08 09:23:16,144 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=70.2 pTM=0.62 ipTM=0.442 tol=6.63
2024-12-08 09:23:40,077 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=69.8 pTM=0.613 ipTM=0.423 tol=2.55
2024-12-08 09:24:04,005 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=69.7 pTM=0.618 ipTM=0.427 tol=4.59
2024-12-08 09:24:27,897 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=69.6 pTM=0.615 ipTM=0.417 tol=5.93
2024-12-08 09:24:51,817 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=69.2 pTM=0.604 ipTM=0.404 tol=1.88
2024-12-08 09:25:15,732 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=69.1 pTM=0.613 ipTM=0.426 tol=2.49
2024-12-08 09:25:39,649 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=69.4 pTM=0.613 ipTM=0.421 tol=6.3
2024-12-08 09:26:03,555 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=68.9 pTM=0.609 ipTM=0.428 tol=5.46
2024-12-08 09:26:27,486 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=69.3 pTM=0.617 ipTM=0.441 tol=1.71
2024-12-08 09:26:51,408 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=69.1 pTM=0.614 ipTM=0.424 tol=4.86
2024-12-08 09:26:51,409 alphafold2_multimer_v3_model_4_seed_000 took 741.9s (30 recycles)
2024-12-08 09:27:16,012 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.1 pTM=0.589 ipTM=0.161
2024-12-08 09:27:40,040 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=70.8 pTM=0.62 ipTM=0.329 tol=21.9
2024-12-08 09:28:04,062 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=69.8 pTM=0.587 ipTM=0.17 tol=15.1
2024-12-08 09:28:28,084 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=70.1 pTM=0.594 ipTM=0.193 tol=8.77
2024-12-08 09:28:52,064 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69.7 pTM=0.603 ipTM=0.23 tol=8.01
2024-12-08 09:29:16,043 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=69.8 pTM=0.604 ipTM=0.193 tol=3.35
2024-12-08 09:29:40,012 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=69.6 pTM=0.603 ipTM=0.182 tol=4.04
2024-12-08 09:30:03,970 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=69.2 pTM=0.597 ipTM=0.192 tol=3.6
2024-12-08 09:30:27,945 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=70 pTM=0.595 ipTM=0.201 tol=11
2024-12-08 09:30:51,933 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=69.7 pTM=0.604 ipTM=0.272 tol=15.5
2024-12-08 09:31:15,886 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=69.7 pTM=0.607 ipTM=0.23 tol=4.34
2024-12-08 09:31:39,840 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=70.1 pTM=0.616 ipTM=0.309 tol=4.23
2024-12-08 09:32:03,811 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=70.7 pTM=0.601 ipTM=0.179 tol=5.48
2024-12-08 09:32:27,808 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=70.1 pTM=0.623 ipTM=0.378 tol=13.9
2024-12-08 09:32:51,856 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=70.8 pTM=0.613 ipTM=0.308 tol=15.5
2024-12-08 09:33:15,881 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=70.6 pTM=0.609 ipTM=0.22 tol=5.31
2024-12-08 09:33:39,922 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=70.1 pTM=0.614 ipTM=0.298 tol=14.3
2024-12-08 09:34:03,976 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=69.4 pTM=0.602 ipTM=0.208 tol=18
2024-12-08 09:34:28,045 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=70 pTM=0.601 ipTM=0.159 tol=7.23
2024-12-08 09:34:52,104 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71 pTM=0.612 ipTM=0.312 tol=17.7
2024-12-08 09:35:16,153 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=71.5 pTM=0.624 ipTM=0.381 tol=3.14
2024-12-08 09:35:40,220 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.8 pTM=0.619 ipTM=0.37 tol=3.02
2024-12-08 09:36:04,298 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=71.5 pTM=0.613 ipTM=0.351 tol=3.05
2024-12-08 09:36:28,360 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=71.3 pTM=0.611 ipTM=0.37 tol=3.45
2024-12-08 09:36:52,429 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=71.4 pTM=0.616 ipTM=0.385 tol=3.78
2024-12-08 09:37:16,498 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=71.7 pTM=0.627 ipTM=0.43 tol=2.95
2024-12-08 09:37:40,554 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=72 pTM=0.641 ipTM=0.527 tol=2.05
2024-12-08 09:38:04,613 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=71.9 pTM=0.641 ipTM=0.543 tol=2.25
2024-12-08 09:38:28,649 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=72.4 pTM=0.648 ipTM=0.563 tol=1.62
2024-12-08 09:38:52,669 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=72.2 pTM=0.651 ipTM=0.581 tol=1.23
2024-12-08 09:39:16,708 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=72.3 pTM=0.653 ipTM=0.608 tol=1.27
2024-12-08 09:39:16,709 alphafold2_multimer_v3_model_5_seed_000 took 744.7s (30 recycles)
2024-12-08 09:39:17,342 reranking models by 'multimer' metric
2024-12-08 09:39:20,205 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 09:40:38,713 Relaxation took 81.4s
2024-12-08 09:40:38,713 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.4 pTM=0.647 ipTM=0.613
2024-12-08 09:41:23,278 Relaxation took 44.6s
2024-12-08 09:41:23,278 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.3 pTM=0.653 ipTM=0.608
2024-12-08 09:42:39,805 Relaxation took 76.5s
2024-12-08 09:42:39,805 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=70.9 pTM=0.599 ipTM=0.467
2024-12-08 09:44:10,188 Relaxation took 90.4s
2024-12-08 09:44:10,188 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=69.9 pTM=0.591 ipTM=0.442
2024-12-08 09:45:23,086 Relaxation took 72.9s
2024-12-08 09:45:23,086 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=69.1 pTM=0.614 ipTM=0.424
2024-12-08 09:45:25,239 Done