2024-12-08 08:30:32,892 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 08:30:33,204 Running on GPU
2024-12-08 08:30:36,225 Found 6 citations for tools or databases
2024-12-08 08:30:36,225 Query 1/1: RNF40_COG6 (length 1658)
2024-12-08 08:30:36,495 Sleeping for 7s. Reason: PENDING
2024-12-08 08:30:43,762 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:30:53,023 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:31:00,279 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:31:05,531 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:31:15,787 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:31:22,042 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:31:27,298 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:31:32,553 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:31:37,806 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:31:45,062 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:31:50,316 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:31:56,577 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:32:02,843 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:32:08,098 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:32:18,358 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:32:30,158 Sleeping for 10s. Reason: PENDING
2024-12-08 08:32:40,416 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:32:47,674 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:32:54,927 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:33:04,189 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:33:10,448 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:33:20,707 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:33:26,967 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:33:34,230 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:33:40,486 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:33:54,846 Setting max_seq=508, max_extra_seq=2048
2024-12-08 08:37:55,309 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=60.6 pTM=0.387 ipTM=0.165
2024-12-08 08:39:23,292 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=60.4 pTM=0.387 ipTM=0.172 tol=27.1
2024-12-08 08:40:51,284 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.3 pTM=0.386 ipTM=0.175 tol=27.5
2024-12-08 08:42:19,349 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=60.3 pTM=0.384 ipTM=0.174 tol=16.8
2024-12-08 08:43:47,439 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.1 pTM=0.38 ipTM=0.171 tol=11.6
2024-12-08 08:45:15,549 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=60.2 pTM=0.381 ipTM=0.173 tol=10.6
2024-12-08 08:46:43,696 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=60.1 pTM=0.381 ipTM=0.172 tol=14.3
2024-12-08 08:48:11,828 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=59.7 pTM=0.382 ipTM=0.171 tol=10.1
2024-12-08 08:49:39,866 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=59.9 pTM=0.382 ipTM=0.172 tol=18.6
2024-12-08 08:51:07,867 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.4 pTM=0.383 ipTM=0.173 tol=16.1
2024-12-08 08:52:35,833 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=60.2 pTM=0.384 ipTM=0.173 tol=8.64
2024-12-08 08:54:03,752 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=61.1 pTM=0.385 ipTM=0.174 tol=9.03
2024-12-08 08:55:31,675 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=61.2 pTM=0.388 ipTM=0.175 tol=7.02
2024-12-08 08:56:59,579 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.2 pTM=0.391 ipTM=0.186 tol=7.7
2024-12-08 08:58:27,444 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61 pTM=0.393 ipTM=0.195 tol=7.83
2024-12-08 08:59:55,314 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=61 pTM=0.393 ipTM=0.202 tol=4.55
2024-12-08 09:01:23,158 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60.9 pTM=0.392 ipTM=0.188 tol=6.97
2024-12-08 09:02:51,095 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=61 pTM=0.392 ipTM=0.193 tol=6.45
2024-12-08 09:04:19,017 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=61.1 pTM=0.394 ipTM=0.194 tol=5.45
2024-12-08 09:05:46,931 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=61 pTM=0.395 ipTM=0.198 tol=6.62
2024-12-08 09:07:14,796 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=60.8 pTM=0.395 ipTM=0.191 tol=8.16
2024-12-08 09:08:42,714 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61 pTM=0.394 ipTM=0.202 tol=9.09
2024-12-08 09:10:10,644 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=61.1 pTM=0.395 ipTM=0.204 tol=7.12
2024-12-08 09:11:38,602 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=60.9 pTM=0.39 ipTM=0.182 tol=9.34
2024-12-08 09:13:06,647 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.6 pTM=0.384 ipTM=0.173 tol=6.52
2024-12-08 09:14:34,643 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=60.9 pTM=0.388 ipTM=0.177 tol=4.31
2024-12-08 09:16:02,651 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.3 pTM=0.384 ipTM=0.172 tol=6.93
2024-12-08 09:17:30,725 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=60.1 pTM=0.379 ipTM=0.171 tol=20
2024-12-08 09:18:58,785 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=60.1 pTM=0.378 ipTM=0.172 tol=13.7
2024-12-08 09:20:26,782 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=60.6 pTM=0.388 ipTM=0.192 tol=20.6
2024-12-08 09:21:54,781 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=59.5 pTM=0.383 ipTM=0.181 tol=13.5
2024-12-08 09:21:54,783 alphafold2_multimer_v3_model_1_seed_000 took 2874.9s (30 recycles)
2024-12-08 09:23:24,568 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=59.1 pTM=0.379 ipTM=0.163
2024-12-08 09:24:52,670 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=59.9 pTM=0.385 ipTM=0.174 tol=19.5
2024-12-08 09:26:20,737 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=58.4 pTM=0.387 ipTM=0.175 tol=51.4
2024-12-08 09:27:48,863 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=58.2 pTM=0.384 ipTM=0.17 tol=26.7
2024-12-08 09:29:17,035 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=58.2 pTM=0.382 ipTM=0.169 tol=55.1
2024-12-08 09:30:45,159 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60 pTM=0.388 ipTM=0.192 tol=18.6
2024-12-08 09:32:13,308 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=59.8 pTM=0.39 ipTM=0.183 tol=14.8
2024-12-08 09:33:41,450 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60 pTM=0.386 ipTM=0.173 tol=16.2
2024-12-08 09:35:09,568 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=59.6 pTM=0.383 ipTM=0.169 tol=12.3
2024-12-08 09:36:37,703 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=59.4 pTM=0.38 ipTM=0.166 tol=9.59
2024-12-08 09:38:05,844 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=59 pTM=0.38 ipTM=0.167 tol=13.1
2024-12-08 09:39:34,097 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=58.9 pTM=0.382 ipTM=0.165 tol=23.7
2024-12-08 09:41:02,319 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=59.1 pTM=0.383 ipTM=0.165 tol=17
2024-12-08 09:42:30,568 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=58.4 pTM=0.385 ipTM=0.167 tol=33.9
2024-12-08 09:43:58,694 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=57.6 pTM=0.388 ipTM=0.17 tol=22.7
2024-12-08 09:45:26,830 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=57.6 pTM=0.385 ipTM=0.167 tol=17.9
2024-12-08 09:46:55,051 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=58.8 pTM=0.378 ipTM=0.163 tol=34.9
2024-12-08 09:48:23,255 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=59.7 pTM=0.382 ipTM=0.166 tol=34
2024-12-08 09:49:51,441 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=58.8 pTM=0.383 ipTM=0.169 tol=18.7
2024-12-08 09:51:19,536 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=58.8 pTM=0.381 ipTM=0.167 tol=11
2024-12-08 09:52:47,712 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=58.5 pTM=0.379 ipTM=0.163 tol=43.3
2024-12-08 09:54:15,923 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=58.1 pTM=0.385 ipTM=0.168 tol=36.6
2024-12-08 09:55:44,236 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=57.2 pTM=0.377 ipTM=0.16 tol=32.7
2024-12-08 09:57:12,525 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=56.3 pTM=0.38 ipTM=0.163 tol=26.3
2024-12-08 09:58:40,689 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=58.5 pTM=0.38 ipTM=0.163 tol=15.1
2024-12-08 10:00:08,897 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=58.6 pTM=0.382 ipTM=0.166 tol=21.4
2024-12-08 10:01:37,015 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=59.2 pTM=0.385 ipTM=0.168 tol=28.5
2024-12-08 10:03:05,072 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=58.5 pTM=0.384 ipTM=0.167 tol=20.3
2024-12-08 10:04:33,210 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=57.2 pTM=0.381 ipTM=0.164 tol=18.2
2024-12-08 10:06:01,401 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=57.8 pTM=0.382 ipTM=0.164 tol=32.1
2024-12-08 10:07:29,552 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=57.6 pTM=0.383 ipTM=0.168 tol=26.3
2024-12-08 10:07:29,554 alphafold2_multimer_v3_model_2_seed_000 took 2733.1s (30 recycles)
2024-12-08 10:08:59,434 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=63.8 pTM=0.379 ipTM=0.16
2024-12-08 10:10:27,386 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=62.2 pTM=0.395 ipTM=0.191 tol=32.9
2024-12-08 10:11:55,334 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=62.1 pTM=0.394 ipTM=0.198 tol=10.4
2024-12-08 10:13:23,200 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=62.3 pTM=0.397 ipTM=0.203 tol=7.06
2024-12-08 10:14:51,123 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=61.8 pTM=0.39 ipTM=0.2 tol=6.8
2024-12-08 10:16:18,978 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=62.5 pTM=0.396 ipTM=0.2 tol=6.5
2024-12-08 10:17:46,788 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=63.1 pTM=0.4 ipTM=0.232 tol=4.7
2024-12-08 10:19:14,600 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=63.1 pTM=0.409 ipTM=0.227 tol=6.03
2024-12-08 10:20:42,393 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=63.3 pTM=0.412 ipTM=0.248 tol=4.17
2024-12-08 10:22:10,176 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=62.8 pTM=0.417 ipTM=0.244 tol=4.37
2024-12-08 10:23:37,941 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=63.2 pTM=0.408 ipTM=0.245 tol=5.66
2024-12-08 10:25:05,659 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=63.3 pTM=0.421 ipTM=0.251 tol=5.37
2024-12-08 10:26:33,452 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=63.1 pTM=0.406 ipTM=0.237 tol=4.55
2024-12-08 10:28:01,200 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=63.2 pTM=0.425 ipTM=0.256 tol=4.65
2024-12-08 10:29:29,006 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=62.7 pTM=0.406 ipTM=0.233 tol=5.03
2024-12-08 10:30:56,771 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62.7 pTM=0.419 ipTM=0.259 tol=3.93
2024-12-08 10:32:24,718 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=62.2 pTM=0.395 ipTM=0.212 tol=6.66
2024-12-08 10:33:52,653 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=62 pTM=0.405 ipTM=0.228 tol=5.09
2024-12-08 10:35:20,534 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61.9 pTM=0.402 ipTM=0.244 tol=7.56
2024-12-08 10:36:48,518 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62 pTM=0.396 ipTM=0.205 tol=13.4
2024-12-08 10:38:16,414 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=62.1 pTM=0.403 ipTM=0.279 tol=12.6
2024-12-08 10:39:44,421 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=61.3 pTM=0.395 ipTM=0.203 tol=11.8
2024-12-08 10:41:12,331 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=62.3 pTM=0.402 ipTM=0.302 tol=9.62
2024-12-08 10:42:40,280 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61.7 pTM=0.399 ipTM=0.201 tol=8.45
2024-12-08 10:44:08,098 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=62.9 pTM=0.406 ipTM=0.316 tol=8.69
2024-12-08 10:45:35,951 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=62 pTM=0.4 ipTM=0.207 tol=6.13
2024-12-08 10:47:03,798 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=62.7 pTM=0.408 ipTM=0.272 tol=6.84
2024-12-08 10:48:31,617 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=62.5 pTM=0.403 ipTM=0.245 tol=4.8
2024-12-08 10:49:59,548 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=62.1 pTM=0.394 ipTM=0.191 tol=4.07
2024-12-08 10:51:27,397 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=62.9 pTM=0.4 ipTM=0.232 tol=3.98
2024-12-08 10:52:55,230 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=62.6 pTM=0.407 ipTM=0.287 tol=6.58
2024-12-08 10:52:55,232 alphafold2_multimer_v3_model_3_seed_000 took 2724.0s (30 recycles)
2024-12-08 10:54:25,217 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.1 pTM=0.381 ipTM=0.154
2024-12-08 10:55:53,646 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=56.9 pTM=0.382 ipTM=0.16 tol=30.6
2024-12-08 10:57:22,147 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=57.1 pTM=0.38 ipTM=0.162 tol=16.2
2024-12-08 10:58:50,656 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=56.2 pTM=0.378 ipTM=0.156 tol=14
2024-12-08 11:00:19,192 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55.1 pTM=0.379 ipTM=0.156 tol=15.1
2024-12-08 11:01:47,711 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.8 pTM=0.38 ipTM=0.156 tol=11.5
2024-12-08 11:03:16,277 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=55.5 pTM=0.381 ipTM=0.158 tol=12.8
2024-12-08 11:04:44,812 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.5 pTM=0.38 ipTM=0.156 tol=13.7
2024-12-08 11:06:13,311 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54.7 pTM=0.386 ipTM=0.187 tol=20.1
2024-12-08 11:07:41,841 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=54.1 pTM=0.382 ipTM=0.159 tol=16.9
2024-12-08 11:09:10,317 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=54.3 pTM=0.384 ipTM=0.172 tol=22.9
2024-12-08 11:10:38,801 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=54.9 pTM=0.382 ipTM=0.158 tol=16.7
2024-12-08 11:12:07,292 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=54.2 pTM=0.382 ipTM=0.161 tol=19.4
2024-12-08 11:13:35,719 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=55.1 pTM=0.382 ipTM=0.159 tol=19.9
2024-12-08 11:15:04,126 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=54.8 pTM=0.384 ipTM=0.168 tol=17.4
2024-12-08 11:16:32,524 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.2 pTM=0.384 ipTM=0.164 tol=19.6
2024-12-08 11:18:00,997 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=55.2 pTM=0.382 ipTM=0.158 tol=16.5
2024-12-08 11:19:29,420 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=54.8 pTM=0.381 ipTM=0.175 tol=17.6
2024-12-08 11:20:57,892 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=54.5 pTM=0.382 ipTM=0.16 tol=15.4
2024-12-08 11:22:26,431 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=54.7 pTM=0.38 ipTM=0.155 tol=26.6
2024-12-08 11:23:54,865 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55 pTM=0.383 ipTM=0.215 tol=25.2
2024-12-08 11:25:23,374 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=54.2 pTM=0.383 ipTM=0.159 tol=21
2024-12-08 11:26:51,863 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=54 pTM=0.383 ipTM=0.163 tol=16.2
2024-12-08 11:28:20,355 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=54.8 pTM=0.384 ipTM=0.16 tol=21.9
2024-12-08 11:29:48,784 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=55 pTM=0.389 ipTM=0.23 tol=19.9
2024-12-08 11:31:17,218 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=54.8 pTM=0.387 ipTM=0.18 tol=11.1
2024-12-08 11:32:45,586 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=54.3 pTM=0.385 ipTM=0.18 tol=27.6
2024-12-08 11:34:14,033 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.2 pTM=0.383 ipTM=0.161 tol=17.7
2024-12-08 11:35:42,471 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=54.6 pTM=0.383 ipTM=0.163 tol=18.7
2024-12-08 11:37:11,005 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55 pTM=0.38 ipTM=0.158 tol=18.9
2024-12-08 11:38:39,385 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55 pTM=0.383 ipTM=0.159 tol=17.3
2024-12-08 11:38:39,387 alphafold2_multimer_v3_model_4_seed_000 took 2742.6s (30 recycles)
2024-12-08 11:40:09,422 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=62.2 pTM=0.383 ipTM=0.161
2024-12-08 11:41:37,760 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=61.3 pTM=0.381 ipTM=0.162 tol=37.6
2024-12-08 11:43:05,934 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=60.5 pTM=0.389 ipTM=0.174 tol=31.5
2024-12-08 11:44:34,038 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.8 pTM=0.396 ipTM=0.21 tol=17.5
2024-12-08 11:46:02,090 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=60.9 pTM=0.406 ipTM=0.231 tol=6.78
2024-12-08 11:47:30,115 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.2 pTM=0.416 ipTM=0.289 tol=7.6
2024-12-08 11:48:58,129 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=61.3 pTM=0.42 ipTM=0.273 tol=11.1
2024-12-08 11:50:26,218 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.6 pTM=0.414 ipTM=0.218 tol=10.5
2024-12-08 11:51:54,310 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.3 pTM=0.413 ipTM=0.241 tol=7.71
2024-12-08 11:53:22,367 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=60.2 pTM=0.424 ipTM=0.272 tol=9.03
2024-12-08 11:54:50,501 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=59.6 pTM=0.414 ipTM=0.245 tol=9.57
2024-12-08 11:56:18,651 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60.6 pTM=0.421 ipTM=0.274 tol=19.2
2024-12-08 11:57:46,727 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=60.8 pTM=0.425 ipTM=0.275 tol=12.1
2024-12-08 11:59:14,818 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=60.8 pTM=0.417 ipTM=0.23 tol=14.4
2024-12-08 12:00:42,755 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=61.8 pTM=0.423 ipTM=0.254 tol=19.2
2024-12-08 12:02:10,557 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.1 pTM=0.439 ipTM=0.317 tol=7.64
2024-12-08 12:03:38,354 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.5 pTM=0.437 ipTM=0.319 tol=4.89
2024-12-08 12:05:06,220 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.1 pTM=0.428 ipTM=0.262 tol=6.84
2024-12-08 12:06:34,065 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.1 pTM=0.427 ipTM=0.245 tol=7.33
2024-12-08 12:08:01,836 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.6 pTM=0.435 ipTM=0.285 tol=3.85
2024-12-08 12:09:29,593 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=61.9 pTM=0.424 ipTM=0.258 tol=7.36
2024-12-08 12:10:57,344 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62.6 pTM=0.433 ipTM=0.29 tol=4.52
2024-12-08 12:12:25,032 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=63.1 pTM=0.457 ipTM=0.388 tol=5.97
2024-12-08 12:13:52,749 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=63.5 pTM=0.459 ipTM=0.415 tol=4.07
2024-12-08 12:15:20,486 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=63.2 pTM=0.457 ipTM=0.384 tol=5.36
2024-12-08 12:16:48,258 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.5 pTM=0.444 ipTM=0.318 tol=5.24
2024-12-08 12:18:15,980 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.2 pTM=0.441 ipTM=0.271 tol=6.54
2024-12-08 12:19:43,742 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62 pTM=0.429 ipTM=0.279 tol=7.31
2024-12-08 12:21:11,532 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.3 pTM=0.438 ipTM=0.292 tol=6.58
2024-12-08 12:22:39,371 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=61.4 pTM=0.424 ipTM=0.254 tol=7.35
2024-12-08 12:24:07,172 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.1 pTM=0.439 ipTM=0.321 tol=9.21
2024-12-08 12:24:07,173 alphafold2_multimer_v3_model_5_seed_000 took 2726.2s (30 recycles)
2024-12-08 12:24:08,776 reranking models by 'multimer' metric
2024-12-08 12:24:12,643 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 12:28:37,457 Relaxation took 268.7s
2024-12-08 12:28:37,457 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.1 pTM=0.439 ipTM=0.321
2024-12-08 12:33:25,774 Relaxation took 288.3s
2024-12-08 12:33:25,774 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=62.6 pTM=0.407 ipTM=0.287
2024-12-08 12:37:29,765 Relaxation took 244.0s
2024-12-08 12:37:29,766 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=59.5 pTM=0.383 ipTM=0.181
2024-12-08 12:41:56,382 Relaxation took 266.6s
2024-12-08 12:41:56,383 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=57.6 pTM=0.383 ipTM=0.168
2024-12-08 12:45:47,504 Relaxation took 231.1s
2024-12-08 12:45:47,504 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55 pTM=0.383 ipTM=0.159
2024-12-08 12:45:51,286 Done