2024-12-08 08:39:11,669 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 08:39:11,992 Running on GPU
2024-12-08 08:39:13,771 Found 6 citations for tools or databases
2024-12-08 08:39:13,771 Query 1/1: RNF40_GAPDHS (length 1409)
2024-12-08 08:39:14,033 Sleeping for 5s. Reason: PENDING
2024-12-08 08:39:19,287 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:39:26,549 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:39:32,805 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:39:42,062 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:39:47,320 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:39:57,583 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:40:03,838 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:40:12,092 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:40:21,351 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:40:27,609 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:40:33,862 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:40:44,121 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:40:51,382 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:40:57,633 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:41:05,889 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:41:12,144 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:41:18,399 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:41:28,662 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:41:37,787 Sleeping for 10s. Reason: PENDING
2024-12-08 08:41:48,048 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:41:54,306 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:42:00,561 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:42:07,815 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:42:16,075 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:42:22,327 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:42:31,587 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:42:40,847 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:42:48,101 Sleeping for 10s. Reason: RUNNING
2024-12-08 08:42:58,361 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:43:06,616 Sleeping for 9s. Reason: RUNNING
2024-12-08 08:43:21,074 Setting max_seq=508, max_extra_seq=2048
2024-12-08 08:47:05,317 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=60.1 pTM=0.341 ipTM=0.146
2024-12-08 08:48:00,623 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=57.8 pTM=0.342 ipTM=0.143 tol=23.7
2024-12-08 08:48:56,069 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=59.2 pTM=0.343 ipTM=0.145 tol=17.2
2024-12-08 08:49:51,571 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=58.6 pTM=0.344 ipTM=0.149 tol=9.08
2024-12-08 08:50:47,101 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=59.1 pTM=0.344 ipTM=0.151 tol=7.6
2024-12-08 08:51:42,670 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.8 pTM=0.344 ipTM=0.15 tol=5.27
2024-12-08 08:52:38,250 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=59 pTM=0.344 ipTM=0.151 tol=9.71
2024-12-08 08:53:33,849 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=58.4 pTM=0.345 ipTM=0.151 tol=5.53
2024-12-08 08:54:29,434 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=58.8 pTM=0.346 ipTM=0.152 tol=7.06
2024-12-08 08:55:24,991 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=58.7 pTM=0.346 ipTM=0.152 tol=4.23
2024-12-08 08:56:20,494 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=58.7 pTM=0.345 ipTM=0.151 tol=3.66
2024-12-08 08:57:16,005 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=59 pTM=0.345 ipTM=0.152 tol=3.46
2024-12-08 08:58:11,524 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58.7 pTM=0.345 ipTM=0.151 tol=2.96
2024-12-08 08:59:07,054 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=58.8 pTM=0.345 ipTM=0.152 tol=4.93
2024-12-08 09:00:02,607 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.9 pTM=0.345 ipTM=0.153 tol=3.79
2024-12-08 09:00:58,175 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.8 pTM=0.346 ipTM=0.153 tol=2.83
2024-12-08 09:01:53,749 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=59.2 pTM=0.346 ipTM=0.152 tol=3.66
2024-12-08 09:02:49,327 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=59.1 pTM=0.346 ipTM=0.151 tol=4.05
2024-12-08 09:03:44,870 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=59 pTM=0.346 ipTM=0.15 tol=3.54
2024-12-08 09:04:40,399 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=59.3 pTM=0.346 ipTM=0.152 tol=2.48
2024-12-08 09:05:35,912 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=59.2 pTM=0.346 ipTM=0.151 tol=2.47
2024-12-08 09:06:31,445 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=59.4 pTM=0.346 ipTM=0.152 tol=2.37
2024-12-08 09:07:26,978 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.9 pTM=0.346 ipTM=0.151 tol=3.01
2024-12-08 09:08:22,524 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=59.2 pTM=0.345 ipTM=0.152 tol=2.68
2024-12-08 09:09:18,062 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58.9 pTM=0.345 ipTM=0.152 tol=2.6
2024-12-08 09:10:13,550 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=59.6 pTM=0.345 ipTM=0.15 tol=2.33
2024-12-08 09:11:09,059 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=59.5 pTM=0.345 ipTM=0.15 tol=2.91
2024-12-08 09:12:04,549 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=59.7 pTM=0.345 ipTM=0.152 tol=2.73
2024-12-08 09:13:00,048 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=59.7 pTM=0.345 ipTM=0.151 tol=2.65
2024-12-08 09:13:55,575 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=59.4 pTM=0.345 ipTM=0.15 tol=3.45
2024-12-08 09:14:51,132 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=59.4 pTM=0.345 ipTM=0.151 tol=2.43
2024-12-08 09:14:51,133 alphafold2_multimer_v3_model_1_seed_000 took 1886.6s (30 recycles)
2024-12-08 09:15:47,896 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=57.1 pTM=0.34 ipTM=0.147
2024-12-08 09:16:43,542 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=57.4 pTM=0.344 ipTM=0.149 tol=24.5
2024-12-08 09:17:39,143 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=57.5 pTM=0.343 ipTM=0.157 tol=11.3
2024-12-08 09:18:34,734 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=57.5 pTM=0.343 ipTM=0.161 tol=12.4
2024-12-08 09:19:30,302 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=57.2 pTM=0.344 ipTM=0.158 tol=10.3
2024-12-08 09:20:25,911 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=57.8 pTM=0.344 ipTM=0.16 tol=7
2024-12-08 09:21:21,529 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=57.8 pTM=0.344 ipTM=0.159 tol=6.9
2024-12-08 09:22:17,127 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=57.9 pTM=0.343 ipTM=0.159 tol=8.59
2024-12-08 09:23:12,727 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=57.7 pTM=0.344 ipTM=0.158 tol=7.57
2024-12-08 09:24:08,286 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=58.2 pTM=0.344 ipTM=0.159 tol=9.7
2024-12-08 09:25:03,837 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=57.2 pTM=0.343 ipTM=0.156 tol=8.27
2024-12-08 09:25:59,386 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=57.9 pTM=0.344 ipTM=0.157 tol=7.53
2024-12-08 09:26:54,972 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=56.9 pTM=0.343 ipTM=0.154 tol=6.85
2024-12-08 09:27:50,612 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=58.2 pTM=0.344 ipTM=0.157 tol=8.02
2024-12-08 09:28:46,201 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=57 pTM=0.343 ipTM=0.155 tol=9.86
2024-12-08 09:29:41,793 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=57.8 pTM=0.344 ipTM=0.159 tol=10.7
2024-12-08 09:30:37,383 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=57.7 pTM=0.344 ipTM=0.156 tol=8.55
2024-12-08 09:31:32,987 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=58.3 pTM=0.344 ipTM=0.156 tol=9.59
2024-12-08 09:32:28,601 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=57.1 pTM=0.344 ipTM=0.154 tol=9.9
2024-12-08 09:33:24,186 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=58.9 pTM=0.343 ipTM=0.157 tol=9.29
2024-12-08 09:34:19,790 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=57.8 pTM=0.344 ipTM=0.154 tol=6.34
2024-12-08 09:35:15,377 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=58.2 pTM=0.344 ipTM=0.158 tol=9.24
2024-12-08 09:36:10,927 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=57 pTM=0.344 ipTM=0.156 tol=12.6
2024-12-08 09:37:06,495 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=58.1 pTM=0.343 ipTM=0.157 tol=12
2024-12-08 09:38:02,067 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=57.4 pTM=0.344 ipTM=0.156 tol=8.34
2024-12-08 09:38:57,688 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=57.8 pTM=0.344 ipTM=0.158 tol=6.89
2024-12-08 09:39:53,303 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=57.5 pTM=0.344 ipTM=0.155 tol=7.56
2024-12-08 09:40:48,911 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=58.7 pTM=0.343 ipTM=0.157 tol=7.3
2024-12-08 09:41:44,523 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=57.3 pTM=0.344 ipTM=0.157 tol=8.98
2024-12-08 09:42:40,125 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=57.8 pTM=0.344 ipTM=0.156 tol=8.09
2024-12-08 09:43:35,690 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=57.2 pTM=0.344 ipTM=0.156 tol=8.33
2024-12-08 09:43:35,691 alphafold2_multimer_v3_model_2_seed_000 took 1723.4s (30 recycles)
2024-12-08 09:44:32,583 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=63.3 pTM=0.336 ipTM=0.145
2024-12-08 09:45:28,293 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=63 pTM=0.338 ipTM=0.143 tol=28
2024-12-08 09:46:24,009 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=63.4 pTM=0.338 ipTM=0.149 tol=14
2024-12-08 09:47:19,713 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=63.2 pTM=0.339 ipTM=0.148 tol=6.38
2024-12-08 09:48:15,419 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=62.8 pTM=0.34 ipTM=0.151 tol=8.76
2024-12-08 09:49:11,107 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=63.4 pTM=0.339 ipTM=0.15 tol=4.22
2024-12-08 09:50:06,847 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=62.6 pTM=0.339 ipTM=0.15 tol=6.99
2024-12-08 09:51:02,565 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=61.5 pTM=0.34 ipTM=0.153 tol=5.15
2024-12-08 09:51:58,325 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=64.1 pTM=0.339 ipTM=0.152 tol=9.19
2024-12-08 09:52:53,992 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=63.4 pTM=0.34 ipTM=0.156 tol=6.73
2024-12-08 09:53:49,744 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=61.6 pTM=0.34 ipTM=0.154 tol=7.46
2024-12-08 09:54:45,511 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=63.2 pTM=0.339 ipTM=0.158 tol=9.05
2024-12-08 09:55:41,233 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=63.5 pTM=0.34 ipTM=0.155 tol=6.98
2024-12-08 09:56:36,959 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=62.9 pTM=0.341 ipTM=0.155 tol=7.02
2024-12-08 09:57:32,733 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61.6 pTM=0.34 ipTM=0.154 tol=7.72
2024-12-08 09:58:28,550 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61.9 pTM=0.339 ipTM=0.157 tol=9.86
2024-12-08 09:59:24,345 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61.7 pTM=0.34 ipTM=0.158 tol=11.3
2024-12-08 10:00:20,120 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=62.6 pTM=0.339 ipTM=0.155 tol=10.6
2024-12-08 10:01:15,906 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61.5 pTM=0.34 ipTM=0.158 tol=12.7
2024-12-08 10:02:11,722 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62.1 pTM=0.339 ipTM=0.159 tol=14
2024-12-08 10:03:07,437 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=63.2 pTM=0.34 ipTM=0.159 tol=13.6
2024-12-08 10:04:03,201 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=62.5 pTM=0.34 ipTM=0.159 tol=9.7
2024-12-08 10:04:58,903 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=63.3 pTM=0.34 ipTM=0.157 tol=4.72
2024-12-08 10:05:54,613 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=63 pTM=0.34 ipTM=0.159 tol=5.27
2024-12-08 10:06:50,317 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=63 pTM=0.34 ipTM=0.158 tol=4.99
2024-12-08 10:07:46,030 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=63 pTM=0.34 ipTM=0.157 tol=5.21
2024-12-08 10:08:41,807 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=63 pTM=0.34 ipTM=0.155 tol=5.8
2024-12-08 10:09:37,575 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=63.6 pTM=0.34 ipTM=0.158 tol=3.7
2024-12-08 10:10:33,349 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=63.2 pTM=0.34 ipTM=0.155 tol=5.95
2024-12-08 10:11:29,092 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=63.6 pTM=0.34 ipTM=0.154 tol=10.3
2024-12-08 10:12:24,823 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=63.5 pTM=0.34 ipTM=0.153 tol=7.66
2024-12-08 10:12:24,825 alphafold2_multimer_v3_model_3_seed_000 took 1727.9s (30 recycles)
2024-12-08 10:13:21,822 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=56.7 pTM=0.334 ipTM=0.142
2024-12-08 10:14:17,707 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=56.8 pTM=0.337 ipTM=0.143 tol=19.8
2024-12-08 10:15:13,547 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58.1 pTM=0.336 ipTM=0.145 tol=11.2
2024-12-08 10:16:09,384 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=56.8 pTM=0.337 ipTM=0.146 tol=8.02
2024-12-08 10:17:05,198 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=57.2 pTM=0.337 ipTM=0.145 tol=5.96
2024-12-08 10:18:01,079 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=56.5 pTM=0.337 ipTM=0.146 tol=7.21
2024-12-08 10:18:56,983 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56.6 pTM=0.337 ipTM=0.147 tol=7.43
2024-12-08 10:19:52,901 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.9 pTM=0.337 ipTM=0.148 tol=8.15
2024-12-08 10:20:48,838 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.6 pTM=0.337 ipTM=0.147 tol=8.05
2024-12-08 10:21:44,761 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=56.4 pTM=0.336 ipTM=0.147 tol=7.46
2024-12-08 10:22:40,677 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=56.8 pTM=0.337 ipTM=0.146 tol=8.75
2024-12-08 10:23:36,592 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.7 pTM=0.336 ipTM=0.145 tol=9.67
2024-12-08 10:24:32,513 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=55.9 pTM=0.336 ipTM=0.145 tol=8.23
2024-12-08 10:25:28,432 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=56 pTM=0.337 ipTM=0.145 tol=5.79
2024-12-08 10:26:24,353 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=56.6 pTM=0.336 ipTM=0.146 tol=8.89
2024-12-08 10:27:20,276 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=56.2 pTM=0.337 ipTM=0.146 tol=7.4
2024-12-08 10:28:16,238 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=56.8 pTM=0.337 ipTM=0.145 tol=8.9
2024-12-08 10:29:12,171 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=56.2 pTM=0.337 ipTM=0.146 tol=8.98
2024-12-08 10:30:08,146 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=56.5 pTM=0.337 ipTM=0.145 tol=7.66
2024-12-08 10:31:04,092 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.8 pTM=0.337 ipTM=0.146 tol=8.02
2024-12-08 10:32:00,028 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=57.1 pTM=0.337 ipTM=0.147 tol=8.45
2024-12-08 10:32:55,972 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.3 pTM=0.337 ipTM=0.146 tol=11.8
2024-12-08 10:33:51,922 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=56.3 pTM=0.337 ipTM=0.145 tol=7.71
2024-12-08 10:34:47,875 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=56 pTM=0.337 ipTM=0.146 tol=8.08
2024-12-08 10:35:43,804 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=56.8 pTM=0.337 ipTM=0.146 tol=8.94
2024-12-08 10:36:39,707 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55.7 pTM=0.337 ipTM=0.147 tol=8.9
2024-12-08 10:37:35,608 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=56.5 pTM=0.337 ipTM=0.147 tol=8.2
2024-12-08 10:38:31,543 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=56.1 pTM=0.337 ipTM=0.146 tol=7.55
2024-12-08 10:39:27,482 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=56.2 pTM=0.337 ipTM=0.147 tol=7.02
2024-12-08 10:40:23,435 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55.7 pTM=0.337 ipTM=0.147 tol=6.97
2024-12-08 10:41:19,354 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=56.5 pTM=0.337 ipTM=0.148 tol=7.1
2024-12-08 10:41:19,355 alphafold2_multimer_v3_model_4_seed_000 took 1733.3s (30 recycles)
2024-12-08 10:42:16,328 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=61.3 pTM=0.334 ipTM=0.144
2024-12-08 10:43:12,163 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=61.2 pTM=0.336 ipTM=0.142 tol=19.1
2024-12-08 10:44:07,892 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.8 pTM=0.337 ipTM=0.144 tol=9.1
2024-12-08 10:45:03,642 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.2 pTM=0.337 ipTM=0.143 tol=7.9
2024-12-08 10:45:59,322 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=60.8 pTM=0.338 ipTM=0.143 tol=7.59
2024-12-08 10:46:54,947 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61 pTM=0.338 ipTM=0.145 tol=4.55
2024-12-08 10:47:50,593 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=60.7 pTM=0.338 ipTM=0.144 tol=4.75
2024-12-08 10:48:46,240 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.2 pTM=0.338 ipTM=0.142 tol=4.93
2024-12-08 10:49:41,947 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=61.4 pTM=0.338 ipTM=0.146 tol=6.85
2024-12-08 10:50:37,599 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=59.8 pTM=0.339 ipTM=0.149 tol=11.1
2024-12-08 10:51:33,296 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=57.9 pTM=0.338 ipTM=0.143 tol=13.2
2024-12-08 10:52:29,038 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=58.8 pTM=0.338 ipTM=0.143 tol=10.6
2024-12-08 10:53:24,767 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=57.7 pTM=0.338 ipTM=0.145 tol=16.5
2024-12-08 10:54:20,508 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=56.6 pTM=0.337 ipTM=0.143 tol=11.9
2024-12-08 10:55:16,247 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57.2 pTM=0.337 ipTM=0.143 tol=13
2024-12-08 10:56:11,895 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=57 pTM=0.338 ipTM=0.144 tol=7.96
2024-12-08 10:57:07,591 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=57 pTM=0.338 ipTM=0.148 tol=12
2024-12-08 10:58:03,274 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=57.6 pTM=0.338 ipTM=0.147 tol=18.7
2024-12-08 10:58:58,985 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=56.4 pTM=0.337 ipTM=0.142 tol=19.9
2024-12-08 10:59:54,714 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=56.4 pTM=0.338 ipTM=0.143 tol=14
2024-12-08 11:00:50,424 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=57 pTM=0.338 ipTM=0.148 tol=12.3
2024-12-08 11:01:46,138 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=56.2 pTM=0.338 ipTM=0.144 tol=15.4
2024-12-08 11:02:41,897 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=56.3 pTM=0.338 ipTM=0.149 tol=15.1
2024-12-08 11:03:37,742 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.9 pTM=0.338 ipTM=0.147 tol=16.3
2024-12-08 11:04:33,645 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=58 pTM=0.337 ipTM=0.145 tol=21.6
2024-12-08 11:05:29,454 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=58 pTM=0.337 ipTM=0.141 tol=9.95
2024-12-08 11:06:25,191 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=57.3 pTM=0.337 ipTM=0.146 tol=8.25
2024-12-08 11:07:20,899 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=56.9 pTM=0.338 ipTM=0.143 tol=11
2024-12-08 11:08:16,583 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=57.2 pTM=0.338 ipTM=0.15 tol=10.5
2024-12-08 11:09:12,316 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=56.5 pTM=0.338 ipTM=0.143 tol=15.2
2024-12-08 11:10:08,019 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=57.5 pTM=0.338 ipTM=0.147 tol=15.3
2024-12-08 11:10:08,020 alphafold2_multimer_v3_model_5_seed_000 took 1727.5s (30 recycles)
2024-12-08 11:10:09,195 reranking models by 'multimer' metric
2024-12-08 11:10:12,769 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 11:12:05,441 Relaxation took 116.2s
2024-12-08 11:12:05,441 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=57.2 pTM=0.344 ipTM=0.156
2024-12-08 11:15:39,634 Relaxation took 214.2s
2024-12-08 11:15:39,634 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=63.5 pTM=0.34 ipTM=0.153
2024-12-08 11:17:28,052 Relaxation took 108.4s
2024-12-08 11:17:28,052 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=59.4 pTM=0.345 ipTM=0.151
2024-12-08 11:19:46,153 Relaxation took 138.1s
2024-12-08 11:19:46,153 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=56.5 pTM=0.337 ipTM=0.148
2024-12-08 11:23:07,464 Relaxation took 201.3s
2024-12-08 11:23:07,464 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=57.5 pTM=0.338 ipTM=0.147
2024-12-08 11:23:10,429 Done