2024-12-08 08:55:34,833 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 08:55:36,388 Running on GPU
2024-12-08 08:55:39,481 Found 6 citations for tools or databases
2024-12-08 08:55:39,481 Query 1/1: RNF40_NUPL1 (length 1600)
2024-12-08 08:55:41,293 Sleeping for 10s. Reason: PENDING
2024-12-08 08:55:51,562 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:55:59,822 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:56:06,079 Sleeping for 7s. Reason: RUNNING
2024-12-08 08:56:13,333 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:56:21,593 Sleeping for 5s. Reason: RUNNING
2024-12-08 08:56:26,852 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:56:33,106 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:56:41,370 Sleeping for 8s. Reason: RUNNING
2024-12-08 08:56:49,636 Sleeping for 6s. Reason: RUNNING
2024-12-08 08:57:00,425 Setting max_seq=508, max_extra_seq=2048
2024-12-08 09:01:02,524 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=48.4 pTM=0.246 ipTM=0.161
2024-12-08 09:02:06,538 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=46.4 pTM=0.236 ipTM=0.168 tol=27.9
2024-12-08 09:03:10,536 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=45.9 pTM=0.25 ipTM=0.241 tol=18.9
2024-12-08 09:04:14,625 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=46.6 pTM=0.256 ipTM=0.275 tol=13.5
2024-12-08 09:05:18,758 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=45.9 pTM=0.248 ipTM=0.267 tol=13.6
2024-12-08 09:06:22,974 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=46.8 pTM=0.25 ipTM=0.269 tol=14
2024-12-08 09:07:27,115 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=46.1 pTM=0.25 ipTM=0.271 tol=11.6
2024-12-08 09:08:31,322 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=46.1 pTM=0.251 ipTM=0.267 tol=11.4
2024-12-08 09:09:35,460 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=46.3 pTM=0.25 ipTM=0.268 tol=12.5
2024-12-08 09:10:39,617 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=46.4 pTM=0.25 ipTM=0.266 tol=11.9
2024-12-08 09:11:43,685 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=46.2 pTM=0.252 ipTM=0.27 tol=9.5
2024-12-08 09:12:47,793 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=46.5 pTM=0.252 ipTM=0.266 tol=11.4
2024-12-08 09:13:51,871 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=46.3 pTM=0.251 ipTM=0.266 tol=6.37
2024-12-08 09:14:55,987 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=45.7 pTM=0.25 ipTM=0.267 tol=13.7
2024-12-08 09:16:00,010 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=46.1 pTM=0.254 ipTM=0.269 tol=12.5
2024-12-08 09:17:04,061 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=46.7 pTM=0.251 ipTM=0.27 tol=8.02
2024-12-08 09:18:08,083 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=46.6 pTM=0.255 ipTM=0.27 tol=6.05
2024-12-08 09:19:12,162 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=46.2 pTM=0.256 ipTM=0.271 tol=9.7
2024-12-08 09:20:16,169 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=47.1 pTM=0.256 ipTM=0.271 tol=7.45
2024-12-08 09:21:20,192 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=46.3 pTM=0.255 ipTM=0.271 tol=6.71
2024-12-08 09:22:24,265 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=46.5 pTM=0.255 ipTM=0.272 tol=6.5
2024-12-08 09:23:28,222 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=46.7 pTM=0.257 ipTM=0.274 tol=9.73
2024-12-08 09:24:32,195 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=47.3 pTM=0.257 ipTM=0.273 tol=9.09
2024-12-08 09:25:36,118 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=47.1 pTM=0.259 ipTM=0.275 tol=5.4
2024-12-08 09:26:40,082 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=46.8 pTM=0.26 ipTM=0.277 tol=5.16
2024-12-08 09:27:44,038 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=46.7 pTM=0.261 ipTM=0.278 tol=10.1
2024-12-08 09:28:47,974 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=46.8 pTM=0.261 ipTM=0.278 tol=8.7
2024-12-08 09:29:51,984 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=46.8 pTM=0.262 ipTM=0.279 tol=7.28
2024-12-08 09:30:55,968 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=46.7 pTM=0.261 ipTM=0.278 tol=10.9
2024-12-08 09:32:00,000 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=47.2 pTM=0.26 ipTM=0.276 tol=10.8
2024-12-08 09:33:04,021 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=46.8 pTM=0.26 ipTM=0.275 tol=8.66
2024-12-08 09:33:04,023 alphafold2_multimer_v3_model_1_seed_000 took 2142.5s (30 recycles)
2024-12-08 09:34:10,306 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=43.8 pTM=0.232 ipTM=0.183
2024-12-08 09:35:14,358 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=43.9 pTM=0.226 ipTM=0.159 tol=29.8
2024-12-08 09:36:18,268 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=42.4 pTM=0.207 ipTM=0.166 tol=33.1
2024-12-08 09:37:22,230 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=43.3 pTM=0.213 ipTM=0.188 tol=29.8
2024-12-08 09:38:26,432 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=42.3 pTM=0.206 ipTM=0.181 tol=23.5
2024-12-08 09:39:30,502 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=43.4 pTM=0.216 ipTM=0.169 tol=21.7
2024-12-08 09:40:34,473 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=43.8 pTM=0.222 ipTM=0.217 tol=20
2024-12-08 09:41:38,442 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=43.9 pTM=0.22 ipTM=0.218 tol=13.4
2024-12-08 09:42:42,419 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=43.6 pTM=0.218 ipTM=0.203 tol=11.5
2024-12-08 09:43:46,400 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=44 pTM=0.221 ipTM=0.212 tol=14
2024-12-08 09:44:50,354 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=43.9 pTM=0.214 ipTM=0.176 tol=13.6
2024-12-08 09:45:54,337 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=43.3 pTM=0.211 ipTM=0.18 tol=16.4
2024-12-08 09:46:58,333 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=43.6 pTM=0.213 ipTM=0.196 tol=10.8
2024-12-08 09:48:02,378 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=43 pTM=0.212 ipTM=0.19 tol=9.97
2024-12-08 09:49:06,398 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=43.9 pTM=0.215 ipTM=0.199 tol=10.2
2024-12-08 09:50:10,487 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=43.1 pTM=0.213 ipTM=0.195 tol=27.5
2024-12-08 09:51:14,626 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=43.8 pTM=0.212 ipTM=0.204 tol=13.2
2024-12-08 09:52:18,788 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=43.7 pTM=0.21 ipTM=0.202 tol=18.3
2024-12-08 09:53:22,897 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=43.4 pTM=0.209 ipTM=0.196 tol=16.8
2024-12-08 09:54:27,007 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=43.2 pTM=0.21 ipTM=0.196 tol=14.6
2024-12-08 09:55:31,181 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=43.2 pTM=0.209 ipTM=0.194 tol=18.7
2024-12-08 09:56:35,279 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=43.6 pTM=0.208 ipTM=0.199 tol=13.7
2024-12-08 09:57:39,373 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=44.3 pTM=0.208 ipTM=0.198 tol=15.9
2024-12-08 09:58:43,449 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=43.9 pTM=0.208 ipTM=0.196 tol=13.6
2024-12-08 09:59:47,513 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=44.5 pTM=0.212 ipTM=0.199 tol=18.6
2024-12-08 10:00:51,676 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=43.8 pTM=0.213 ipTM=0.198 tol=26.2
2024-12-08 10:01:55,820 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=43.1 pTM=0.209 ipTM=0.204 tol=14
2024-12-08 10:02:59,962 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=43 pTM=0.209 ipTM=0.201 tol=20.2
2024-12-08 10:04:03,994 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=43.1 pTM=0.212 ipTM=0.195 tol=15.9
2024-12-08 10:05:08,047 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=44.4 pTM=0.218 ipTM=0.199 tol=15.6
2024-12-08 10:06:12,139 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=44.1 pTM=0.216 ipTM=0.219 tol=20.8
2024-12-08 10:06:12,141 alphafold2_multimer_v3_model_2_seed_000 took 1985.9s (30 recycles)
2024-12-08 10:07:18,847 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=47.2 pTM=0.235 ipTM=0.16
2024-12-08 10:08:23,325 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=48.2 pTM=0.242 ipTM=0.241 tol=32.7
2024-12-08 10:09:27,758 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=48.9 pTM=0.254 ipTM=0.25 tol=19.7
2024-12-08 10:10:32,168 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=48.2 pTM=0.253 ipTM=0.244 tol=27.3
2024-12-08 10:11:36,403 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=48.2 pTM=0.248 ipTM=0.242 tol=13.3
2024-12-08 10:12:40,600 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=49.3 pTM=0.246 ipTM=0.238 tol=14.5
2024-12-08 10:13:44,721 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=49.8 pTM=0.283 ipTM=0.268 tol=14.8
2024-12-08 10:14:48,720 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=49.2 pTM=0.297 ipTM=0.289 tol=13.9
2024-12-08 10:15:52,879 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=46.5 pTM=0.282 ipTM=0.272 tol=50
2024-12-08 10:16:56,911 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=48.8 pTM=0.284 ipTM=0.278 tol=51.7
2024-12-08 10:18:00,870 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=49 pTM=0.288 ipTM=0.28 tol=12.7
2024-12-08 10:19:04,827 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=46.6 pTM=0.284 ipTM=0.274 tol=33.8
2024-12-08 10:20:08,762 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=49.4 pTM=0.29 ipTM=0.283 tol=25.4
2024-12-08 10:21:12,733 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=49.9 pTM=0.294 ipTM=0.287 tol=14.8
2024-12-08 10:22:16,710 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=49.5 pTM=0.291 ipTM=0.283 tol=8.93
2024-12-08 10:23:20,681 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=49.4 pTM=0.293 ipTM=0.285 tol=8.68
2024-12-08 10:24:24,641 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=49.4 pTM=0.287 ipTM=0.281 tol=9.34
2024-12-08 10:25:28,605 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=49 pTM=0.287 ipTM=0.281 tol=8.31
2024-12-08 10:26:32,712 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=45.5 pTM=0.284 ipTM=0.277 tol=45
2024-12-08 10:27:36,865 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=46 pTM=0.272 ipTM=0.27 tol=28.6
2024-12-08 10:28:40,949 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=46.9 pTM=0.311 ipTM=0.312 tol=47.6
2024-12-08 10:29:44,965 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=46.9 pTM=0.306 ipTM=0.308 tol=17.9
2024-12-08 10:30:48,943 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=49.1 pTM=0.324 ipTM=0.33 tol=19
2024-12-08 10:31:52,858 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=50.4 pTM=0.335 ipTM=0.346 tol=9.54
2024-12-08 10:32:56,780 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=50.2 pTM=0.336 ipTM=0.348 tol=10.6
2024-12-08 10:34:00,707 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=49.6 pTM=0.338 ipTM=0.35 tol=6.93
2024-12-08 10:35:04,700 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=49.3 pTM=0.339 ipTM=0.354 tol=7.79
2024-12-08 10:36:08,645 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=49.8 pTM=0.339 ipTM=0.354 tol=12.1
2024-12-08 10:37:12,535 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=50.4 pTM=0.342 ipTM=0.355 tol=14
2024-12-08 10:38:16,422 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=50.1 pTM=0.341 ipTM=0.353 tol=10.3
2024-12-08 10:39:20,296 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=50.4 pTM=0.34 ipTM=0.356 tol=5.66
2024-12-08 10:39:20,298 alphafold2_multimer_v3_model_3_seed_000 took 1986.0s (30 recycles)
2024-12-08 10:40:27,179 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=44.4 pTM=0.225 ipTM=0.158
2024-12-08 10:41:32,101 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=41.7 pTM=0.209 ipTM=0.147 tol=43.9
2024-12-08 10:42:36,681 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=42.5 pTM=0.223 ipTM=0.175 tol=27.9
2024-12-08 10:43:41,101 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=44.3 pTM=0.25 ipTM=0.261 tol=30
2024-12-08 10:44:45,433 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=44.5 pTM=0.249 ipTM=0.245 tol=18
2024-12-08 10:45:49,821 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=42.4 pTM=0.233 ipTM=0.219 tol=11.8
2024-12-08 10:46:54,235 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=42.7 pTM=0.245 ipTM=0.24 tol=22
2024-12-08 10:47:58,836 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=41.8 pTM=0.219 ipTM=0.206 tol=22.4
2024-12-08 10:49:03,440 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=41.4 pTM=0.233 ipTM=0.216 tol=20.4
2024-12-08 10:50:07,914 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=43.2 pTM=0.239 ipTM=0.225 tol=35.1
2024-12-08 10:51:12,231 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=44 pTM=0.245 ipTM=0.234 tol=10.6
2024-12-08 10:52:16,574 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=43 pTM=0.229 ipTM=0.232 tol=11.8
2024-12-08 10:53:20,881 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=44.4 pTM=0.247 ipTM=0.25 tol=9.92
2024-12-08 10:54:25,127 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=42.6 pTM=0.229 ipTM=0.23 tol=11.3
2024-12-08 10:55:29,387 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=43.8 pTM=0.246 ipTM=0.252 tol=7
2024-12-08 10:56:33,658 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=42.4 pTM=0.23 ipTM=0.234 tol=7.55
2024-12-08 10:57:37,962 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=43.9 pTM=0.25 ipTM=0.245 tol=7.68
2024-12-08 10:58:42,178 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=43.7 pTM=0.265 ipTM=0.258 tol=7.44
2024-12-08 10:59:46,453 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=43.3 pTM=0.256 ipTM=0.239 tol=7.4
2024-12-08 11:00:50,709 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=42.3 pTM=0.235 ipTM=0.24 tol=7.6
2024-12-08 11:01:55,162 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=41.7 pTM=0.23 ipTM=0.233 tol=13.2
2024-12-08 11:02:59,502 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=42.7 pTM=0.25 ipTM=0.238 tol=11.1
2024-12-08 11:04:03,786 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=42.4 pTM=0.244 ipTM=0.229 tol=9.34
2024-12-08 11:05:08,187 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=41.8 pTM=0.242 ipTM=0.224 tol=16.8
2024-12-08 11:06:12,531 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=41.8 pTM=0.239 ipTM=0.219 tol=13.8
2024-12-08 11:07:16,888 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=42.3 pTM=0.238 ipTM=0.227 tol=12.2
2024-12-08 11:08:21,080 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=43.7 pTM=0.26 ipTM=0.246 tol=6.41
2024-12-08 11:09:25,397 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=41.7 pTM=0.241 ipTM=0.219 tol=7.48
2024-12-08 11:10:29,666 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=44.5 pTM=0.264 ipTM=0.258 tol=9.87
2024-12-08 11:11:33,894 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=43.2 pTM=0.241 ipTM=0.24 tol=8.34
2024-12-08 11:12:38,343 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=42.1 pTM=0.247 ipTM=0.231 tol=20
2024-12-08 11:12:38,345 alphafold2_multimer_v3_model_4_seed_000 took 1995.9s (30 recycles)
2024-12-08 11:13:45,007 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=47.4 pTM=0.259 ipTM=0.153
2024-12-08 11:14:49,496 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=47.1 pTM=0.251 ipTM=0.154 tol=21.1
2024-12-08 11:15:53,875 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=47 pTM=0.239 ipTM=0.158 tol=19.5
2024-12-08 11:16:58,267 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=45.8 pTM=0.248 ipTM=0.162 tol=18.7
2024-12-08 11:18:02,620 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=45.8 pTM=0.238 ipTM=0.168 tol=15.1
2024-12-08 11:19:06,981 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=46 pTM=0.238 ipTM=0.169 tol=14.6
2024-12-08 11:20:11,331 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=46.5 pTM=0.238 ipTM=0.177 tol=9.38
2024-12-08 11:21:15,684 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=46.5 pTM=0.236 ipTM=0.176 tol=9.67
2024-12-08 11:22:20,010 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=46.5 pTM=0.239 ipTM=0.174 tol=9.54
2024-12-08 11:23:24,279 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=46.7 pTM=0.238 ipTM=0.172 tol=8.87
2024-12-08 11:24:28,643 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=46.4 pTM=0.235 ipTM=0.168 tol=10.5
2024-12-08 11:25:32,990 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=46.8 pTM=0.229 ipTM=0.172 tol=13.4
2024-12-08 11:26:37,360 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=46.3 pTM=0.229 ipTM=0.165 tol=16
2024-12-08 11:27:41,740 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=47.5 pTM=0.24 ipTM=0.231 tol=23.5
2024-12-08 11:28:46,106 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=47.7 pTM=0.246 ipTM=0.239 tol=13.6
2024-12-08 11:29:50,386 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=47.3 pTM=0.231 ipTM=0.241 tol=12.4
2024-12-08 11:30:54,684 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=47.6 pTM=0.253 ipTM=0.254 tol=9.6
2024-12-08 11:31:59,031 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=46.7 pTM=0.229 ipTM=0.225 tol=32
2024-12-08 11:33:03,329 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=47.7 pTM=0.236 ipTM=0.225 tol=14.1
2024-12-08 11:34:07,569 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=47 pTM=0.239 ipTM=0.234 tol=9.92
2024-12-08 11:35:11,741 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=48 pTM=0.249 ipTM=0.23 tol=14.9
2024-12-08 11:36:15,907 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=47.4 pTM=0.239 ipTM=0.229 tol=9.04
2024-12-08 11:37:20,125 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=46.6 pTM=0.239 ipTM=0.227 tol=7.64
2024-12-08 11:38:24,282 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=47 pTM=0.265 ipTM=0.241 tol=11.8
2024-12-08 11:39:28,501 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=46.9 pTM=0.237 ipTM=0.229 tol=10.9
2024-12-08 11:40:32,738 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=47.9 pTM=0.263 ipTM=0.247 tol=10.5
2024-12-08 11:41:36,927 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=47.5 pTM=0.252 ipTM=0.237 tol=7.81
2024-12-08 11:42:41,135 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=47 pTM=0.252 ipTM=0.234 tol=6.66
2024-12-08 11:43:45,363 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=46.7 pTM=0.229 ipTM=0.219 tol=8.9
2024-12-08 11:44:49,622 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=47.3 pTM=0.259 ipTM=0.244 tol=9.7
2024-12-08 11:45:53,794 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=47.2 pTM=0.259 ipTM=0.244 tol=11.1
2024-12-08 11:45:53,796 alphafold2_multimer_v3_model_5_seed_000 took 1993.3s (30 recycles)
2024-12-08 11:45:55,985 reranking models by 'multimer' metric
2024-12-08 11:46:00,522 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 11:49:40,068 Relaxation took 224.1s
2024-12-08 11:49:40,068 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=50.4 pTM=0.34 ipTM=0.356
2024-12-08 11:54:55,455 Relaxation took 315.4s
2024-12-08 11:54:55,455 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=46.8 pTM=0.26 ipTM=0.275
2024-12-08 11:59:54,293 Relaxation took 298.8s
2024-12-08 11:59:54,294 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=47.2 pTM=0.259 ipTM=0.244
2024-12-08 12:04:34,579 Relaxation took 280.3s
2024-12-08 12:04:34,579 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=42.1 pTM=0.247 ipTM=0.231
2024-12-08 12:10:11,162 Relaxation took 336.6s
2024-12-08 12:10:11,162 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=44.1 pTM=0.216 ipTM=0.219
2024-12-08 12:10:15,983 Done