2024-12-08 09:04:49,092 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 09:04:49,425 Running on GPU
2024-12-08 09:04:53,225 Found 6 citations for tools or databases
2024-12-08 09:04:53,226 Query 1/1: RNF40_SNAPC4 (length 2470)
2024-12-08 09:04:53,503 Sleeping for 10s. Reason: PENDING
2024-12-08 09:05:03,758 Sleeping for 5s. Reason: RUNNING
2024-12-08 09:05:09,025 Sleeping for 8s. Reason: RUNNING
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2024-12-08 09:05:30,802 Sleeping for 7s. Reason: RUNNING
2024-12-08 09:05:38,057 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:05:48,322 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:05:58,581 Sleeping for 8s. Reason: RUNNING
2024-12-08 09:06:06,842 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:06:17,104 Sleeping for 5s. Reason: RUNNING
2024-12-08 09:06:22,358 Sleeping for 7s. Reason: RUNNING
2024-12-08 09:06:29,617 Sleeping for 6s. Reason: RUNNING
2024-12-08 09:06:35,878 Sleeping for 9s. Reason: RUNNING
2024-12-08 09:06:45,134 Sleeping for 5s. Reason: RUNNING
2024-12-08 09:06:50,397 Sleeping for 8s. Reason: RUNNING
2024-12-08 09:06:58,657 Sleeping for 9s. Reason: RUNNING
2024-12-08 09:07:07,914 Sleeping for 5s. Reason: RUNNING
2024-12-08 09:07:13,178 Sleeping for 9s. Reason: RUNNING
2024-12-08 09:07:22,437 Sleeping for 6s. Reason: RUNNING
2024-12-08 09:07:28,697 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:07:38,971 Sleeping for 9s. Reason: RUNNING
2024-12-08 09:07:48,236 Sleeping for 7s. Reason: RUNNING
2024-12-08 09:07:55,493 Sleeping for 7s. Reason: RUNNING
2024-12-08 09:08:04,504 Sleeping for 6s. Reason: PENDING
2024-12-08 09:08:10,754 Sleeping for 7s. Reason: RUNNING
2024-12-08 09:08:18,008 Sleeping for 5s. Reason: RUNNING
2024-12-08 09:08:23,260 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:08:33,518 Sleeping for 6s. Reason: RUNNING
2024-12-08 09:08:39,778 Sleeping for 8s. Reason: RUNNING
2024-12-08 09:08:48,035 Sleeping for 5s. Reason: RUNNING
2024-12-08 09:08:53,289 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:09:03,554 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:09:13,812 Sleeping for 6s. Reason: RUNNING
2024-12-08 09:09:20,064 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:09:30,324 Sleeping for 7s. Reason: RUNNING
2024-12-08 09:09:37,584 Sleeping for 6s. Reason: RUNNING
2024-12-08 09:09:43,840 Sleeping for 9s. Reason: RUNNING
2024-12-08 09:09:53,109 Sleeping for 10s. Reason: RUNNING
2024-12-08 09:10:10,298 Setting max_seq=508, max_extra_seq=2048
2024-12-08 09:17:46,864 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=40.4 pTM=0.273 ipTM=0.212
2024-12-08 09:22:33,245 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=39 pTM=0.275 ipTM=0.236 tol=23.4
2024-12-08 09:27:19,557 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=38.8 pTM=0.28 ipTM=0.226 tol=15.3
2024-12-08 09:32:05,888 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=38.9 pTM=0.28 ipTM=0.224 tol=10.9
2024-12-08 09:36:52,356 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=39.7 pTM=0.277 ipTM=0.222 tol=9.81
2024-12-08 09:41:38,770 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=39.3 pTM=0.277 ipTM=0.221 tol=8.62
2024-12-08 09:46:25,036 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=39.3 pTM=0.279 ipTM=0.224 tol=6.21
2024-12-08 09:51:11,448 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=40 pTM=0.277 ipTM=0.221 tol=10.4
2024-12-08 09:55:57,782 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=39.6 pTM=0.275 ipTM=0.223 tol=11.4
2024-12-08 10:00:44,104 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=39.6 pTM=0.275 ipTM=0.223 tol=7.54
2024-12-08 10:05:30,380 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=39.8 pTM=0.275 ipTM=0.224 tol=5.29
2024-12-08 10:10:16,720 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=39.8 pTM=0.276 ipTM=0.225 tol=5.57
2024-12-08 10:15:02,967 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=39.8 pTM=0.276 ipTM=0.226 tol=5.12
2024-12-08 10:19:49,225 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=39.7 pTM=0.276 ipTM=0.225 tol=4.62
2024-12-08 10:24:35,646 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=40.4 pTM=0.278 ipTM=0.22 tol=7.37
2024-12-08 10:29:22,029 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=40 pTM=0.277 ipTM=0.227 tol=8.68
2024-12-08 10:34:08,403 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=39.6 pTM=0.277 ipTM=0.222 tol=6.81
2024-12-08 10:38:54,781 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=39.7 pTM=0.277 ipTM=0.222 tol=6.02
2024-12-08 10:43:41,136 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=39.7 pTM=0.277 ipTM=0.222 tol=5.19
2024-12-08 10:48:27,539 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=39.8 pTM=0.278 ipTM=0.224 tol=4.71
2024-12-08 10:53:13,913 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=40 pTM=0.277 ipTM=0.222 tol=4.68
2024-12-08 10:58:00,270 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=39.7 pTM=0.278 ipTM=0.223 tol=4.43
2024-12-08 11:02:46,634 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=39.8 pTM=0.279 ipTM=0.224 tol=7.89
2024-12-08 11:07:32,993 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=39.9 pTM=0.278 ipTM=0.223 tol=8.02
2024-12-08 11:12:19,274 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=39.8 pTM=0.278 ipTM=0.222 tol=5.99
2024-12-08 11:17:05,602 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=39.9 pTM=0.278 ipTM=0.221 tol=8.2
2024-12-08 11:21:51,946 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=39.8 pTM=0.278 ipTM=0.221 tol=4.14
2024-12-08 11:26:38,249 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=40.1 pTM=0.277 ipTM=0.22 tol=6.55
2024-12-08 11:31:24,621 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=39.8 pTM=0.278 ipTM=0.222 tol=7.94
2024-12-08 11:36:11,041 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=39.8 pTM=0.279 ipTM=0.222 tol=7.18
2024-12-08 11:40:57,539 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=40.7 pTM=0.278 ipTM=0.222 tol=9.2
2024-12-08 11:40:57,542 alphafold2_multimer_v3_model_1_seed_000 took 9042.1s (30 recycles)
2024-12-08 11:45:47,778 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=39.3 pTM=0.275 ipTM=0.208
2024-12-08 11:50:34,435 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=39.2 pTM=0.272 ipTM=0.207 tol=24.4
2024-12-08 11:55:21,015 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=39.2 pTM=0.273 ipTM=0.212 tol=13.1
2024-12-08 12:00:07,536 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=38.6 pTM=0.274 ipTM=0.217 tol=12.6
2024-12-08 12:04:54,000 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=39.3 pTM=0.273 ipTM=0.216 tol=16.3
2024-12-08 12:09:40,462 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=39.1 pTM=0.271 ipTM=0.214 tol=13.8
2024-12-08 12:14:26,912 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=39.7 pTM=0.273 ipTM=0.216 tol=10.8
2024-12-08 12:19:13,304 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=39.5 pTM=0.271 ipTM=0.214 tol=10.1
2024-12-08 12:23:59,668 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=39.4 pTM=0.273 ipTM=0.216 tol=12.8
2024-12-08 12:28:45,993 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=39.3 pTM=0.274 ipTM=0.217 tol=9.42
2024-12-08 12:33:32,329 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=39.6 pTM=0.274 ipTM=0.219 tol=10.7
2024-12-08 12:38:18,656 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=39.9 pTM=0.275 ipTM=0.221 tol=10.7
2024-12-08 12:43:04,896 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=39.8 pTM=0.275 ipTM=0.221 tol=9.34
2024-12-08 12:47:51,138 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=39.8 pTM=0.274 ipTM=0.22 tol=7.9
2024-12-08 12:52:37,564 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=40 pTM=0.275 ipTM=0.218 tol=6.93
2024-12-08 12:57:23,872 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=39.9 pTM=0.274 ipTM=0.217 tol=8.34
2024-12-08 13:02:10,202 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=40.2 pTM=0.275 ipTM=0.215 tol=9.21
2024-12-08 13:06:56,619 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=40.5 pTM=0.273 ipTM=0.213 tol=7.83
2024-12-08 13:11:42,965 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=40.3 pTM=0.276 ipTM=0.215 tol=7.22
2024-12-08 13:16:29,273 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=40.3 pTM=0.275 ipTM=0.216 tol=9.12
2024-12-08 13:21:15,547 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=40.1 pTM=0.276 ipTM=0.215 tol=8.61
2024-12-08 13:26:01,898 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=40 pTM=0.273 ipTM=0.215 tol=8.45
2024-12-08 13:30:48,324 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=40.2 pTM=0.275 ipTM=0.214 tol=10.2
2024-12-08 13:35:34,725 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=40.8 pTM=0.272 ipTM=0.214 tol=11.5
2024-12-08 13:40:21,087 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=40.1 pTM=0.273 ipTM=0.216 tol=9.83
2024-12-08 13:45:07,367 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=40.1 pTM=0.275 ipTM=0.219 tol=6.2
2024-12-08 13:49:53,661 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=39.9 pTM=0.276 ipTM=0.219 tol=6.7
2024-12-08 13:54:40,015 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=40.1 pTM=0.275 ipTM=0.216 tol=6.51
2024-12-08 13:59:26,301 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=39.7 pTM=0.276 ipTM=0.216 tol=10
2024-12-08 14:04:12,567 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=40.1 pTM=0.277 ipTM=0.216 tol=12.1
2024-12-08 14:08:58,870 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=40 pTM=0.275 ipTM=0.218 tol=13.7
2024-12-08 14:08:58,873 alphafold2_multimer_v3_model_2_seed_000 took 8877.8s (30 recycles)
2024-12-08 14:13:49,479 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=39.9 pTM=0.276 ipTM=0.258
2024-12-08 14:18:36,916 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=39.6 pTM=0.281 ipTM=0.234 tol=20.3
2024-12-08 14:23:24,381 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=39.9 pTM=0.282 ipTM=0.232 tol=16.7
2024-12-08 14:28:11,800 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=39.9 pTM=0.284 ipTM=0.223 tol=13.5
2024-12-08 14:32:59,078 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=41.2 pTM=0.286 ipTM=0.247 tol=11.9
2024-12-08 14:37:46,101 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=41.6 pTM=0.288 ipTM=0.251 tol=8.87
2024-12-08 14:42:33,076 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=42.8 pTM=0.291 ipTM=0.272 tol=6.73
2024-12-08 14:47:20,084 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=43 pTM=0.291 ipTM=0.274 tol=5.5
2024-12-08 14:52:06,991 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=43 pTM=0.293 ipTM=0.286 tol=5.15
2024-12-08 14:56:53,892 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=42.8 pTM=0.294 ipTM=0.272 tol=6.3
2024-12-08 15:01:40,963 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=43.1 pTM=0.293 ipTM=0.273 tol=5.13
2024-12-08 15:06:27,988 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=43.3 pTM=0.294 ipTM=0.275 tol=5.25
2024-12-08 15:11:15,028 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=42.7 pTM=0.295 ipTM=0.275 tol=4.26
2024-12-08 15:16:01,984 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=43.5 pTM=0.297 ipTM=0.285 tol=3.78
2024-12-08 15:20:48,940 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=43.1 pTM=0.298 ipTM=0.286 tol=3.85
2024-12-08 15:25:35,967 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=42.9 pTM=0.297 ipTM=0.28 tol=4.55
2024-12-08 15:30:22,948 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=43.2 pTM=0.299 ipTM=0.279 tol=3.46
2024-12-08 15:35:09,957 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=43.4 pTM=0.298 ipTM=0.279 tol=4.12
2024-12-08 15:39:57,044 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=43.4 pTM=0.298 ipTM=0.281 tol=4.08
2024-12-08 15:44:43,960 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=43.3 pTM=0.298 ipTM=0.283 tol=4.28
2024-12-08 15:49:30,848 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=43.8 pTM=0.297 ipTM=0.289 tol=10.4
2024-12-08 15:54:17,753 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=43 pTM=0.298 ipTM=0.289 tol=10.6
2024-12-08 15:59:04,739 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=43.5 pTM=0.297 ipTM=0.275 tol=5.96
2024-12-08 16:03:51,846 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=43.2 pTM=0.295 ipTM=0.273 tol=7.29
2024-12-08 16:08:38,879 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=43.1 pTM=0.297 ipTM=0.268 tol=6.23
2024-12-08 16:13:25,843 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=43.2 pTM=0.296 ipTM=0.271 tol=4.89
2024-12-08 16:18:12,769 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=43.3 pTM=0.295 ipTM=0.285 tol=5.96
2024-12-08 16:22:59,625 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=43.1 pTM=0.298 ipTM=0.286 tol=4.56
2024-12-08 16:27:46,489 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=43.6 pTM=0.298 ipTM=0.288 tol=3.42
2024-12-08 16:32:33,439 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=43.3 pTM=0.297 ipTM=0.281 tol=4.42
2024-12-08 16:37:20,399 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=43.6 pTM=0.296 ipTM=0.279 tol=7.76
2024-12-08 16:37:20,402 alphafold2_multimer_v3_model_3_seed_000 took 8898.0s (30 recycles)
2024-12-08 16:42:12,054 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=39.3 pTM=0.285 ipTM=0.256
2024-12-08 16:47:00,526 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=38.7 pTM=0.271 ipTM=0.205 tol=21
2024-12-08 16:51:49,124 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=38 pTM=0.271 ipTM=0.206 tol=18.2
2024-12-08 16:56:37,665 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=38.6 pTM=0.268 ipTM=0.199 tol=20.7
2024-12-08 17:01:26,184 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=38.5 pTM=0.27 ipTM=0.199 tol=14.2
2024-12-08 17:06:14,555 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=38.7 pTM=0.27 ipTM=0.198 tol=15.5
2024-12-08 17:11:02,774 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=39.2 pTM=0.27 ipTM=0.197 tol=10.2
2024-12-08 17:15:51,082 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=39.1 pTM=0.272 ipTM=0.198 tol=10.8
2024-12-08 17:20:39,278 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=39.3 pTM=0.271 ipTM=0.197 tol=12.7
2024-12-08 17:25:27,421 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=39.6 pTM=0.273 ipTM=0.198 tol=11
2024-12-08 17:30:15,578 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=39.3 pTM=0.273 ipTM=0.198 tol=13.4
2024-12-08 17:35:03,831 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=39.1 pTM=0.274 ipTM=0.199 tol=16.9
2024-12-08 17:39:52,089 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=39.3 pTM=0.275 ipTM=0.201 tol=15.6
2024-12-08 17:44:40,331 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=39.6 pTM=0.276 ipTM=0.201 tol=11.7
2024-12-08 17:49:28,568 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=39.7 pTM=0.277 ipTM=0.202 tol=16.8
2024-12-08 17:54:16,831 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=39.7 pTM=0.274 ipTM=0.198 tol=12.4
2024-12-08 17:59:05,120 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=39.6 pTM=0.276 ipTM=0.2 tol=8.12
2024-12-08 18:03:53,208 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=39.5 pTM=0.276 ipTM=0.2 tol=9.96
2024-12-08 18:08:41,351 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=39.4 pTM=0.276 ipTM=0.2 tol=12.7
2024-12-08 18:13:29,476 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=39.8 pTM=0.277 ipTM=0.2 tol=9.88
2024-12-08 18:18:17,588 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=39.6 pTM=0.279 ipTM=0.201 tol=10.3
2024-12-08 18:23:05,646 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=39.9 pTM=0.28 ipTM=0.2 tol=11.8
2024-12-08 18:27:53,584 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=39.7 pTM=0.281 ipTM=0.203 tol=9.45
2024-12-08 18:32:41,615 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=40 pTM=0.281 ipTM=0.201 tol=12.2
2024-12-08 18:37:29,661 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=40 pTM=0.279 ipTM=0.199 tol=10.9
2024-12-08 18:42:17,461 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=40.2 pTM=0.28 ipTM=0.202 tol=7.34
2024-12-08 18:47:05,502 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=40.1 pTM=0.279 ipTM=0.199 tol=9.23
2024-12-08 18:51:53,545 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=40.3 pTM=0.279 ipTM=0.2 tol=8.33
2024-12-08 18:56:41,575 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=40 pTM=0.279 ipTM=0.2 tol=7.53
2024-12-08 19:01:29,667 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=40.2 pTM=0.279 ipTM=0.2 tol=6.91
2024-12-08 19:06:17,795 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=40 pTM=0.279 ipTM=0.201 tol=7.02
2024-12-08 19:06:17,799 alphafold2_multimer_v3_model_4_seed_000 took 8933.9s (30 recycles)
2024-12-08 19:11:08,985 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=37.2 pTM=0.274 ipTM=0.221
2024-12-08 19:15:56,750 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=38.3 pTM=0.274 ipTM=0.223 tol=24.8
2024-12-08 19:20:44,250 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=39 pTM=0.278 ipTM=0.213 tol=23.2
2024-12-08 19:25:31,720 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=39.2 pTM=0.279 ipTM=0.211 tol=22.9
2024-12-08 19:30:19,068 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=39.8 pTM=0.278 ipTM=0.21 tol=18.6
2024-12-08 19:35:06,322 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=40.2 pTM=0.278 ipTM=0.211 tol=14.1
2024-12-08 19:39:53,529 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=40.8 pTM=0.28 ipTM=0.212 tol=10.4
2024-12-08 19:44:40,662 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=41.3 pTM=0.281 ipTM=0.213 tol=10.2
2024-12-08 19:49:27,790 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=41.1 pTM=0.281 ipTM=0.213 tol=10.7
2024-12-08 19:54:15,007 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=41.4 pTM=0.281 ipTM=0.21 tol=13.4
2024-12-08 19:59:02,205 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=41.5 pTM=0.283 ipTM=0.211 tol=13
2024-12-08 20:03:49,494 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=41.5 pTM=0.282 ipTM=0.21 tol=8.93
2024-12-08 20:08:36,691 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=41.8 pTM=0.282 ipTM=0.209 tol=12.2
2024-12-08 20:13:23,921 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=41.9 pTM=0.283 ipTM=0.207 tol=11.8
2024-12-08 20:18:11,098 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=42.1 pTM=0.284 ipTM=0.21 tol=10.7
2024-12-08 20:22:58,348 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=41.5 pTM=0.285 ipTM=0.212 tol=8.88
2024-12-08 20:27:45,617 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=41.5 pTM=0.285 ipTM=0.212 tol=12.5
2024-12-08 20:32:32,829 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=42 pTM=0.286 ipTM=0.215 tol=12.5
2024-12-08 20:37:20,003 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=41.8 pTM=0.286 ipTM=0.216 tol=14.8
2024-12-08 20:42:07,265 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=41.7 pTM=0.287 ipTM=0.223 tol=15.4
2024-12-08 20:46:54,410 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=41.6 pTM=0.292 ipTM=0.238 tol=12.3
2024-12-08 20:51:41,598 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=41.6 pTM=0.298 ipTM=0.256 tol=14.2
2024-12-08 20:56:28,696 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=42.1 pTM=0.294 ipTM=0.245 tol=14.8
2024-12-08 21:01:15,802 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=42.3 pTM=0.3 ipTM=0.263 tol=11.9
2024-12-08 21:06:02,943 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=42.2 pTM=0.297 ipTM=0.25 tol=11.6
2024-12-08 21:10:49,951 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=42.3 pTM=0.301 ipTM=0.261 tol=13.3
2024-12-08 21:15:37,107 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=41.9 pTM=0.298 ipTM=0.256 tol=11.6
2024-12-08 21:20:24,276 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=42.3 pTM=0.301 ipTM=0.267 tol=9.77
2024-12-08 21:25:11,299 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=42.2 pTM=0.299 ipTM=0.254 tol=12.8
2024-12-08 21:29:58,506 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=41.7 pTM=0.297 ipTM=0.248 tol=13.4
2024-12-08 21:34:45,601 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=42.7 pTM=0.301 ipTM=0.261 tol=9.96
2024-12-08 21:34:45,604 alphafold2_multimer_v3_model_5_seed_000 took 8904.3s (30 recycles)
2024-12-08 21:34:49,125 reranking models by 'multimer' metric
2024-12-08 21:34:53,821 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 21:46:50,135 Relaxation took 721.0s
2024-12-08 21:46:50,136 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=43.6 pTM=0.296 ipTM=0.279
2024-12-08 21:52:54,814 Relaxation took 364.7s
2024-12-08 21:52:54,815 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=42.7 pTM=0.301 ipTM=0.261
2024-12-08 22:00:53,485 Relaxation took 478.7s
2024-12-08 22:00:53,485 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=40.7 pTM=0.278 ipTM=0.222
2024-12-08 23:25:00,830 Relaxation took 5047.3s
2024-12-08 23:25:00,831 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=40 pTM=0.275 ipTM=0.218
2024-12-08 23:32:43,619 Relaxation took 462.8s
2024-12-08 23:32:43,620 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=40 pTM=0.279 ipTM=0.201
2024-12-08 23:32:51,158 Done