2024-12-08 10:11:44,208 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 10:11:44,587 Running on GPU
2024-12-08 10:11:48,081 Found 6 citations for tools or databases
2024-12-08 10:11:48,081 Query 1/1: RNF41_SRR (length 657)
2024-12-08 10:11:49,776 Sleeping for 5s. Reason: PENDING
2024-12-08 10:11:55,029 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:12:05,287 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:12:11,542 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:12:20,800 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:12:27,059 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:12:37,318 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:12:43,583 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:12:49,866 Sleeping for 8s. Reason: RUNNING
2024-12-08 10:12:58,121 Sleeping for 8s. Reason: RUNNING
2024-12-08 10:13:06,384 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:13:16,649 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:13:30,593 Setting max_seq=508, max_extra_seq=2048
2024-12-08 10:17:17,866 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=84.6 pTM=0.531 ipTM=0.104
2024-12-08 10:17:29,248 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.8 pTM=0.534 ipTM=0.112 tol=5.25
2024-12-08 10:17:40,628 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.6 pTM=0.534 ipTM=0.116 tol=1.9
2024-12-08 10:17:52,003 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.1 pTM=0.533 ipTM=0.117 tol=2.47
2024-12-08 10:18:03,401 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.2 pTM=0.536 ipTM=0.126 tol=1.27
2024-12-08 10:18:14,793 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.9 pTM=0.536 ipTM=0.127 tol=1.01
2024-12-08 10:18:26,200 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.2 pTM=0.535 ipTM=0.125 tol=1.69
2024-12-08 10:18:37,615 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.2 pTM=0.534 ipTM=0.126 tol=1.99
2024-12-08 10:18:49,027 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83 pTM=0.536 ipTM=0.128 tol=1.28
2024-12-08 10:19:00,437 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83.1 pTM=0.536 ipTM=0.128 tol=1.23
2024-12-08 10:19:11,851 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83.1 pTM=0.535 ipTM=0.126 tol=1.06
2024-12-08 10:19:23,283 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=83 pTM=0.536 ipTM=0.127 tol=0.784
2024-12-08 10:19:34,711 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=83.6 pTM=0.535 ipTM=0.128 tol=1.46
2024-12-08 10:19:46,138 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=83.4 pTM=0.535 ipTM=0.13 tol=1.14
2024-12-08 10:19:57,565 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=83.6 pTM=0.536 ipTM=0.132 tol=0.577
2024-12-08 10:20:09,006 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=83.4 pTM=0.535 ipTM=0.13 tol=0.912
2024-12-08 10:20:20,428 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=83.4 pTM=0.536 ipTM=0.131 tol=1.09
2024-12-08 10:20:31,860 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=83.2 pTM=0.537 ipTM=0.132 tol=1.14
2024-12-08 10:20:43,294 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=83.1 pTM=0.536 ipTM=0.134 tol=0.881
2024-12-08 10:20:54,723 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=83.2 pTM=0.537 ipTM=0.134 tol=0.925
2024-12-08 10:21:06,161 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=83.5 pTM=0.537 ipTM=0.136 tol=1.01
2024-12-08 10:21:17,597 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=83.3 pTM=0.537 ipTM=0.132 tol=0.856
2024-12-08 10:21:29,028 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=83.5 pTM=0.537 ipTM=0.137 tol=0.969
2024-12-08 10:21:40,454 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=83.3 pTM=0.537 ipTM=0.131 tol=1.03
2024-12-08 10:21:51,884 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=83.4 pTM=0.537 ipTM=0.129 tol=1.35
2024-12-08 10:22:03,310 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=83.2 pTM=0.536 ipTM=0.127 tol=0.847
2024-12-08 10:22:14,734 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=83.2 pTM=0.538 ipTM=0.137 tol=0.638
2024-12-08 10:22:26,175 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=83 pTM=0.537 ipTM=0.141 tol=0.914
2024-12-08 10:22:37,621 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=83.2 pTM=0.538 ipTM=0.138 tol=0.739
2024-12-08 10:22:49,063 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=83.1 pTM=0.536 ipTM=0.133 tol=0.725
2024-12-08 10:23:00,490 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=83.4 pTM=0.536 ipTM=0.129 tol=0.935
2024-12-08 10:23:00,491 alphafold2_multimer_v3_model_1_seed_000 took 563.3s (30 recycles)
2024-12-08 10:23:12,277 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.5 pTM=0.532 ipTM=0.112
2024-12-08 10:23:23,699 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.9 pTM=0.536 ipTM=0.154 tol=6.64
2024-12-08 10:23:35,148 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84 pTM=0.533 ipTM=0.156 tol=3.48
2024-12-08 10:23:46,593 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.2 pTM=0.531 ipTM=0.148 tol=2.89
2024-12-08 10:23:58,044 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.4 pTM=0.531 ipTM=0.151 tol=2.55
2024-12-08 10:24:09,493 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.2 pTM=0.532 ipTM=0.144 tol=2.08
2024-12-08 10:24:20,932 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.5 pTM=0.533 ipTM=0.148 tol=2.14
2024-12-08 10:24:32,372 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.8 pTM=0.533 ipTM=0.147 tol=2.56
2024-12-08 10:24:43,813 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.6 pTM=0.533 ipTM=0.142 tol=1.19
2024-12-08 10:24:55,265 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=84.6 pTM=0.533 ipTM=0.14 tol=0.801
2024-12-08 10:25:06,703 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.6 pTM=0.532 ipTM=0.133 tol=0.809
2024-12-08 10:25:18,144 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=84.7 pTM=0.532 ipTM=0.137 tol=0.634
2024-12-08 10:25:29,578 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=84.6 pTM=0.532 ipTM=0.129 tol=1.87
2024-12-08 10:25:41,029 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=84.6 pTM=0.532 ipTM=0.129 tol=0.996
2024-12-08 10:25:52,476 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=84.9 pTM=0.533 ipTM=0.13 tol=0.816
2024-12-08 10:26:03,910 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=84.9 pTM=0.531 ipTM=0.129 tol=0.811
2024-12-08 10:26:15,366 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=84.8 pTM=0.532 ipTM=0.124 tol=2.92
2024-12-08 10:26:26,806 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=84.8 pTM=0.532 ipTM=0.129 tol=1.75
2024-12-08 10:26:38,244 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=84.9 pTM=0.532 ipTM=0.129 tol=1.72
2024-12-08 10:26:49,683 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=84.8 pTM=0.532 ipTM=0.135 tol=1.09
2024-12-08 10:27:01,127 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=84.8 pTM=0.532 ipTM=0.133 tol=0.372
2024-12-08 10:27:01,127 alphafold2_multimer_v3_model_2_seed_000 took 240.3s (20 recycles)
2024-12-08 10:27:12,903 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.8 pTM=0.521 ipTM=0.116
2024-12-08 10:27:24,334 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.8 pTM=0.529 ipTM=0.149 tol=3.1
2024-12-08 10:27:35,763 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.7 pTM=0.528 ipTM=0.139 tol=4.82
2024-12-08 10:27:47,226 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.9 pTM=0.53 ipTM=0.144 tol=1.41
2024-12-08 10:27:58,664 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84.9 pTM=0.531 ipTM=0.149 tol=2.11
2024-12-08 10:28:10,094 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.9 pTM=0.531 ipTM=0.147 tol=0.558
2024-12-08 10:28:21,521 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85 pTM=0.531 ipTM=0.145 tol=1.27
2024-12-08 10:28:32,967 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85 pTM=0.531 ipTM=0.149 tol=0.601
2024-12-08 10:28:44,401 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.9 pTM=0.53 ipTM=0.147 tol=1.48
2024-12-08 10:28:55,837 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=85 pTM=0.531 ipTM=0.145 tol=1.06
2024-12-08 10:29:07,277 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=84.9 pTM=0.53 ipTM=0.145 tol=1.77
2024-12-08 10:29:18,703 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=85 pTM=0.53 ipTM=0.145 tol=0.442
2024-12-08 10:29:18,703 alphafold2_multimer_v3_model_3_seed_000 took 137.2s (11 recycles)
2024-12-08 10:29:30,493 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.4 pTM=0.537 ipTM=0.147
2024-12-08 10:29:41,891 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.8 pTM=0.553 ipTM=0.187 tol=8.88
2024-12-08 10:29:53,325 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84.3 pTM=0.528 ipTM=0.104 tol=6.01
2024-12-08 10:30:04,777 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.8 pTM=0.531 ipTM=0.147 tol=15.3
2024-12-08 10:30:16,206 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.8 pTM=0.537 ipTM=0.159 tol=4.4
2024-12-08 10:30:27,615 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.6 pTM=0.538 ipTM=0.165 tol=0.862
2024-12-08 10:30:39,034 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.8 pTM=0.539 ipTM=0.163 tol=1.04
2024-12-08 10:30:50,439 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83.7 pTM=0.538 ipTM=0.162 tol=0.56
2024-12-08 10:31:01,856 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.8 pTM=0.54 ipTM=0.165 tol=0.753
2024-12-08 10:31:13,279 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.9 pTM=0.539 ipTM=0.159 tol=0.833
2024-12-08 10:31:24,695 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.8 pTM=0.539 ipTM=0.162 tol=0.621
2024-12-08 10:31:36,112 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.9 pTM=0.539 ipTM=0.159 tol=0.458
2024-12-08 10:31:36,112 alphafold2_multimer_v3_model_4_seed_000 took 137.1s (11 recycles)
2024-12-08 10:31:47,873 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.5 pTM=0.54 ipTM=0.15
2024-12-08 10:31:59,330 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=83.1 pTM=0.536 ipTM=0.134 tol=3.49
2024-12-08 10:32:10,774 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83.4 pTM=0.533 ipTM=0.141 tol=5.23
2024-12-08 10:32:22,223 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84 pTM=0.533 ipTM=0.149 tol=7.16
2024-12-08 10:32:33,672 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.3 pTM=0.536 ipTM=0.155 tol=2.28
2024-12-08 10:32:45,120 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=84.4 pTM=0.536 ipTM=0.154 tol=1.73
2024-12-08 10:32:56,566 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=84.6 pTM=0.537 ipTM=0.154 tol=1.52
2024-12-08 10:33:08,002 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84.6 pTM=0.537 ipTM=0.156 tol=0.66
2024-12-08 10:33:19,440 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=84.6 pTM=0.537 ipTM=0.154 tol=0.744
2024-12-08 10:33:30,868 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=84.5 pTM=0.537 ipTM=0.154 tol=0.736
2024-12-08 10:33:42,304 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=84.6 pTM=0.537 ipTM=0.152 tol=1.02
2024-12-08 10:33:53,739 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=84.5 pTM=0.536 ipTM=0.152 tol=0.582
2024-12-08 10:34:05,179 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=84.4 pTM=0.538 ipTM=0.155 tol=0.779
2024-12-08 10:34:16,614 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=84.6 pTM=0.538 ipTM=0.156 tol=0.549
2024-12-08 10:34:28,044 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=84.3 pTM=0.537 ipTM=0.154 tol=0.546
2024-12-08 10:34:39,473 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=84.5 pTM=0.537 ipTM=0.156 tol=0.783
2024-12-08 10:34:50,895 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=84.6 pTM=0.538 ipTM=0.157 tol=0.603
2024-12-08 10:35:02,316 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=84.6 pTM=0.538 ipTM=0.158 tol=0.737
2024-12-08 10:35:13,744 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=84.6 pTM=0.539 ipTM=0.16 tol=0.856
2024-12-08 10:35:25,175 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=84.6 pTM=0.537 ipTM=0.158 tol=0.52
2024-12-08 10:35:36,602 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=84.6 pTM=0.539 ipTM=0.16 tol=0.793
2024-12-08 10:35:48,026 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=84.6 pTM=0.538 ipTM=0.156 tol=0.669
2024-12-08 10:35:59,446 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=84.6 pTM=0.539 ipTM=0.158 tol=0.596
2024-12-08 10:36:10,870 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=84.4 pTM=0.536 ipTM=0.156 tol=0.5
2024-12-08 10:36:10,871 alphafold2_multimer_v3_model_5_seed_000 took 274.4s (23 recycles)
2024-12-08 10:36:11,225 reranking models by 'multimer' metric
2024-12-08 10:36:14,188 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 10:36:45,191 Relaxation took 34.0s
2024-12-08 10:36:45,191 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.9 pTM=0.539 ipTM=0.159
2024-12-08 10:37:05,975 Relaxation took 20.8s
2024-12-08 10:37:05,975 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.4 pTM=0.536 ipTM=0.156
2024-12-08 10:37:26,714 Relaxation took 20.7s
2024-12-08 10:37:26,714 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85 pTM=0.53 ipTM=0.145
2024-12-08 10:38:00,324 Relaxation took 33.6s
2024-12-08 10:38:00,324 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.8 pTM=0.532 ipTM=0.133
2024-12-08 10:39:33,130 Relaxation took 92.8s
2024-12-08 10:39:33,130 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.4 pTM=0.536 ipTM=0.129
2024-12-08 10:39:34,773 Done