2024-12-08 10:12:47,276 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 10:12:47,589 Running on GPU
2024-12-08 10:12:49,621 Found 6 citations for tools or databases
2024-12-08 10:12:49,621 Query 1/1: RNF41_VPS52 (length 1040)
2024-12-08 10:12:49,893 Sleeping for 9s. Reason: PENDING
2024-12-08 10:12:59,149 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:13:05,411 Sleeping for 5s. Reason: RUNNING
2024-12-08 10:13:10,677 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:13:16,930 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:13:27,185 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:13:36,442 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:13:46,707 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:13:53,965 Sleeping for 5s. Reason: RUNNING
2024-12-08 10:13:59,225 Sleeping for 8s. Reason: RUNNING
2024-12-08 10:14:07,485 Sleeping for 5s. Reason: RUNNING
2024-12-08 10:14:12,739 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:14:19,992 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:14:26,246 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:14:32,506 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:14:41,306 Sleeping for 9s. Reason: PENDING
2024-12-08 10:14:50,569 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:15:00,834 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:15:11,092 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:15:18,352 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:15:25,608 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:15:34,864 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:15:41,157 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:15:50,550 Setting max_seq=508, max_extra_seq=2048
2024-12-08 10:18:01,819 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.1 pTM=0.544 ipTM=0.14
2024-12-08 10:18:21,836 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.6 pTM=0.552 ipTM=0.147 tol=19.3
2024-12-08 10:18:41,962 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.8 pTM=0.555 ipTM=0.16 tol=20.2
2024-12-08 10:19:02,156 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.3 pTM=0.567 ipTM=0.196 tol=4.77
2024-12-08 10:19:22,403 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.1 pTM=0.575 ipTM=0.222 tol=5.19
2024-12-08 10:19:42,714 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.1 pTM=0.57 ipTM=0.207 tol=3.65
2024-12-08 10:20:03,013 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78.1 pTM=0.575 ipTM=0.222 tol=2.42
2024-12-08 10:20:23,334 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=78.1 pTM=0.57 ipTM=0.207 tol=2.21
2024-12-08 10:20:43,686 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=78.1 pTM=0.577 ipTM=0.232 tol=2.76
2024-12-08 10:21:04,057 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=78.2 pTM=0.58 ipTM=0.238 tol=1.65
2024-12-08 10:21:24,413 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=78.2 pTM=0.579 ipTM=0.235 tol=5.26
2024-12-08 10:21:44,800 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=77.9 pTM=0.572 ipTM=0.215 tol=3.06
2024-12-08 10:22:05,211 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=78 pTM=0.576 ipTM=0.228 tol=2.8
2024-12-08 10:22:25,619 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=77.6 pTM=0.572 ipTM=0.212 tol=3.23
2024-12-08 10:22:46,016 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=77.8 pTM=0.577 ipTM=0.228 tol=3.49
2024-12-08 10:23:06,435 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=77.9 pTM=0.58 ipTM=0.242 tol=3.24
2024-12-08 10:23:26,879 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=77.9 pTM=0.583 ipTM=0.249 tol=2.98
2024-12-08 10:23:47,317 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=77.8 pTM=0.578 ipTM=0.238 tol=2.63
2024-12-08 10:24:07,776 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=77.9 pTM=0.587 ipTM=0.259 tol=2.22
2024-12-08 10:24:28,228 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=77.9 pTM=0.574 ipTM=0.226 tol=4.61
2024-12-08 10:24:48,658 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=77.9 pTM=0.581 ipTM=0.241 tol=2.6
2024-12-08 10:25:09,089 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=77.9 pTM=0.583 ipTM=0.256 tol=1.68
2024-12-08 10:25:29,528 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=77.8 pTM=0.579 ipTM=0.24 tol=2.68
2024-12-08 10:25:49,961 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=77.8 pTM=0.578 ipTM=0.231 tol=2.67
2024-12-08 10:26:10,343 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=77.8 pTM=0.58 ipTM=0.243 tol=2.19
2024-12-08 10:26:30,726 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=77.7 pTM=0.585 ipTM=0.263 tol=2.27
2024-12-08 10:26:51,106 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=78.2 pTM=0.592 ipTM=0.281 tol=3.03
2024-12-08 10:27:11,530 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=78.2 pTM=0.586 ipTM=0.258 tol=2.3
2024-12-08 10:27:31,930 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=78.1 pTM=0.583 ipTM=0.259 tol=2.68
2024-12-08 10:27:52,333 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=78.2 pTM=0.589 ipTM=0.273 tol=2.72
2024-12-08 10:28:12,747 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=77.7 pTM=0.582 ipTM=0.25 tol=1.92
2024-12-08 10:28:12,748 alphafold2_multimer_v3_model_1_seed_000 took 737.4s (30 recycles)
2024-12-08 10:28:34,003 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.2 pTM=0.54 ipTM=0.135
2024-12-08 10:28:54,592 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.2 pTM=0.54 ipTM=0.138 tol=22
2024-12-08 10:29:15,188 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=76.4 pTM=0.547 ipTM=0.155 tol=12.5
2024-12-08 10:29:35,826 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=76.6 pTM=0.546 ipTM=0.149 tol=6.47
2024-12-08 10:29:56,481 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.9 pTM=0.544 ipTM=0.147 tol=4.63
2024-12-08 10:30:17,125 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77 pTM=0.541 ipTM=0.149 tol=5.23
2024-12-08 10:30:37,768 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77 pTM=0.543 ipTM=0.145 tol=3.66
2024-12-08 10:30:58,440 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=77.2 pTM=0.542 ipTM=0.142 tol=2.5
2024-12-08 10:31:19,078 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=77.1 pTM=0.542 ipTM=0.145 tol=3.17
2024-12-08 10:31:39,720 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=77.2 pTM=0.542 ipTM=0.144 tol=2.9
2024-12-08 10:32:00,367 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=76.7 pTM=0.538 ipTM=0.141 tol=2.71
2024-12-08 10:32:21,009 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=77.1 pTM=0.539 ipTM=0.143 tol=3.67
2024-12-08 10:32:41,658 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=77 pTM=0.539 ipTM=0.139 tol=2.9
2024-12-08 10:33:02,279 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=76.6 pTM=0.539 ipTM=0.141 tol=4.06
2024-12-08 10:33:22,886 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=77.1 pTM=0.54 ipTM=0.139 tol=4.95
2024-12-08 10:33:43,497 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=76.8 pTM=0.54 ipTM=0.143 tol=3.54
2024-12-08 10:34:04,112 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=76.5 pTM=0.54 ipTM=0.143 tol=6.57
2024-12-08 10:34:24,740 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=77 pTM=0.539 ipTM=0.139 tol=4.04
2024-12-08 10:34:45,382 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=76.6 pTM=0.538 ipTM=0.14 tol=2.71
2024-12-08 10:35:06,002 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=76.4 pTM=0.536 ipTM=0.138 tol=3.69
2024-12-08 10:35:26,613 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=76.8 pTM=0.538 ipTM=0.144 tol=2.73
2024-12-08 10:35:47,221 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=76.6 pTM=0.537 ipTM=0.143 tol=4.55
2024-12-08 10:36:07,850 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=76.8 pTM=0.538 ipTM=0.139 tol=3.37
2024-12-08 10:36:28,482 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=76.8 pTM=0.54 ipTM=0.141 tol=4.74
2024-12-08 10:36:49,100 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=76.6 pTM=0.536 ipTM=0.14 tol=5.77
2024-12-08 10:37:09,689 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=76.6 pTM=0.535 ipTM=0.14 tol=3.18
2024-12-08 10:37:30,306 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=76.7 pTM=0.54 ipTM=0.142 tol=3.7
2024-12-08 10:37:50,892 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=76.4 pTM=0.54 ipTM=0.147 tol=4.93
2024-12-08 10:38:11,490 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=76.9 pTM=0.541 ipTM=0.144 tol=4.68
2024-12-08 10:38:32,085 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=76.8 pTM=0.543 ipTM=0.149 tol=2.59
2024-12-08 10:38:52,669 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=76.4 pTM=0.54 ipTM=0.148 tol=2.96
2024-12-08 10:38:52,670 alphafold2_multimer_v3_model_2_seed_000 took 639.3s (30 recycles)
2024-12-08 10:39:13,834 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.8 pTM=0.542 ipTM=0.138
2024-12-08 10:39:34,392 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.1 pTM=0.546 ipTM=0.142 tol=21.1
2024-12-08 10:39:54,783 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.6 pTM=0.619 ipTM=0.441 tol=19.1
2024-12-08 10:40:15,134 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.9 pTM=0.624 ipTM=0.427 tol=2.33
2024-12-08 10:40:35,488 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.9 pTM=0.623 ipTM=0.436 tol=1.22
2024-12-08 10:40:55,853 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.7 pTM=0.622 ipTM=0.433 tol=1.26
2024-12-08 10:41:16,216 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=81.1 pTM=0.63 ipTM=0.442 tol=1.81
2024-12-08 10:41:36,587 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81 pTM=0.628 ipTM=0.443 tol=2.01
2024-12-08 10:41:56,953 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.9 pTM=0.62 ipTM=0.438 tol=1.71
2024-12-08 10:42:17,307 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.9 pTM=0.625 ipTM=0.439 tol=2.87
2024-12-08 10:42:37,660 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.9 pTM=0.623 ipTM=0.435 tol=3.42
2024-12-08 10:42:58,042 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.6 pTM=0.621 ipTM=0.437 tol=3.56
2024-12-08 10:43:18,401 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.7 pTM=0.62 ipTM=0.436 tol=2.91
2024-12-08 10:43:38,782 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.8 pTM=0.623 ipTM=0.435 tol=0.935
2024-12-08 10:43:59,161 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.6 pTM=0.624 ipTM=0.438 tol=2.88
2024-12-08 10:44:19,559 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80.6 pTM=0.622 ipTM=0.436 tol=0.81
2024-12-08 10:44:39,976 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=80.6 pTM=0.621 ipTM=0.436 tol=2.66
2024-12-08 10:45:00,400 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=80.5 pTM=0.623 ipTM=0.437 tol=2.64
2024-12-08 10:45:20,833 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.6 pTM=0.622 ipTM=0.434 tol=1.96
2024-12-08 10:45:41,240 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=80.7 pTM=0.624 ipTM=0.438 tol=0.901
2024-12-08 10:46:01,625 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.5 pTM=0.621 ipTM=0.429 tol=1.6
2024-12-08 10:46:22,034 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=80.4 pTM=0.622 ipTM=0.431 tol=2.8
2024-12-08 10:46:42,440 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80.4 pTM=0.617 ipTM=0.429 tol=2.29
2024-12-08 10:47:02,821 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.4 pTM=0.619 ipTM=0.431 tol=2.25
2024-12-08 10:47:23,208 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=80.4 pTM=0.618 ipTM=0.432 tol=1.77
2024-12-08 10:47:43,592 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=80.4 pTM=0.618 ipTM=0.43 tol=2.33
2024-12-08 10:48:03,960 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80.6 pTM=0.619 ipTM=0.436 tol=2.32
2024-12-08 10:48:24,329 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=80.8 pTM=0.623 ipTM=0.44 tol=1.2
2024-12-08 10:48:44,706 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=80.5 pTM=0.62 ipTM=0.432 tol=2
2024-12-08 10:49:05,105 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=80.8 pTM=0.626 ipTM=0.437 tol=2.53
2024-12-08 10:49:25,491 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=80.5 pTM=0.621 ipTM=0.428 tol=1.15
2024-12-08 10:49:25,492 alphafold2_multimer_v3_model_3_seed_000 took 632.2s (30 recycles)
2024-12-08 10:49:46,651 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73.9 pTM=0.541 ipTM=0.166
2024-12-08 10:50:07,169 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.2 pTM=0.548 ipTM=0.181 tol=11.5
2024-12-08 10:50:27,664 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.7 pTM=0.541 ipTM=0.166 tol=7.68
2024-12-08 10:50:48,165 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.9 pTM=0.537 ipTM=0.15 tol=4.41
2024-12-08 10:51:08,681 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.7 pTM=0.535 ipTM=0.15 tol=6.5
2024-12-08 10:51:29,187 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.7 pTM=0.535 ipTM=0.155 tol=7.15
2024-12-08 10:51:49,753 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.4 pTM=0.536 ipTM=0.154 tol=7.39
2024-12-08 10:52:10,313 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=74.7 pTM=0.535 ipTM=0.154 tol=9.62
2024-12-08 10:52:30,755 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=76.9 pTM=0.552 ipTM=0.247 tol=13.9
2024-12-08 10:52:51,105 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.6 pTM=0.592 ipTM=0.368 tol=7.16
2024-12-08 10:53:11,497 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.4 pTM=0.59 ipTM=0.355 tol=1.69
2024-12-08 10:53:31,940 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.5 pTM=0.589 ipTM=0.339 tol=1.75
2024-12-08 10:53:52,378 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.4 pTM=0.583 ipTM=0.342 tol=3.43
2024-12-08 10:54:12,795 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.3 pTM=0.583 ipTM=0.344 tol=2.07
2024-12-08 10:54:33,202 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.1 pTM=0.577 ipTM=0.334 tol=1.4
2024-12-08 10:54:53,604 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.1 pTM=0.58 ipTM=0.329 tol=0.809
2024-12-08 10:55:14,010 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.1 pTM=0.578 ipTM=0.332 tol=0.972
2024-12-08 10:55:34,412 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.2 pTM=0.582 ipTM=0.334 tol=1.06
2024-12-08 10:55:54,828 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.1 pTM=0.577 ipTM=0.322 tol=1.2
2024-12-08 10:56:15,221 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.5 pTM=0.591 ipTM=0.341 tol=1.6
2024-12-08 10:56:35,608 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=78.9 pTM=0.573 ipTM=0.304 tol=2.34
2024-12-08 10:56:55,992 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=78.8 pTM=0.575 ipTM=0.316 tol=2.67
2024-12-08 10:57:16,382 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=78.9 pTM=0.576 ipTM=0.31 tol=1.35
2024-12-08 10:57:36,776 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=79.1 pTM=0.578 ipTM=0.317 tol=0.821
2024-12-08 10:57:57,126 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=78.8 pTM=0.575 ipTM=0.311 tol=1.15
2024-12-08 10:58:17,488 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=78.6 pTM=0.568 ipTM=0.313 tol=1.02
2024-12-08 10:58:37,835 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79.2 pTM=0.574 ipTM=0.321 tol=1.5
2024-12-08 10:58:58,208 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80 pTM=0.594 ipTM=0.351 tol=0.93
2024-12-08 10:59:18,579 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=79.1 pTM=0.578 ipTM=0.326 tol=1.51
2024-12-08 10:59:38,995 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=79.4 pTM=0.581 ipTM=0.33 tol=1.62
2024-12-08 10:59:59,395 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=78.9 pTM=0.574 ipTM=0.31 tol=1.94
2024-12-08 10:59:59,396 alphafold2_multimer_v3_model_4_seed_000 took 633.2s (30 recycles)
2024-12-08 11:00:20,638 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.8 pTM=0.536 ipTM=0.139
2024-12-08 11:00:41,260 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=73.8 pTM=0.536 ipTM=0.127 tol=19.2
2024-12-08 11:01:01,862 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.9 pTM=0.537 ipTM=0.135 tol=5.91
2024-12-08 11:01:22,443 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.8 pTM=0.538 ipTM=0.14 tol=5.02
2024-12-08 11:01:42,998 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=74.8 pTM=0.54 ipTM=0.143 tol=7.1
2024-12-08 11:02:03,531 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=74.8 pTM=0.542 ipTM=0.144 tol=2.55
2024-12-08 11:02:24,052 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.3 pTM=0.543 ipTM=0.151 tol=3.19
2024-12-08 11:02:44,563 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.5 pTM=0.543 ipTM=0.149 tol=2.45
2024-12-08 11:03:05,063 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=75.7 pTM=0.543 ipTM=0.152 tol=3.6
2024-12-08 11:03:25,562 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=75.9 pTM=0.544 ipTM=0.154 tol=1.23
2024-12-08 11:03:46,052 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76 pTM=0.544 ipTM=0.155 tol=2.17
2024-12-08 11:04:06,534 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=75.7 pTM=0.543 ipTM=0.155 tol=2.14
2024-12-08 11:04:27,008 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=75.8 pTM=0.543 ipTM=0.152 tol=1.62
2024-12-08 11:04:47,492 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=75.9 pTM=0.544 ipTM=0.153 tol=4.58
2024-12-08 11:05:07,964 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=75.9 pTM=0.545 ipTM=0.154 tol=2.35
2024-12-08 11:05:28,442 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=75.4 pTM=0.542 ipTM=0.151 tol=1.87
2024-12-08 11:05:48,891 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=75.6 pTM=0.542 ipTM=0.151 tol=2.64
2024-12-08 11:06:09,342 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=75.4 pTM=0.544 ipTM=0.152 tol=1.53
2024-12-08 11:06:29,823 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=75.7 pTM=0.542 ipTM=0.151 tol=1.78
2024-12-08 11:06:50,280 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=75 pTM=0.543 ipTM=0.155 tol=4.26
2024-12-08 11:07:10,723 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=75.5 pTM=0.541 ipTM=0.15 tol=2.73
2024-12-08 11:07:31,186 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=75.2 pTM=0.542 ipTM=0.155 tol=2.39
2024-12-08 11:07:51,651 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=75.3 pTM=0.54 ipTM=0.15 tol=1.17
2024-12-08 11:08:12,124 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=75.1 pTM=0.542 ipTM=0.154 tol=1.69
2024-12-08 11:08:32,577 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=75.6 pTM=0.543 ipTM=0.155 tol=2.48
2024-12-08 11:08:53,028 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=75.2 pTM=0.54 ipTM=0.156 tol=2.56
2024-12-08 11:09:13,469 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=75.8 pTM=0.541 ipTM=0.156 tol=2.74
2024-12-08 11:09:33,917 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=75.4 pTM=0.544 ipTM=0.161 tol=2.15
2024-12-08 11:09:54,378 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=75.9 pTM=0.542 ipTM=0.155 tol=2.16
2024-12-08 11:10:14,807 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=75.6 pTM=0.546 ipTM=0.16 tol=1.4
2024-12-08 11:10:35,239 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=75.7 pTM=0.542 ipTM=0.16 tol=1.96
2024-12-08 11:10:35,240 alphafold2_multimer_v3_model_5_seed_000 took 635.2s (30 recycles)
2024-12-08 11:10:35,905 reranking models by 'multimer' metric
2024-12-08 11:10:37,485 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 11:11:15,535 Relaxation took 39.6s
2024-12-08 11:11:15,535 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.5 pTM=0.621 ipTM=0.428
2024-12-08 11:12:10,720 Relaxation took 55.2s
2024-12-08 11:12:10,720 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.9 pTM=0.574 ipTM=0.31
2024-12-08 11:12:55,790 Relaxation took 45.1s
2024-12-08 11:12:55,791 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=77.7 pTM=0.582 ipTM=0.25
2024-12-08 11:13:52,851 Relaxation took 57.1s
2024-12-08 11:13:52,851 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=75.7 pTM=0.542 ipTM=0.16
2024-12-08 11:14:48,895 Relaxation took 56.0s
2024-12-08 11:14:48,895 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.4 pTM=0.54 ipTM=0.148
2024-12-08 11:14:50,794 Done