2024-12-08 10:18:03,532 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 10:18:03,825 Running on GPU
2024-12-08 10:18:06,038 Found 6 citations for tools or databases
2024-12-08 10:18:06,039 Query 1/1: RNF4_YEATS2 (length 1612)
2024-12-08 10:18:06,307 Sleeping for 5s. Reason: PENDING
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2024-12-08 10:18:53,273 Sleeping for 5s. Reason: RUNNING
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2024-12-08 10:19:08,789 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:19:18,047 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:19:28,304 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:19:38,568 Sleeping for 5s. Reason: RUNNING
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2024-12-08 10:20:00,337 Sleeping for 5s. Reason: RUNNING
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2024-12-08 10:20:43,892 Sleeping for 5s. Reason: RUNNING
2024-12-08 10:20:49,147 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:21:01,308 Sleeping for 5s. Reason: PENDING
2024-12-08 10:21:06,563 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:21:15,817 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:21:25,077 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:21:34,338 Sleeping for 7s. Reason: RUNNING
2024-12-08 10:21:41,597 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:21:51,857 Sleeping for 9s. Reason: RUNNING
2024-12-08 10:22:01,115 Sleeping for 5s. Reason: RUNNING
2024-12-08 10:22:06,376 Sleeping for 8s. Reason: RUNNING
2024-12-08 10:22:14,639 Sleeping for 10s. Reason: RUNNING
2024-12-08 10:22:24,905 Sleeping for 6s. Reason: RUNNING
2024-12-08 10:22:31,162 Sleeping for 8s. Reason: RUNNING
2024-12-08 10:22:42,786 Setting max_seq=508, max_extra_seq=2048
2024-12-08 10:26:17,092 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=34.6 pTM=0.277 ipTM=0.226
2024-12-08 10:27:37,368 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=34.6 pTM=0.287 ipTM=0.345 tol=20.7
2024-12-08 10:28:57,771 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=33.7 pTM=0.275 ipTM=0.228 tol=20.6
2024-12-08 10:30:18,223 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=34.5 pTM=0.285 ipTM=0.32 tol=13.8
2024-12-08 10:31:38,694 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=34.8 pTM=0.277 ipTM=0.253 tol=11.1
2024-12-08 10:32:59,163 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=34.6 pTM=0.282 ipTM=0.288 tol=8.65
2024-12-08 10:34:19,585 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=34.7 pTM=0.279 ipTM=0.263 tol=7.02
2024-12-08 10:35:40,071 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=34.3 pTM=0.283 ipTM=0.316 tol=9.45
2024-12-08 10:37:00,534 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=34.8 pTM=0.277 ipTM=0.261 tol=9.89
2024-12-08 10:38:21,025 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=34.4 pTM=0.276 ipTM=0.259 tol=9.62
2024-12-08 10:39:41,486 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=34.5 pTM=0.277 ipTM=0.264 tol=9.86
2024-12-08 10:41:01,981 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=34.5 pTM=0.273 ipTM=0.247 tol=5.21
2024-12-08 10:42:22,437 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=34.3 pTM=0.287 ipTM=0.357 tol=4.82
2024-12-08 10:43:42,890 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=34.7 pTM=0.272 ipTM=0.228 tol=6.44
2024-12-08 10:45:03,355 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=34.7 pTM=0.272 ipTM=0.232 tol=6.14
2024-12-08 10:46:23,808 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=34.5 pTM=0.29 ipTM=0.386 tol=6.11
2024-12-08 10:47:44,280 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=34.5 pTM=0.274 ipTM=0.247 tol=6.46
2024-12-08 10:49:04,768 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=34.5 pTM=0.272 ipTM=0.229 tol=6.55
2024-12-08 10:50:25,251 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=34.9 pTM=0.289 ipTM=0.386 tol=7.34
2024-12-08 10:51:45,742 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=35 pTM=0.274 ipTM=0.242 tol=5.3
2024-12-08 10:53:06,203 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=34.8 pTM=0.271 ipTM=0.216 tol=8.8
2024-12-08 10:54:26,671 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=35 pTM=0.281 ipTM=0.308 tol=7.71
2024-12-08 10:55:47,144 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=35.1 pTM=0.275 ipTM=0.25 tol=7.96
2024-12-08 10:57:07,617 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=34.9 pTM=0.271 ipTM=0.216 tol=9.02
2024-12-08 10:58:28,021 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=34.9 pTM=0.281 ipTM=0.306 tol=7.12
2024-12-08 10:59:48,456 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=35 pTM=0.276 ipTM=0.252 tol=7.91
2024-12-08 11:01:08,901 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=35.2 pTM=0.272 ipTM=0.213 tol=8.88
2024-12-08 11:02:29,349 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=34.8 pTM=0.275 ipTM=0.25 tol=9.48
2024-12-08 11:03:49,783 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=35.1 pTM=0.28 ipTM=0.29 tol=8.48
2024-12-08 11:05:10,210 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=35.1 pTM=0.277 ipTM=0.259 tol=7.35
2024-12-08 11:06:30,665 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=35.5 pTM=0.279 ipTM=0.281 tol=9.38
2024-12-08 11:06:30,666 alphafold2_multimer_v3_model_1_seed_000 took 2622.9s (30 recycles)
2024-12-08 11:07:52,630 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=36 pTM=0.285 ipTM=0.33
2024-12-08 11:09:13,056 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=37.5 pTM=0.292 ipTM=0.351 tol=18.7
2024-12-08 11:10:33,464 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=37.8 pTM=0.298 ipTM=0.366 tol=10.7
2024-12-08 11:11:53,927 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=37.9 pTM=0.297 ipTM=0.364 tol=9.88
2024-12-08 11:13:14,397 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=37.8 pTM=0.296 ipTM=0.356 tol=7.54
2024-12-08 11:14:34,853 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=37.8 pTM=0.296 ipTM=0.365 tol=6.66
2024-12-08 11:15:55,346 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=37.8 pTM=0.297 ipTM=0.376 tol=6.85
2024-12-08 11:17:15,834 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=37.9 pTM=0.297 ipTM=0.377 tol=6.65
2024-12-08 11:18:36,343 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=38.1 pTM=0.299 ipTM=0.381 tol=6.11
2024-12-08 11:19:56,837 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=38.2 pTM=0.299 ipTM=0.382 tol=5.86
2024-12-08 11:21:17,338 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=38.1 pTM=0.299 ipTM=0.389 tol=8.73
2024-12-08 11:22:37,836 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=38.1 pTM=0.298 ipTM=0.385 tol=5.16
2024-12-08 11:23:58,344 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=38 pTM=0.298 ipTM=0.387 tol=4.66
2024-12-08 11:25:18,839 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=38.1 pTM=0.299 ipTM=0.394 tol=3.39
2024-12-08 11:26:39,323 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=38 pTM=0.299 ipTM=0.395 tol=4.84
2024-12-08 11:27:59,828 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=38.3 pTM=0.299 ipTM=0.392 tol=5.11
2024-12-08 11:29:20,289 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=38.1 pTM=0.299 ipTM=0.392 tol=7.89
2024-12-08 11:30:40,770 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=38.2 pTM=0.3 ipTM=0.397 tol=3.61
2024-12-08 11:32:01,247 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=38.2 pTM=0.299 ipTM=0.393 tol=4.26
2024-12-08 11:33:21,728 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=38.2 pTM=0.299 ipTM=0.395 tol=3.62
2024-12-08 11:34:42,206 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=38.2 pTM=0.299 ipTM=0.396 tol=4.95
2024-12-08 11:36:02,716 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=38.4 pTM=0.3 ipTM=0.395 tol=4.73
2024-12-08 11:37:23,216 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=38.2 pTM=0.299 ipTM=0.391 tol=3.24
2024-12-08 11:38:43,707 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=38.2 pTM=0.299 ipTM=0.392 tol=5.27
2024-12-08 11:40:04,194 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=38.2 pTM=0.299 ipTM=0.393 tol=4.96
2024-12-08 11:41:24,690 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=38.2 pTM=0.299 ipTM=0.39 tol=3.86
2024-12-08 11:42:45,195 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=38.2 pTM=0.299 ipTM=0.396 tol=4.74
2024-12-08 11:44:05,661 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=38 pTM=0.299 ipTM=0.396 tol=5.27
2024-12-08 11:45:26,140 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=38.2 pTM=0.299 ipTM=0.397 tol=3.65
2024-12-08 11:46:46,624 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=38.2 pTM=0.299 ipTM=0.395 tol=3.36
2024-12-08 11:48:07,136 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=38.2 pTM=0.299 ipTM=0.391 tol=3.25
2024-12-08 11:48:07,137 alphafold2_multimer_v3_model_2_seed_000 took 2494.9s (30 recycles)
2024-12-08 11:49:29,662 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=35.8 pTM=0.293 ipTM=0.402
2024-12-08 11:50:50,785 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=36.2 pTM=0.291 ipTM=0.4 tol=29
2024-12-08 11:52:11,880 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=36.2 pTM=0.283 ipTM=0.291 tol=20.8
2024-12-08 11:53:33,047 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=36.7 pTM=0.295 ipTM=0.389 tol=16.6
2024-12-08 11:54:54,208 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=36.9 pTM=0.279 ipTM=0.219 tol=10.7
2024-12-08 11:56:15,373 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=37 pTM=0.282 ipTM=0.257 tol=8.46
2024-12-08 11:57:36,529 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=37.1 pTM=0.291 ipTM=0.321 tol=6.27
2024-12-08 11:58:57,666 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=37.2 pTM=0.286 ipTM=0.278 tol=6.97
2024-12-08 12:00:18,833 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=37.4 pTM=0.293 ipTM=0.34 tol=12.1
2024-12-08 12:01:39,967 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=37.1 pTM=0.288 ipTM=0.289 tol=15.1
2024-12-08 12:03:01,166 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=37 pTM=0.291 ipTM=0.345 tol=14.6
2024-12-08 12:04:22,326 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=36.8 pTM=0.28 ipTM=0.229 tol=9.94
2024-12-08 12:05:43,495 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=37 pTM=0.293 ipTM=0.348 tol=12.3
2024-12-08 12:07:04,667 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=36.8 pTM=0.28 ipTM=0.234 tol=12
2024-12-08 12:08:25,826 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=37.1 pTM=0.281 ipTM=0.233 tol=5.46
2024-12-08 12:09:46,938 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=37.1 pTM=0.296 ipTM=0.356 tol=8.64
2024-12-08 12:11:08,062 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=36.7 pTM=0.279 ipTM=0.236 tol=8.33
2024-12-08 12:12:29,210 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=37 pTM=0.292 ipTM=0.342 tol=6.38
2024-12-08 12:13:50,374 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=37 pTM=0.278 ipTM=0.228 tol=18.3
2024-12-08 12:15:11,513 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=36.8 pTM=0.284 ipTM=0.262 tol=11.2
2024-12-08 12:16:32,635 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=36 pTM=0.288 ipTM=0.292 tol=20.1
2024-12-08 12:17:53,763 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=36.3 pTM=0.277 ipTM=0.226 tol=18.7
2024-12-08 12:19:14,925 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=36.8 pTM=0.274 ipTM=0.223 tol=19.3
2024-12-08 12:20:36,066 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=36.9 pTM=0.285 ipTM=0.291 tol=11.1
2024-12-08 12:21:57,217 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=36.8 pTM=0.277 ipTM=0.23 tol=7.93
2024-12-08 12:23:18,371 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=37.1 pTM=0.281 ipTM=0.242 tol=19.6
2024-12-08 12:24:39,499 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=37.2 pTM=0.292 ipTM=0.34 tol=17
2024-12-08 12:26:00,664 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=36.9 pTM=0.281 ipTM=0.239 tol=10.4
2024-12-08 12:27:21,842 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=37.2 pTM=0.283 ipTM=0.261 tol=9.91
2024-12-08 12:28:42,980 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=37.2 pTM=0.289 ipTM=0.297 tol=13.3
2024-12-08 12:30:04,163 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=37.2 pTM=0.279 ipTM=0.228 tol=13.4
2024-12-08 12:30:04,165 alphafold2_multimer_v3_model_3_seed_000 took 2515.5s (30 recycles)
2024-12-08 12:31:26,770 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=34.2 pTM=0.274 ipTM=0.229
2024-12-08 12:32:47,947 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=35.2 pTM=0.29 ipTM=0.235 tol=24.8
2024-12-08 12:34:09,094 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=35.7 pTM=0.294 ipTM=0.274 tol=14.5
2024-12-08 12:35:30,276 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=35.2 pTM=0.291 ipTM=0.292 tol=16.9
2024-12-08 12:36:51,429 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=35.2 pTM=0.292 ipTM=0.278 tol=12.1
2024-12-08 12:38:12,568 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=34.8 pTM=0.29 ipTM=0.269 tol=12.1
2024-12-08 12:39:33,712 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=34.7 pTM=0.29 ipTM=0.268 tol=14.9
2024-12-08 12:40:54,801 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=34.8 pTM=0.293 ipTM=0.258 tol=16.5
2024-12-08 12:42:15,865 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=35 pTM=0.293 ipTM=0.275 tol=14.4
2024-12-08 12:43:36,906 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=35.2 pTM=0.294 ipTM=0.274 tol=12.2
2024-12-08 12:44:57,970 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=35.2 pTM=0.293 ipTM=0.295 tol=8.38
2024-12-08 12:46:19,041 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=35.2 pTM=0.295 ipTM=0.283 tol=8.28
2024-12-08 12:47:40,126 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=34.9 pTM=0.29 ipTM=0.26 tol=8.65
2024-12-08 12:49:01,254 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=35.1 pTM=0.292 ipTM=0.247 tol=8.78
2024-12-08 12:50:22,389 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=35.1 pTM=0.289 ipTM=0.268 tol=9.02
2024-12-08 12:51:43,482 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=35.3 pTM=0.296 ipTM=0.257 tol=7.37
2024-12-08 12:53:04,537 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=35.1 pTM=0.291 ipTM=0.305 tol=12.7
2024-12-08 12:54:25,589 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=35.2 pTM=0.296 ipTM=0.314 tol=11.7
2024-12-08 12:55:46,671 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=35.3 pTM=0.294 ipTM=0.288 tol=8.29
2024-12-08 12:57:07,766 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=35.2 pTM=0.293 ipTM=0.284 tol=15.1
2024-12-08 12:58:28,897 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=35 pTM=0.291 ipTM=0.293 tol=14.4
2024-12-08 12:59:49,969 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=35.2 pTM=0.292 ipTM=0.282 tol=10.6
2024-12-08 13:01:11,018 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=35.5 pTM=0.297 ipTM=0.299 tol=9.23
2024-12-08 13:02:32,149 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=35.4 pTM=0.296 ipTM=0.275 tol=9.28
2024-12-08 13:03:53,233 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=35.1 pTM=0.294 ipTM=0.25 tol=7.89
2024-12-08 13:05:14,271 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=35.5 pTM=0.297 ipTM=0.307 tol=7.98
2024-12-08 13:06:35,289 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=35.1 pTM=0.294 ipTM=0.28 tol=12.3
2024-12-08 13:07:56,317 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=35.1 pTM=0.291 ipTM=0.257 tol=11.6
2024-12-08 13:09:17,347 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=35.1 pTM=0.292 ipTM=0.273 tol=7.85
2024-12-08 13:10:38,395 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=35.2 pTM=0.293 ipTM=0.25 tol=8.08
2024-12-08 13:11:59,460 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=35.2 pTM=0.291 ipTM=0.261 tol=5.96
2024-12-08 13:11:59,462 alphafold2_multimer_v3_model_4_seed_000 took 2513.8s (30 recycles)
2024-12-08 13:13:22,095 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=34.4 pTM=0.264 ipTM=0.204
2024-12-08 13:14:43,220 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=35.6 pTM=0.271 ipTM=0.213 tol=20.1
2024-12-08 13:16:04,395 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=35.4 pTM=0.276 ipTM=0.21 tol=18
2024-12-08 13:17:25,598 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=36 pTM=0.276 ipTM=0.241 tol=17.9
2024-12-08 13:18:46,789 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=36.3 pTM=0.279 ipTM=0.247 tol=14.7
2024-12-08 13:20:07,947 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=37 pTM=0.289 ipTM=0.299 tol=15.1
2024-12-08 13:21:29,176 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=36.6 pTM=0.289 ipTM=0.297 tol=13.9
2024-12-08 13:22:50,375 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=37.1 pTM=0.289 ipTM=0.292 tol=15.1
2024-12-08 13:24:11,554 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=36.8 pTM=0.287 ipTM=0.249 tol=17.3
2024-12-08 13:25:32,742 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=37.1 pTM=0.286 ipTM=0.283 tol=16.2
2024-12-08 13:26:53,880 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=36.6 pTM=0.282 ipTM=0.257 tol=14.3
2024-12-08 13:28:15,033 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=36.8 pTM=0.284 ipTM=0.296 tol=9.7
2024-12-08 13:29:36,172 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=36.5 pTM=0.282 ipTM=0.255 tol=15.8
2024-12-08 13:30:57,375 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=36.7 pTM=0.286 ipTM=0.281 tol=7.9
2024-12-08 13:32:18,554 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=36.6 pTM=0.286 ipTM=0.248 tol=7.34
2024-12-08 13:33:39,689 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=37.2 pTM=0.293 ipTM=0.305 tol=10
2024-12-08 13:35:00,784 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=36.7 pTM=0.291 ipTM=0.283 tol=16
2024-12-08 13:36:21,915 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=37.2 pTM=0.296 ipTM=0.323 tol=10.1
2024-12-08 13:37:43,037 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=37.1 pTM=0.29 ipTM=0.28 tol=10.2
2024-12-08 13:39:04,112 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=37.3 pTM=0.295 ipTM=0.313 tol=6.6
2024-12-08 13:40:25,189 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=37.2 pTM=0.292 ipTM=0.291 tol=13.9
2024-12-08 13:41:46,244 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=37.5 pTM=0.296 ipTM=0.311 tol=9.52
2024-12-08 13:43:07,293 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=37.4 pTM=0.295 ipTM=0.298 tol=9.45
2024-12-08 13:44:28,410 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=37.5 pTM=0.295 ipTM=0.296 tol=9.13
2024-12-08 13:45:49,477 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=37.2 pTM=0.292 ipTM=0.27 tol=12.9
2024-12-08 13:47:10,539 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=37.8 pTM=0.295 ipTM=0.307 tol=6.84
2024-12-08 13:48:31,548 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=37.4 pTM=0.294 ipTM=0.282 tol=12.9
2024-12-08 13:49:52,597 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=37.5 pTM=0.294 ipTM=0.3 tol=7.38
2024-12-08 13:51:13,629 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=37.4 pTM=0.293 ipTM=0.276 tol=7.54
2024-12-08 13:52:34,654 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=37.2 pTM=0.295 ipTM=0.297 tol=13
2024-12-08 13:53:55,696 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=37.2 pTM=0.294 ipTM=0.289 tol=10.8
2024-12-08 13:53:55,697 alphafold2_multimer_v3_model_5_seed_000 took 2514.7s (30 recycles)
2024-12-08 13:53:57,228 reranking models by 'multimer' metric
2024-12-08 13:54:01,337 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 13:56:29,736 Relaxation took 152.5s
2024-12-08 13:56:29,736 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=38.2 pTM=0.299 ipTM=0.391
2024-12-08 13:59:39,608 Relaxation took 189.9s
2024-12-08 13:59:39,608 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=37.2 pTM=0.294 ipTM=0.289
2024-12-08 14:02:56,805 Relaxation took 197.2s
2024-12-08 14:02:56,805 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=35.5 pTM=0.279 ipTM=0.281
2024-12-08 14:06:26,405 Relaxation took 209.6s
2024-12-08 14:06:26,405 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=35.2 pTM=0.291 ipTM=0.261
2024-12-08 14:10:25,015 Relaxation took 238.6s
2024-12-08 14:10:25,015 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=37.2 pTM=0.279 ipTM=0.228
2024-12-08 14:10:28,641 Done