2024-12-08 11:23:37,249 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 11:23:37,562 Running on GPU
2024-12-08 11:23:40,285 Found 6 citations for tools or databases
2024-12-08 11:23:40,285 Query 1/1: SIAH1_PRR20A (length 503)
2024-12-08 11:23:40,581 Sleeping for 6s. Reason: PENDING
2024-12-08 11:23:46,838 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:23:53,097 Sleeping for 5s. Reason: RUNNING
2024-12-08 11:23:58,357 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:24:04,630 Sleeping for 8s. Reason: RUNNING
2024-12-08 11:24:12,889 Sleeping for 9s. Reason: RUNNING
2024-12-08 11:24:22,148 Sleeping for 9s. Reason: RUNNING
2024-12-08 11:24:32,141 Sleeping for 7s. Reason: PENDING
2024-12-08 11:24:39,403 Sleeping for 8s. Reason: RUNNING
2024-12-08 11:24:47,664 Sleeping for 10s. Reason: RUNNING
2024-12-08 11:24:57,929 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:25:04,182 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:25:10,442 Sleeping for 8s. Reason: RUNNING
2024-12-08 11:25:20,033 Setting max_seq=508, max_extra_seq=1629
2024-12-08 11:28:11,546 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58.8 pTM=0.511 ipTM=0.696
2024-12-08 11:28:16,862 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.6 pTM=0.507 ipTM=0.708 tol=15.7
2024-12-08 11:28:22,181 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.3 pTM=0.507 ipTM=0.71 tol=6.29
2024-12-08 11:28:27,506 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=60.7 pTM=0.507 ipTM=0.718 tol=2.85
2024-12-08 11:28:32,828 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.9 pTM=0.509 ipTM=0.719 tol=3.65
2024-12-08 11:28:38,146 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61 pTM=0.51 ipTM=0.721 tol=2.99
2024-12-08 11:28:43,469 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=61.1 pTM=0.509 ipTM=0.718 tol=2.18
2024-12-08 11:28:48,793 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61.1 pTM=0.506 ipTM=0.716 tol=2.47
2024-12-08 11:28:54,117 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=61 pTM=0.509 ipTM=0.718 tol=1.77
2024-12-08 11:28:59,446 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=61.2 pTM=0.513 ipTM=0.726 tol=1.09
2024-12-08 11:29:04,761 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=61 pTM=0.509 ipTM=0.717 tol=1.57
2024-12-08 11:29:10,087 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=61.1 pTM=0.512 ipTM=0.722 tol=1.53
2024-12-08 11:29:15,410 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=61.1 pTM=0.513 ipTM=0.724 tol=1.33
2024-12-08 11:29:20,733 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.2 pTM=0.512 ipTM=0.721 tol=0.9
2024-12-08 11:29:26,060 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61.2 pTM=0.513 ipTM=0.725 tol=1.18
2024-12-08 11:29:31,388 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=61.2 pTM=0.516 ipTM=0.729 tol=2.26
2024-12-08 11:29:36,714 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=61.1 pTM=0.514 ipTM=0.726 tol=1.49
2024-12-08 11:29:42,038 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=61.3 pTM=0.516 ipTM=0.728 tol=1.29
2024-12-08 11:29:47,375 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=61.3 pTM=0.515 ipTM=0.727 tol=1.03
2024-12-08 11:29:52,704 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=61.2 pTM=0.516 ipTM=0.727 tol=1.27
2024-12-08 11:29:58,030 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=60.8 pTM=0.513 ipTM=0.72 tol=3.25
2024-12-08 11:30:03,360 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61.2 pTM=0.514 ipTM=0.725 tol=2.77
2024-12-08 11:30:08,686 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=61.2 pTM=0.516 ipTM=0.728 tol=0.951
2024-12-08 11:30:14,016 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=61.4 pTM=0.514 ipTM=0.724 tol=1.12
2024-12-08 11:30:19,348 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=61.2 pTM=0.512 ipTM=0.723 tol=0.856
2024-12-08 11:30:24,681 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=61.3 pTM=0.514 ipTM=0.725 tol=0.745
2024-12-08 11:30:30,014 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=61.3 pTM=0.516 ipTM=0.729 tol=0.681
2024-12-08 11:30:35,348 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=61.3 pTM=0.513 ipTM=0.723 tol=0.841
2024-12-08 11:30:40,683 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=61.2 pTM=0.515 ipTM=0.728 tol=1.18
2024-12-08 11:30:46,018 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=61.1 pTM=0.516 ipTM=0.728 tol=0.812
2024-12-08 11:30:51,351 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=61.2 pTM=0.515 ipTM=0.726 tol=1.29
2024-12-08 11:30:51,351 alphafold2_multimer_v3_model_1_seed_000 took 326.3s (30 recycles)
2024-12-08 11:30:56,850 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=59 pTM=0.506 ipTM=0.665
2024-12-08 11:31:02,183 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.2 pTM=0.528 ipTM=0.715 tol=9.34
2024-12-08 11:31:07,518 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=60.4 pTM=0.525 ipTM=0.728 tol=5.05
2024-12-08 11:31:12,866 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=60.8 pTM=0.53 ipTM=0.744 tol=6.18
2024-12-08 11:31:18,211 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=61 pTM=0.535 ipTM=0.75 tol=3.02
2024-12-08 11:31:23,559 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=61.2 pTM=0.537 ipTM=0.753 tol=3.3
2024-12-08 11:31:28,901 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=61.2 pTM=0.533 ipTM=0.746 tol=2.35
2024-12-08 11:31:34,247 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=61.2 pTM=0.533 ipTM=0.747 tol=1.83
2024-12-08 11:31:39,596 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=61 pTM=0.535 ipTM=0.749 tol=1.54
2024-12-08 11:31:44,944 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=61.2 pTM=0.535 ipTM=0.752 tol=1.18
2024-12-08 11:31:50,292 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=61.2 pTM=0.535 ipTM=0.751 tol=1.08
2024-12-08 11:31:55,638 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=61 pTM=0.536 ipTM=0.751 tol=4.92
2024-12-08 11:32:00,986 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.9 pTM=0.534 ipTM=0.75 tol=1.66
2024-12-08 11:32:06,334 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=61.1 pTM=0.535 ipTM=0.751 tol=0.693
2024-12-08 11:32:11,687 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=61.1 pTM=0.535 ipTM=0.751 tol=0.991
2024-12-08 11:32:17,032 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=61 pTM=0.534 ipTM=0.749 tol=1.44
2024-12-08 11:32:22,373 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.9 pTM=0.534 ipTM=0.748 tol=1.38
2024-12-08 11:32:27,717 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=61 pTM=0.534 ipTM=0.75 tol=1.76
2024-12-08 11:32:33,063 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=61 pTM=0.534 ipTM=0.749 tol=1.49
2024-12-08 11:32:38,408 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=61 pTM=0.534 ipTM=0.749 tol=1.72
2024-12-08 11:32:43,753 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61.1 pTM=0.534 ipTM=0.747 tol=0.967
2024-12-08 11:32:49,102 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=61.1 pTM=0.534 ipTM=0.75 tol=2.37
2024-12-08 11:32:54,461 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=61.2 pTM=0.535 ipTM=0.751 tol=1.76
2024-12-08 11:32:59,806 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=61.2 pTM=0.534 ipTM=0.749 tol=1.62
2024-12-08 11:33:05,151 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=61 pTM=0.532 ipTM=0.748 tol=1.06
2024-12-08 11:33:10,501 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=61 pTM=0.534 ipTM=0.75 tol=1.39
2024-12-08 11:33:15,848 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.9 pTM=0.533 ipTM=0.748 tol=2.24
2024-12-08 11:33:21,196 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=61 pTM=0.532 ipTM=0.747 tol=2.11
2024-12-08 11:33:26,544 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.9 pTM=0.533 ipTM=0.75 tol=1.65
2024-12-08 11:33:31,889 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.8 pTM=0.532 ipTM=0.748 tol=1.84
2024-12-08 11:33:37,237 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.9 pTM=0.534 ipTM=0.748 tol=2.38
2024-12-08 11:33:37,238 alphafold2_multimer_v3_model_2_seed_000 took 165.7s (30 recycles)
2024-12-08 11:33:42,748 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=58 pTM=0.488 ipTM=0.654
2024-12-08 11:33:48,101 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=60 pTM=0.514 ipTM=0.682 tol=10.6
2024-12-08 11:33:53,453 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.6 pTM=0.5 ipTM=0.687 tol=14.8
2024-12-08 11:33:58,808 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=59.8 pTM=0.508 ipTM=0.7 tol=5.52
2024-12-08 11:34:04,165 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=60.6 pTM=0.517 ipTM=0.713 tol=2.8
2024-12-08 11:34:09,525 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.8 pTM=0.521 ipTM=0.72 tol=0.867
2024-12-08 11:34:14,878 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.7 pTM=0.521 ipTM=0.719 tol=2.68
2024-12-08 11:34:20,236 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.8 pTM=0.52 ipTM=0.716 tol=1.22
2024-12-08 11:34:25,593 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.7 pTM=0.52 ipTM=0.715 tol=0.774
2024-12-08 11:34:30,951 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=60.9 pTM=0.523 ipTM=0.722 tol=1.31
2024-12-08 11:34:36,308 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.4 pTM=0.523 ipTM=0.716 tol=0.925
2024-12-08 11:34:41,669 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60.8 pTM=0.525 ipTM=0.722 tol=0.772
2024-12-08 11:34:47,038 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.6 pTM=0.525 ipTM=0.721 tol=1.01
2024-12-08 11:34:52,393 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.6 pTM=0.522 ipTM=0.716 tol=1.14
2024-12-08 11:34:57,751 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=60.5 pTM=0.523 ipTM=0.716 tol=0.877
2024-12-08 11:35:03,120 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=60.9 pTM=0.525 ipTM=0.719 tol=1.09
2024-12-08 11:35:08,475 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.6 pTM=0.524 ipTM=0.718 tol=0.801
2024-12-08 11:35:13,832 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.7 pTM=0.524 ipTM=0.717 tol=0.709
2024-12-08 11:35:19,189 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.6 pTM=0.522 ipTM=0.714 tol=1.05
2024-12-08 11:35:24,545 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=60.3 pTM=0.521 ipTM=0.71 tol=1.29
2024-12-08 11:35:29,896 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=60.3 pTM=0.52 ipTM=0.702 tol=1.03
2024-12-08 11:35:35,254 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=60.5 pTM=0.524 ipTM=0.706 tol=0.755
2024-12-08 11:35:40,612 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=60.5 pTM=0.524 ipTM=0.707 tol=0.879
2024-12-08 11:35:45,969 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=60.7 pTM=0.525 ipTM=0.706 tol=0.724
2024-12-08 11:35:51,325 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=60.6 pTM=0.525 ipTM=0.706 tol=0.77
2024-12-08 11:35:56,687 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=60.8 pTM=0.526 ipTM=0.707 tol=0.927
2024-12-08 11:36:02,047 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=60.6 pTM=0.528 ipTM=0.707 tol=1.21
2024-12-08 11:36:07,401 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.6 pTM=0.528 ipTM=0.708 tol=1.21
2024-12-08 11:36:12,760 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=60.4 pTM=0.527 ipTM=0.708 tol=0.909
2024-12-08 11:36:18,128 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=60.3 pTM=0.528 ipTM=0.708 tol=1.23
2024-12-08 11:36:23,494 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=60.7 pTM=0.528 ipTM=0.709 tol=0.75
2024-12-08 11:36:23,495 alphafold2_multimer_v3_model_3_seed_000 took 166.1s (30 recycles)
2024-12-08 11:36:29,004 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=58.5 pTM=0.518 ipTM=0.694
2024-12-08 11:36:34,352 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=60 pTM=0.521 ipTM=0.713 tol=14.2
2024-12-08 11:36:39,701 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.1 pTM=0.519 ipTM=0.727 tol=6.2
2024-12-08 11:36:45,054 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=60.6 pTM=0.526 ipTM=0.743 tol=3.29
2024-12-08 11:36:50,410 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=60.8 pTM=0.532 ipTM=0.75 tol=2.64
2024-12-08 11:36:55,771 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=61 pTM=0.537 ipTM=0.754 tol=2.31
2024-12-08 11:37:01,126 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=61 pTM=0.532 ipTM=0.751 tol=3.55
2024-12-08 11:37:06,482 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=60.9 pTM=0.534 ipTM=0.749 tol=6.21
2024-12-08 11:37:11,837 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=61 pTM=0.535 ipTM=0.75 tol=3
2024-12-08 11:37:17,193 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=61.2 pTM=0.536 ipTM=0.753 tol=1.79
2024-12-08 11:37:22,548 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=60.7 pTM=0.534 ipTM=0.749 tol=2.06
2024-12-08 11:37:27,903 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=60.8 pTM=0.536 ipTM=0.75 tol=2.02
2024-12-08 11:37:33,267 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=60.7 pTM=0.534 ipTM=0.75 tol=1.68
2024-12-08 11:37:38,620 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=60.8 pTM=0.534 ipTM=0.751 tol=1.09
2024-12-08 11:37:43,971 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=60.7 pTM=0.534 ipTM=0.749 tol=1.12
2024-12-08 11:37:49,323 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=60.9 pTM=0.534 ipTM=0.749 tol=2.85
2024-12-08 11:37:54,678 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=60.6 pTM=0.532 ipTM=0.744 tol=2.71
2024-12-08 11:38:00,031 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=60.5 pTM=0.534 ipTM=0.746 tol=2.6
2024-12-08 11:38:05,382 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=60.9 pTM=0.532 ipTM=0.748 tol=1.51
2024-12-08 11:38:10,738 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=60.7 pTM=0.533 ipTM=0.745 tol=2.4
2024-12-08 11:38:16,086 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=60.7 pTM=0.533 ipTM=0.742 tol=1.41
2024-12-08 11:38:21,437 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=60.6 pTM=0.532 ipTM=0.742 tol=2.42
2024-12-08 11:38:26,787 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=60.9 pTM=0.533 ipTM=0.743 tol=2.28
2024-12-08 11:38:32,135 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=60.7 pTM=0.533 ipTM=0.744 tol=1.95
2024-12-08 11:38:37,485 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=60.8 pTM=0.532 ipTM=0.744 tol=2.06
2024-12-08 11:38:42,834 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=60.7 pTM=0.536 ipTM=0.746 tol=1.81
2024-12-08 11:38:48,185 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=60.8 pTM=0.535 ipTM=0.747 tol=1.55
2024-12-08 11:38:53,541 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=60.7 pTM=0.534 ipTM=0.746 tol=1.83
2024-12-08 11:38:58,882 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=60.7 pTM=0.536 ipTM=0.747 tol=0.941
2024-12-08 11:39:04,226 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.5 pTM=0.533 ipTM=0.745 tol=1.97
2024-12-08 11:39:09,573 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=60.7 pTM=0.534 ipTM=0.745 tol=1.39
2024-12-08 11:39:09,574 alphafold2_multimer_v3_model_4_seed_000 took 165.9s (30 recycles)
2024-12-08 11:39:15,086 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=58.4 pTM=0.538 ipTM=0.705
2024-12-08 11:39:20,444 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59.3 pTM=0.528 ipTM=0.705 tol=13.2
2024-12-08 11:39:25,806 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=59.9 pTM=0.529 ipTM=0.723 tol=7.96
2024-12-08 11:39:31,168 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.3 pTM=0.524 ipTM=0.732 tol=4.48
2024-12-08 11:39:36,535 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=60.3 pTM=0.528 ipTM=0.738 tol=2.5
2024-12-08 11:39:41,900 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=60.6 pTM=0.531 ipTM=0.746 tol=4.24
2024-12-08 11:39:47,264 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=60.2 pTM=0.527 ipTM=0.738 tol=3.43
2024-12-08 11:39:52,632 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.3 pTM=0.527 ipTM=0.742 tol=1.65
2024-12-08 11:39:58,000 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.4 pTM=0.528 ipTM=0.743 tol=3.09
2024-12-08 11:40:03,364 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=60.6 pTM=0.528 ipTM=0.743 tol=1.55
2024-12-08 11:40:08,727 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=60.2 pTM=0.527 ipTM=0.74 tol=1.94
2024-12-08 11:40:14,098 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60.5 pTM=0.528 ipTM=0.745 tol=2.1
2024-12-08 11:40:19,469 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=60.3 pTM=0.528 ipTM=0.744 tol=1.62
2024-12-08 11:40:24,839 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=60.3 pTM=0.526 ipTM=0.743 tol=1.61
2024-12-08 11:40:30,209 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=60.1 pTM=0.525 ipTM=0.739 tol=3.31
2024-12-08 11:40:35,577 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=60.5 pTM=0.527 ipTM=0.744 tol=1.82
2024-12-08 11:40:40,954 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=60.2 pTM=0.526 ipTM=0.743 tol=2.38
2024-12-08 11:40:46,325 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=60.4 pTM=0.528 ipTM=0.745 tol=2.45
2024-12-08 11:40:51,692 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=60.4 pTM=0.527 ipTM=0.742 tol=3.41
2024-12-08 11:40:57,062 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=60.4 pTM=0.527 ipTM=0.741 tol=4.32
2024-12-08 11:41:02,426 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=60.2 pTM=0.526 ipTM=0.737 tol=3.43
2024-12-08 11:41:07,794 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=60.3 pTM=0.528 ipTM=0.742 tol=4.28
2024-12-08 11:41:13,162 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=60.3 pTM=0.528 ipTM=0.74 tol=2.81
2024-12-08 11:41:18,537 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=60.4 pTM=0.529 ipTM=0.743 tol=2.11
2024-12-08 11:41:23,907 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=60.4 pTM=0.529 ipTM=0.743 tol=3.5
2024-12-08 11:41:29,277 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=60.6 pTM=0.531 ipTM=0.746 tol=3.36
2024-12-08 11:41:34,648 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=60.5 pTM=0.532 ipTM=0.743 tol=7.52
2024-12-08 11:41:40,018 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=60.8 pTM=0.53 ipTM=0.744 tol=2.11
2024-12-08 11:41:45,398 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=60.6 pTM=0.531 ipTM=0.744 tol=2.5
2024-12-08 11:41:50,770 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=60.8 pTM=0.532 ipTM=0.745 tol=1.82
2024-12-08 11:41:56,139 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=60.9 pTM=0.532 ipTM=0.746 tol=1.43
2024-12-08 11:41:56,139 alphafold2_multimer_v3_model_5_seed_000 took 166.4s (30 recycles)
2024-12-08 11:41:56,310 reranking models by 'multimer' metric
2024-12-08 11:41:58,834 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 11:42:29,264 Relaxation took 33.0s
2024-12-08 11:42:29,265 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.9 pTM=0.534 ipTM=0.748
2024-12-08 11:42:52,881 Relaxation took 23.6s
2024-12-08 11:42:52,881 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=60.9 pTM=0.532 ipTM=0.746
2024-12-08 11:43:15,763 Relaxation took 22.9s
2024-12-08 11:43:15,763 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=60.7 pTM=0.534 ipTM=0.745
2024-12-08 11:43:38,518 Relaxation took 22.8s
2024-12-08 11:43:38,518 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=61.2 pTM=0.515 ipTM=0.726
2024-12-08 11:44:02,693 Relaxation took 24.2s
2024-12-08 11:44:02,693 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=60.7 pTM=0.528 ipTM=0.709
2024-12-08 11:44:03,672 Done