2024-12-08 11:44:36,629 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 11:44:36,943 Running on GPU
2024-12-08 11:44:40,309 Found 6 citations for tools or databases
2024-12-08 11:44:40,309 Query 1/1: SKP2_CCNB1 (length 857)
2024-12-08 11:44:40,593 Sleeping for 8s. Reason: PENDING
2024-12-08 11:44:48,852 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:44:55,113 Sleeping for 7s. Reason: RUNNING
2024-12-08 11:45:02,375 Sleeping for 8s. Reason: RUNNING
2024-12-08 11:45:10,632 Sleeping for 5s. Reason: RUNNING
2024-12-08 11:45:15,888 Sleeping for 10s. Reason: RUNNING
2024-12-08 11:45:26,145 Sleeping for 7s. Reason: RUNNING
2024-12-08 11:45:33,404 Sleeping for 9s. Reason: RUNNING
2024-12-08 11:45:42,667 Sleeping for 10s. Reason: RUNNING
2024-12-08 11:45:54,274 Sleeping for 10s. Reason: PENDING
2024-12-08 11:46:04,532 Sleeping for 9s. Reason: RUNNING
2024-12-08 11:46:13,791 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:46:20,044 Sleeping for 8s. Reason: RUNNING
2024-12-08 11:46:28,306 Sleeping for 6s. Reason: RUNNING
2024-12-08 11:46:38,241 Setting max_seq=508, max_extra_seq=2048
2024-12-08 11:49:37,901 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=68.6 pTM=0.436 ipTM=0.355
2024-12-08 11:49:54,124 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.2 pTM=0.432 ipTM=0.24 tol=10.8
2024-12-08 11:50:10,399 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.5 pTM=0.434 ipTM=0.226 tol=5.56
2024-12-08 11:50:26,714 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.6 pTM=0.43 ipTM=0.229 tol=6.55
2024-12-08 11:50:43,045 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.7 pTM=0.431 ipTM=0.226 tol=3.86
2024-12-08 11:50:59,404 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.8 pTM=0.432 ipTM=0.241 tol=4.46
2024-12-08 11:51:15,785 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=69.9 pTM=0.432 ipTM=0.233 tol=3.94
2024-12-08 11:51:32,202 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=70.2 pTM=0.434 ipTM=0.252 tol=4.75
2024-12-08 11:51:48,630 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=70.2 pTM=0.433 ipTM=0.244 tol=4.85
2024-12-08 11:52:05,082 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=70.2 pTM=0.433 ipTM=0.256 tol=3.15
2024-12-08 11:52:21,536 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=69.9 pTM=0.435 ipTM=0.222 tol=6.31
2024-12-08 11:52:38,003 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=70.1 pTM=0.432 ipTM=0.268 tol=4.81
2024-12-08 11:52:54,480 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=70.1 pTM=0.433 ipTM=0.238 tol=4.65
2024-12-08 11:53:10,956 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=70 pTM=0.43 ipTM=0.286 tol=7.27
2024-12-08 11:53:27,424 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=70.2 pTM=0.433 ipTM=0.224 tol=4.7
2024-12-08 11:53:43,901 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=70.2 pTM=0.433 ipTM=0.214 tol=4.23
2024-12-08 11:54:00,387 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=70.2 pTM=0.431 ipTM=0.226 tol=2.7
2024-12-08 11:54:16,859 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=70.2 pTM=0.429 ipTM=0.295 tol=1.81
2024-12-08 11:54:33,335 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=70.1 pTM=0.43 ipTM=0.231 tol=5.98
2024-12-08 11:54:49,808 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=69.9 pTM=0.431 ipTM=0.201 tol=4.45
2024-12-08 11:55:06,285 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=70 pTM=0.428 ipTM=0.262 tol=3.41
2024-12-08 11:55:22,759 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=70 pTM=0.43 ipTM=0.225 tol=2.71
2024-12-08 11:55:39,227 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=69.9 pTM=0.429 ipTM=0.248 tol=2.44
2024-12-08 11:55:55,718 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=69.9 pTM=0.431 ipTM=0.22 tol=2.61
2024-12-08 11:56:12,211 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=69.9 pTM=0.433 ipTM=0.222 tol=1.57
2024-12-08 11:56:28,712 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=69.9 pTM=0.432 ipTM=0.227 tol=1.74
2024-12-08 11:56:45,211 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=70 pTM=0.433 ipTM=0.216 tol=1.3
2024-12-08 11:57:01,684 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=69.7 pTM=0.429 ipTM=0.22 tol=2.77
2024-12-08 11:57:18,171 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=69.9 pTM=0.431 ipTM=0.22 tol=2.23
2024-12-08 11:57:34,654 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=69.9 pTM=0.431 ipTM=0.243 tol=3
2024-12-08 11:57:51,125 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=69.8 pTM=0.43 ipTM=0.22 tol=4.61
2024-12-08 11:57:51,126 alphafold2_multimer_v3_model_1_seed_000 took 667.9s (30 recycles)
2024-12-08 11:58:08,098 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=69 pTM=0.472 ipTM=0.24
2024-12-08 11:58:24,690 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.4 pTM=0.443 ipTM=0.178 tol=12.1
2024-12-08 11:58:41,276 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=70.4 pTM=0.442 ipTM=0.153 tol=3.46
2024-12-08 11:58:57,858 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=70.7 pTM=0.437 ipTM=0.222 tol=5.97
2024-12-08 11:59:14,440 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=70.5 pTM=0.435 ipTM=0.182 tol=4.54
2024-12-08 11:59:31,038 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=70.4 pTM=0.435 ipTM=0.158 tol=2.95
2024-12-08 11:59:47,630 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=70.4 pTM=0.434 ipTM=0.153 tol=3.89
2024-12-08 12:00:04,229 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=70.7 pTM=0.435 ipTM=0.19 tol=3.63
2024-12-08 12:00:20,813 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=70.4 pTM=0.433 ipTM=0.172 tol=2.71
2024-12-08 12:00:37,409 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=69.9 pTM=0.435 ipTM=0.183 tol=15.4
2024-12-08 12:00:53,983 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.4 pTM=0.435 ipTM=0.169 tol=9.46
2024-12-08 12:01:10,586 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=70.6 pTM=0.436 ipTM=0.159 tol=9.07
2024-12-08 12:01:27,171 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=70.7 pTM=0.435 ipTM=0.161 tol=7.05
2024-12-08 12:01:43,769 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=70.6 pTM=0.436 ipTM=0.171 tol=3.57
2024-12-08 12:02:00,351 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=70.9 pTM=0.438 ipTM=0.166 tol=3.47
2024-12-08 12:02:16,932 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=70.9 pTM=0.44 ipTM=0.161 tol=3.96
2024-12-08 12:02:33,515 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=71 pTM=0.441 ipTM=0.2 tol=4.56
2024-12-08 12:02:50,096 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=70.9 pTM=0.438 ipTM=0.176 tol=3.98
2024-12-08 12:03:06,704 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=70.6 pTM=0.433 ipTM=0.18 tol=5.89
2024-12-08 12:03:23,284 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=70.7 pTM=0.441 ipTM=0.158 tol=5.8
2024-12-08 12:03:39,875 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=70.7 pTM=0.436 ipTM=0.164 tol=3.31
2024-12-08 12:03:56,462 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=70.7 pTM=0.436 ipTM=0.151 tol=2.88
2024-12-08 12:04:13,056 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=70.6 pTM=0.434 ipTM=0.182 tol=2.12
2024-12-08 12:04:29,626 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=70.7 pTM=0.441 ipTM=0.162 tol=4.25
2024-12-08 12:04:46,225 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=70.8 pTM=0.442 ipTM=0.183 tol=2.45
2024-12-08 12:05:02,813 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=70.8 pTM=0.44 ipTM=0.163 tol=3.58
2024-12-08 12:05:19,385 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=70.9 pTM=0.443 ipTM=0.174 tol=4.31
2024-12-08 12:05:35,968 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=70.7 pTM=0.439 ipTM=0.161 tol=3.13
2024-12-08 12:05:52,545 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=70.7 pTM=0.436 ipTM=0.163 tol=2.3
2024-12-08 12:06:09,122 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=70.6 pTM=0.438 ipTM=0.168 tol=2.97
2024-12-08 12:06:25,703 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=70.7 pTM=0.438 ipTM=0.179 tol=1.65
2024-12-08 12:06:25,704 alphafold2_multimer_v3_model_2_seed_000 took 514.1s (30 recycles)
2024-12-08 12:06:42,748 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.6 pTM=0.44 ipTM=0.243
2024-12-08 12:06:59,323 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=69.7 pTM=0.446 ipTM=0.146 tol=9.05
2024-12-08 12:07:15,907 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.9 pTM=0.444 ipTM=0.142 tol=4.04
2024-12-08 12:07:32,501 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69.8 pTM=0.439 ipTM=0.14 tol=5.71
2024-12-08 12:07:49,087 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=69.7 pTM=0.44 ipTM=0.206 tol=3.29
2024-12-08 12:08:05,653 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=69.6 pTM=0.449 ipTM=0.181 tol=6.4
2024-12-08 12:08:22,241 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=69.8 pTM=0.447 ipTM=0.194 tol=3.66
2024-12-08 12:08:38,819 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=69.9 pTM=0.444 ipTM=0.201 tol=4.32
2024-12-08 12:08:55,428 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=69.9 pTM=0.443 ipTM=0.193 tol=2.72
2024-12-08 12:09:12,016 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=69.8 pTM=0.443 ipTM=0.163 tol=3.41
2024-12-08 12:09:28,629 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=69.6 pTM=0.45 ipTM=0.204 tol=6.8
2024-12-08 12:09:45,224 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=69.6 pTM=0.449 ipTM=0.165 tol=3.96
2024-12-08 12:10:01,857 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=69.6 pTM=0.438 ipTM=0.22 tol=9.3
2024-12-08 12:10:18,441 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=69.5 pTM=0.448 ipTM=0.189 tol=9.24
2024-12-08 12:10:35,060 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=69.7 pTM=0.446 ipTM=0.196 tol=5.59
2024-12-08 12:10:51,648 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=69.7 pTM=0.442 ipTM=0.208 tol=5.01
2024-12-08 12:11:08,271 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=69.7 pTM=0.448 ipTM=0.192 tol=6.46
2024-12-08 12:11:24,858 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=69.8 pTM=0.441 ipTM=0.234 tol=5.74
2024-12-08 12:11:41,484 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=69.5 pTM=0.443 ipTM=0.187 tol=5.02
2024-12-08 12:11:58,091 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=69.6 pTM=0.44 ipTM=0.18 tol=4.72
2024-12-08 12:12:14,712 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=69.6 pTM=0.449 ipTM=0.196 tol=6.03
2024-12-08 12:12:31,298 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=69.7 pTM=0.445 ipTM=0.208 tol=4.36
2024-12-08 12:12:47,923 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=69.5 pTM=0.442 ipTM=0.176 tol=6.24
2024-12-08 12:13:04,548 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=69.7 pTM=0.44 ipTM=0.22 tol=4.65
2024-12-08 12:13:21,195 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=69.6 pTM=0.446 ipTM=0.174 tol=5.21
2024-12-08 12:13:37,817 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=69.7 pTM=0.442 ipTM=0.243 tol=4.45
2024-12-08 12:13:54,447 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=69.7 pTM=0.446 ipTM=0.158 tol=4.32
2024-12-08 12:14:11,069 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=69.6 pTM=0.439 ipTM=0.196 tol=4.95
2024-12-08 12:14:27,693 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=69.5 pTM=0.442 ipTM=0.173 tol=4.61
2024-12-08 12:14:44,314 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=69.6 pTM=0.441 ipTM=0.204 tol=3.86
2024-12-08 12:15:00,952 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=69.4 pTM=0.443 ipTM=0.181 tol=3.88
2024-12-08 12:15:00,953 alphafold2_multimer_v3_model_3_seed_000 took 514.8s (30 recycles)
2024-12-08 12:15:17,989 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.9 pTM=0.436 ipTM=0.145
2024-12-08 12:15:34,535 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=69.1 pTM=0.446 ipTM=0.258 tol=15.4
2024-12-08 12:15:51,086 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=69.1 pTM=0.44 ipTM=0.166 tol=7.65
2024-12-08 12:16:07,639 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=69.4 pTM=0.443 ipTM=0.161 tol=6.84
2024-12-08 12:16:24,225 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69.5 pTM=0.44 ipTM=0.167 tol=3.78
2024-12-08 12:16:40,808 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=69.5 pTM=0.44 ipTM=0.18 tol=4.71
2024-12-08 12:16:57,368 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=69.4 pTM=0.44 ipTM=0.142 tol=5.1
2024-12-08 12:17:13,931 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70 pTM=0.441 ipTM=0.176 tol=2.96
2024-12-08 12:17:30,483 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.8 pTM=0.44 ipTM=0.148 tol=3.16
2024-12-08 12:17:47,048 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=69.8 pTM=0.439 ipTM=0.137 tol=7.56
2024-12-08 12:18:03,586 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=69.6 pTM=0.441 ipTM=0.153 tol=2.58
2024-12-08 12:18:20,138 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69.8 pTM=0.441 ipTM=0.148 tol=2.27
2024-12-08 12:18:36,703 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=69.7 pTM=0.441 ipTM=0.138 tol=3.68
2024-12-08 12:18:53,275 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=69.7 pTM=0.439 ipTM=0.133 tol=3.51
2024-12-08 12:19:09,825 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=69.7 pTM=0.441 ipTM=0.137 tol=4.35
2024-12-08 12:19:26,408 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=70 pTM=0.439 ipTM=0.136 tol=3.33
2024-12-08 12:19:42,983 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=69.9 pTM=0.438 ipTM=0.134 tol=2.45
2024-12-08 12:19:59,557 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=69.9 pTM=0.44 ipTM=0.134 tol=3.05
2024-12-08 12:20:16,121 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=69.8 pTM=0.44 ipTM=0.135 tol=2.46
2024-12-08 12:20:32,708 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=69.8 pTM=0.44 ipTM=0.139 tol=2.2
2024-12-08 12:20:49,296 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=69.8 pTM=0.44 ipTM=0.135 tol=2.61
2024-12-08 12:21:05,868 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=69.8 pTM=0.44 ipTM=0.138 tol=2.86
2024-12-08 12:21:22,449 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=69.9 pTM=0.439 ipTM=0.135 tol=2.66
2024-12-08 12:21:39,024 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=69.8 pTM=0.439 ipTM=0.134 tol=2.99
2024-12-08 12:21:55,610 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=69.9 pTM=0.441 ipTM=0.138 tol=2.55
2024-12-08 12:22:12,190 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=69.8 pTM=0.44 ipTM=0.137 tol=2.42
2024-12-08 12:22:28,773 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=69.9 pTM=0.439 ipTM=0.135 tol=3.15
2024-12-08 12:22:45,343 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=69.8 pTM=0.438 ipTM=0.135 tol=2.27
2024-12-08 12:23:01,900 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=69.8 pTM=0.44 ipTM=0.137 tol=2.51
2024-12-08 12:23:18,470 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=69.7 pTM=0.439 ipTM=0.136 tol=3.64
2024-12-08 12:23:35,035 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=69.8 pTM=0.439 ipTM=0.136 tol=1.54
2024-12-08 12:23:35,036 alphafold2_multimer_v3_model_4_seed_000 took 513.6s (30 recycles)
2024-12-08 12:23:52,016 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.8 pTM=0.437 ipTM=0.235
2024-12-08 12:24:08,584 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.2 pTM=0.436 ipTM=0.137 tol=10.4
2024-12-08 12:24:25,185 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=69.8 pTM=0.45 ipTM=0.214 tol=13.5
2024-12-08 12:24:41,806 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=69.9 pTM=0.457 ipTM=0.151 tol=9.91
2024-12-08 12:24:58,418 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=70.2 pTM=0.452 ipTM=0.188 tol=7.13
2024-12-08 12:25:15,014 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=70.2 pTM=0.458 ipTM=0.18 tol=4.66
2024-12-08 12:25:31,610 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=70.2 pTM=0.457 ipTM=0.206 tol=6.25
2024-12-08 12:25:48,207 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=70.4 pTM=0.461 ipTM=0.163 tol=4.14
2024-12-08 12:26:04,825 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=70.4 pTM=0.457 ipTM=0.15 tol=4.5
2024-12-08 12:26:21,434 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=70.4 pTM=0.456 ipTM=0.149 tol=6.52
2024-12-08 12:26:38,057 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=70.4 pTM=0.46 ipTM=0.156 tol=4.59
2024-12-08 12:26:54,665 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=70.4 pTM=0.46 ipTM=0.156 tol=4.65
2024-12-08 12:27:11,261 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=70.4 pTM=0.458 ipTM=0.154 tol=3.03
2024-12-08 12:27:27,865 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=70.4 pTM=0.461 ipTM=0.235 tol=5.15
2024-12-08 12:27:44,470 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=70.4 pTM=0.462 ipTM=0.162 tol=6.25
2024-12-08 12:28:01,075 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=70.4 pTM=0.461 ipTM=0.155 tol=2.6
2024-12-08 12:28:17,680 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=70.3 pTM=0.463 ipTM=0.158 tol=4.99
2024-12-08 12:28:34,278 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=70.3 pTM=0.458 ipTM=0.15 tol=2.86
2024-12-08 12:28:50,873 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=70.4 pTM=0.456 ipTM=0.169 tol=6.41
2024-12-08 12:29:07,468 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=70.4 pTM=0.463 ipTM=0.16 tol=6.52
2024-12-08 12:29:24,065 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=70.3 pTM=0.461 ipTM=0.154 tol=4.47
2024-12-08 12:29:40,648 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=70.4 pTM=0.46 ipTM=0.192 tol=2.92
2024-12-08 12:29:57,238 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=70.3 pTM=0.46 ipTM=0.163 tol=3.43
2024-12-08 12:30:13,842 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=70.4 pTM=0.463 ipTM=0.156 tol=4.8
2024-12-08 12:30:30,438 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=70.3 pTM=0.462 ipTM=0.155 tol=4.18
2024-12-08 12:30:47,041 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=70.4 pTM=0.461 ipTM=0.152 tol=5.04
2024-12-08 12:31:03,651 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=70.4 pTM=0.46 ipTM=0.155 tol=2.87
2024-12-08 12:31:20,248 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=70.4 pTM=0.459 ipTM=0.243 tol=5.68
2024-12-08 12:31:36,854 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=70.3 pTM=0.458 ipTM=0.154 tol=4.47
2024-12-08 12:31:53,465 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=70.3 pTM=0.457 ipTM=0.147 tol=3.92
2024-12-08 12:32:10,085 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=70.3 pTM=0.458 ipTM=0.15 tol=4.21
2024-12-08 12:32:10,086 alphafold2_multimer_v3_model_5_seed_000 took 514.6s (30 recycles)
2024-12-08 12:32:10,554 reranking models by 'multimer' metric
2024-12-08 12:32:13,636 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 12:33:16,963 Relaxation took 66.4s
2024-12-08 12:33:16,963 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=69.8 pTM=0.43 ipTM=0.22
2024-12-08 12:34:17,476 Relaxation took 60.5s
2024-12-08 12:34:17,477 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=69.4 pTM=0.443 ipTM=0.181
2024-12-08 12:35:08,690 Relaxation took 51.2s
2024-12-08 12:35:08,691 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=70.7 pTM=0.438 ipTM=0.179
2024-12-08 12:36:00,495 Relaxation took 51.8s
2024-12-08 12:36:00,495 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=70.3 pTM=0.458 ipTM=0.15
2024-12-08 12:36:53,253 Relaxation took 52.8s
2024-12-08 12:36:53,253 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=69.8 pTM=0.439 ipTM=0.136
2024-12-08 12:36:54,758 Done