2024-12-08 12:37:31,374 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 12:37:31,699 Running on GPU
2024-12-08 12:37:35,405 Found 6 citations for tools or databases
2024-12-08 12:37:35,405 Query 1/1: SKP2_MCM8 (length 1264)
2024-12-08 12:37:35,716 Sleeping for 7s. Reason: PENDING
2024-12-08 12:37:42,976 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:37:48,232 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:37:53,487 Sleeping for 7s. Reason: RUNNING
2024-12-08 12:38:00,752 Sleeping for 7s. Reason: RUNNING
2024-12-08 12:38:08,007 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:38:13,262 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:38:19,525 Sleeping for 8s. Reason: RUNNING
2024-12-08 12:38:27,800 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:38:33,062 Sleeping for 9s. Reason: RUNNING
2024-12-08 12:38:42,322 Sleeping for 7s. Reason: RUNNING
2024-12-08 12:38:49,580 Sleeping for 8s. Reason: RUNNING
2024-12-08 12:38:57,834 Sleeping for 9s. Reason: RUNNING
2024-12-08 12:39:07,100 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:39:13,351 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:39:19,615 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:39:24,876 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:39:31,127 Sleeping for 10s. Reason: RUNNING
2024-12-08 12:39:41,388 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:39:46,650 Sleeping for 7s. Reason: RUNNING
2024-12-08 12:39:53,905 Sleeping for 9s. Reason: RUNNING
2024-12-08 12:40:03,169 Sleeping for 9s. Reason: RUNNING
2024-12-08 12:40:12,423 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:40:18,687 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:40:25,914 Sleeping for 5s. Reason: PENDING
2024-12-08 12:40:31,182 Sleeping for 8s. Reason: RUNNING
2024-12-08 12:40:39,449 Sleeping for 10s. Reason: RUNNING
2024-12-08 12:40:49,711 Sleeping for 10s. Reason: RUNNING
2024-12-08 12:40:59,982 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:41:06,234 Sleeping for 9s. Reason: RUNNING
2024-12-08 12:41:15,499 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:41:21,753 Sleeping for 7s. Reason: RUNNING
2024-12-08 12:41:29,011 Sleeping for 8s. Reason: RUNNING
2024-12-08 12:41:37,267 Sleeping for 6s. Reason: RUNNING
2024-12-08 12:41:43,517 Sleeping for 5s. Reason: RUNNING
2024-12-08 12:41:48,769 Sleeping for 8s. Reason: RUNNING
2024-12-08 12:41:57,027 Sleeping for 9s. Reason: RUNNING
2024-12-08 12:42:11,186 Setting max_seq=508, max_extra_seq=2048
2024-12-08 12:44:42,017 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=64.1 pTM=0.469 ipTM=0.156
2024-12-08 12:45:19,568 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=64.8 pTM=0.464 ipTM=0.157 tol=4.7
2024-12-08 12:45:57,183 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=66.4 pTM=0.477 ipTM=0.17 tol=4.03
2024-12-08 12:46:34,791 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=67.1 pTM=0.486 ipTM=0.177 tol=2.47
2024-12-08 12:47:12,481 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=66.9 pTM=0.479 ipTM=0.173 tol=2.78
2024-12-08 12:47:50,180 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=67.1 pTM=0.474 ipTM=0.18 tol=2.49
2024-12-08 12:48:27,903 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=66.8 pTM=0.475 ipTM=0.188 tol=2.68
2024-12-08 12:49:05,610 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=67.2 pTM=0.475 ipTM=0.188 tol=2.04
2024-12-08 12:49:43,319 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=67.6 pTM=0.474 ipTM=0.19 tol=1.6
2024-12-08 12:50:21,014 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=67.7 pTM=0.478 ipTM=0.206 tol=2.26
2024-12-08 12:50:58,707 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=67.8 pTM=0.478 ipTM=0.221 tol=1.89
2024-12-08 12:51:36,427 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=67.5 pTM=0.481 ipTM=0.227 tol=2.95
2024-12-08 12:52:14,133 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=67.6 pTM=0.48 ipTM=0.21 tol=2.44
2024-12-08 12:52:51,819 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=68.2 pTM=0.477 ipTM=0.249 tol=2.55
2024-12-08 12:53:29,527 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=68.1 pTM=0.473 ipTM=0.212 tol=1.9
2024-12-08 12:54:07,235 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=67.9 pTM=0.474 ipTM=0.222 tol=1.28
2024-12-08 12:54:44,926 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=67.4 pTM=0.471 ipTM=0.191 tol=1.19
2024-12-08 12:55:22,602 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=67.2 pTM=0.475 ipTM=0.244 tol=2.03
2024-12-08 12:56:00,271 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=67.6 pTM=0.475 ipTM=0.232 tol=1.26
2024-12-08 12:56:37,954 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=67.5 pTM=0.474 ipTM=0.238 tol=1.53
2024-12-08 12:57:15,637 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=67.2 pTM=0.475 ipTM=0.226 tol=1.06
2024-12-08 12:57:53,320 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=67.1 pTM=0.47 ipTM=0.225 tol=1.05
2024-12-08 12:58:31,005 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=67.3 pTM=0.475 ipTM=0.213 tol=1.51
2024-12-08 12:59:08,680 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=67.3 pTM=0.479 ipTM=0.229 tol=1.32
2024-12-08 12:59:46,370 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=67.6 pTM=0.474 ipTM=0.221 tol=2.4
2024-12-08 13:00:24,053 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=67.2 pTM=0.479 ipTM=0.224 tol=2.8
2024-12-08 13:01:01,758 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=67.2 pTM=0.476 ipTM=0.222 tol=1.11
2024-12-08 13:01:39,465 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=67.3 pTM=0.478 ipTM=0.224 tol=2.52
2024-12-08 13:02:17,179 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=67.4 pTM=0.479 ipTM=0.221 tol=1.75
2024-12-08 13:02:54,881 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=66.9 pTM=0.476 ipTM=0.213 tol=1.5
2024-12-08 13:03:32,597 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=67.4 pTM=0.474 ipTM=0.219 tol=1.46
2024-12-08 13:03:32,598 alphafold2_multimer_v3_model_1_seed_000 took 1276.4s (30 recycles)
2024-12-08 13:04:11,344 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=64 pTM=0.478 ipTM=0.156
2024-12-08 13:04:49,182 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=64.1 pTM=0.46 ipTM=0.149 tol=19.6
2024-12-08 13:05:27,036 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=65.6 pTM=0.468 ipTM=0.147 tol=5.9
2024-12-08 13:06:04,956 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=65.4 pTM=0.458 ipTM=0.146 tol=6.34
2024-12-08 13:06:42,866 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=62.9 pTM=0.455 ipTM=0.147 tol=18
2024-12-08 13:07:20,807 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=65.1 pTM=0.447 ipTM=0.146 tol=10.9
2024-12-08 13:07:58,744 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=64.6 pTM=0.446 ipTM=0.149 tol=10.4
2024-12-08 13:08:36,647 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=64.9 pTM=0.449 ipTM=0.15 tol=5.96
2024-12-08 13:09:14,538 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=65.1 pTM=0.445 ipTM=0.152 tol=6.3
2024-12-08 13:09:52,415 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=65.1 pTM=0.442 ipTM=0.158 tol=4.53
2024-12-08 13:10:30,275 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=65.6 pTM=0.438 ipTM=0.166 tol=4.93
2024-12-08 13:11:08,133 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=65.4 pTM=0.444 ipTM=0.156 tol=2.77
2024-12-08 13:11:46,002 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=65.6 pTM=0.448 ipTM=0.159 tol=2.18
2024-12-08 13:12:23,877 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=66.4 pTM=0.456 ipTM=0.158 tol=2.18
2024-12-08 13:13:01,758 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=66.3 pTM=0.453 ipTM=0.16 tol=1.78
2024-12-08 13:13:39,649 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=65.8 pTM=0.45 ipTM=0.161 tol=1.35
2024-12-08 13:14:17,538 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=65.7 pTM=0.451 ipTM=0.16 tol=4.04
2024-12-08 13:14:55,447 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=65.8 pTM=0.451 ipTM=0.158 tol=2.72
2024-12-08 13:15:33,344 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=65.7 pTM=0.452 ipTM=0.159 tol=7.69
2024-12-08 13:16:11,215 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=65.7 pTM=0.45 ipTM=0.163 tol=2.77
2024-12-08 13:16:49,109 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=65.6 pTM=0.449 ipTM=0.163 tol=1.97
2024-12-08 13:17:26,999 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=65.7 pTM=0.444 ipTM=0.164 tol=2.36
2024-12-08 13:18:04,874 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=65.2 pTM=0.442 ipTM=0.158 tol=1.92
2024-12-08 13:18:42,752 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=65.3 pTM=0.443 ipTM=0.164 tol=1.9
2024-12-08 13:19:20,641 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=65.6 pTM=0.441 ipTM=0.16 tol=2.3
2024-12-08 13:19:58,526 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=65.5 pTM=0.444 ipTM=0.163 tol=2.71
2024-12-08 13:20:36,402 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=65.3 pTM=0.446 ipTM=0.159 tol=2.71
2024-12-08 13:21:14,283 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=65.1 pTM=0.442 ipTM=0.156 tol=2.23
2024-12-08 13:21:52,177 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=64.3 pTM=0.437 ipTM=0.151 tol=7.84
2024-12-08 13:22:30,030 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=64.3 pTM=0.437 ipTM=0.155 tol=2.94
2024-12-08 13:23:07,918 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=65.4 pTM=0.444 ipTM=0.152 tol=3.71
2024-12-08 13:23:07,920 alphafold2_multimer_v3_model_2_seed_000 took 1174.4s (30 recycles)
2024-12-08 13:23:46,713 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=67.4 pTM=0.495 ipTM=0.167
2024-12-08 13:24:24,633 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=67.6 pTM=0.48 ipTM=0.146 tol=11.7
2024-12-08 13:25:02,558 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=67.3 pTM=0.477 ipTM=0.144 tol=8.09
2024-12-08 13:25:40,508 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67.9 pTM=0.476 ipTM=0.139 tol=6.77
2024-12-08 13:26:18,449 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=67.8 pTM=0.475 ipTM=0.143 tol=4.48
2024-12-08 13:26:56,405 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.9 pTM=0.469 ipTM=0.14 tol=2.89
2024-12-08 13:27:34,342 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=68 pTM=0.472 ipTM=0.142 tol=4.43
2024-12-08 13:28:12,301 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.9 pTM=0.474 ipTM=0.14 tol=2.76
2024-12-08 13:28:50,254 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.6 pTM=0.471 ipTM=0.143 tol=1.82
2024-12-08 13:29:28,198 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=67.9 pTM=0.474 ipTM=0.14 tol=2.03
2024-12-08 13:30:06,113 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=67.9 pTM=0.474 ipTM=0.142 tol=2.07
2024-12-08 13:30:44,070 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68 pTM=0.473 ipTM=0.14 tol=2.31
2024-12-08 13:31:21,989 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.9 pTM=0.473 ipTM=0.142 tol=2.34
2024-12-08 13:31:59,935 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=67.9 pTM=0.472 ipTM=0.142 tol=1.55
2024-12-08 13:32:37,869 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=68.1 pTM=0.474 ipTM=0.142 tol=1.45
2024-12-08 13:33:15,821 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.1 pTM=0.47 ipTM=0.14 tol=1.75
2024-12-08 13:33:53,729 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=68.1 pTM=0.476 ipTM=0.142 tol=2.22
2024-12-08 13:34:31,681 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67.9 pTM=0.47 ipTM=0.139 tol=2.48
2024-12-08 13:35:09,617 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=68.1 pTM=0.473 ipTM=0.142 tol=2.88
2024-12-08 13:35:47,577 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=68 pTM=0.473 ipTM=0.14 tol=3.45
2024-12-08 13:36:25,516 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=68.1 pTM=0.477 ipTM=0.143 tol=4.25
2024-12-08 13:37:03,477 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=67.9 pTM=0.477 ipTM=0.141 tol=2.95
2024-12-08 13:37:41,414 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=67.8 pTM=0.474 ipTM=0.142 tol=1.92
2024-12-08 13:38:19,369 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=67.8 pTM=0.472 ipTM=0.142 tol=1.32
2024-12-08 13:38:57,304 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=68 pTM=0.475 ipTM=0.142 tol=1.71
2024-12-08 13:39:35,269 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=68.1 pTM=0.475 ipTM=0.142 tol=2.38
2024-12-08 13:40:13,185 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=68.1 pTM=0.477 ipTM=0.142 tol=1.21
2024-12-08 13:40:51,114 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=67.9 pTM=0.474 ipTM=0.141 tol=2
2024-12-08 13:41:29,024 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=68.1 pTM=0.476 ipTM=0.142 tol=2.29
2024-12-08 13:42:06,945 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=68 pTM=0.474 ipTM=0.14 tol=2.27
2024-12-08 13:42:44,851 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=68 pTM=0.476 ipTM=0.143 tol=1.9
2024-12-08 13:42:44,852 alphafold2_multimer_v3_model_3_seed_000 took 1176.0s (30 recycles)
2024-12-08 13:43:23,563 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=65.5 pTM=0.493 ipTM=0.217
2024-12-08 13:44:01,451 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.2 pTM=0.474 ipTM=0.156 tol=10.5
2024-12-08 13:44:39,301 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=66.6 pTM=0.483 ipTM=0.162 tol=11.1
2024-12-08 13:45:17,168 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66.6 pTM=0.48 ipTM=0.159 tol=6.63
2024-12-08 13:45:55,028 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=66.1 pTM=0.477 ipTM=0.154 tol=3.99
2024-12-08 13:46:32,869 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=66.4 pTM=0.479 ipTM=0.156 tol=3.3
2024-12-08 13:47:10,709 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.3 pTM=0.482 ipTM=0.153 tol=2.57
2024-12-08 13:47:48,540 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=65.9 pTM=0.482 ipTM=0.153 tol=1.62
2024-12-08 13:48:26,368 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=66.1 pTM=0.481 ipTM=0.16 tol=1.84
2024-12-08 13:49:04,214 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=66.4 pTM=0.486 ipTM=0.163 tol=1.97
2024-12-08 13:49:42,067 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=66.3 pTM=0.483 ipTM=0.157 tol=1.02
2024-12-08 13:50:19,925 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=66.2 pTM=0.48 ipTM=0.153 tol=1.5
2024-12-08 13:50:57,788 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=65.8 pTM=0.479 ipTM=0.155 tol=1.72
2024-12-08 13:51:35,619 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=66.3 pTM=0.484 ipTM=0.16 tol=1.93
2024-12-08 13:52:13,456 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=66.2 pTM=0.481 ipTM=0.154 tol=1.88
2024-12-08 13:52:51,290 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=66.7 pTM=0.484 ipTM=0.153 tol=1.18
2024-12-08 13:53:29,132 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=66.9 pTM=0.485 ipTM=0.155 tol=1.13
2024-12-08 13:54:06,961 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=66.5 pTM=0.481 ipTM=0.157 tol=2.93
2024-12-08 13:54:44,791 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=66.2 pTM=0.482 ipTM=0.159 tol=1.99
2024-12-08 13:55:22,637 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=66.8 pTM=0.484 ipTM=0.155 tol=1.16
2024-12-08 13:56:00,464 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=66.4 pTM=0.484 ipTM=0.157 tol=2.74
2024-12-08 13:56:38,322 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=66 pTM=0.48 ipTM=0.154 tol=2.79
2024-12-08 13:57:16,180 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=66.2 pTM=0.482 ipTM=0.155 tol=1.71
2024-12-08 13:57:54,021 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=66.2 pTM=0.481 ipTM=0.157 tol=1.4
2024-12-08 13:58:31,894 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=66.4 pTM=0.483 ipTM=0.155 tol=1.41
2024-12-08 13:59:09,751 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=66.5 pTM=0.482 ipTM=0.153 tol=2
2024-12-08 13:59:47,636 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=66.4 pTM=0.484 ipTM=0.151 tol=1.59
2024-12-08 14:00:25,490 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=66.7 pTM=0.487 ipTM=0.153 tol=1.55
2024-12-08 14:01:03,328 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=66.5 pTM=0.485 ipTM=0.154 tol=2.22
2024-12-08 14:01:41,182 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=66.3 pTM=0.481 ipTM=0.153 tol=1.86
2024-12-08 14:02:19,035 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=66.4 pTM=0.482 ipTM=0.155 tol=2.14
2024-12-08 14:02:19,036 alphafold2_multimer_v3_model_4_seed_000 took 1173.2s (30 recycles)
2024-12-08 14:02:57,762 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=66.1 pTM=0.491 ipTM=0.186
2024-12-08 14:03:35,558 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=65.2 pTM=0.47 ipTM=0.16 tol=5.44
2024-12-08 14:04:13,404 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66.1 pTM=0.473 ipTM=0.156 tol=4.1
2024-12-08 14:04:51,291 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.8 pTM=0.479 ipTM=0.156 tol=2.33
2024-12-08 14:05:29,201 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=66.4 pTM=0.472 ipTM=0.154 tol=3.13
2024-12-08 14:06:07,123 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=66.7 pTM=0.474 ipTM=0.151 tol=4.36
2024-12-08 14:06:45,046 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=67 pTM=0.477 ipTM=0.149 tol=4.04
2024-12-08 14:07:22,957 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=67 pTM=0.477 ipTM=0.15 tol=3.02
2024-12-08 14:08:00,875 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.7 pTM=0.47 ipTM=0.149 tol=3.32
2024-12-08 14:08:38,789 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=67.2 pTM=0.476 ipTM=0.149 tol=3.21
2024-12-08 14:09:16,691 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=67.2 pTM=0.475 ipTM=0.152 tol=2.76
2024-12-08 14:09:54,579 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=67.2 pTM=0.477 ipTM=0.154 tol=2.4
2024-12-08 14:10:32,455 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=67.1 pTM=0.477 ipTM=0.152 tol=2.31
2024-12-08 14:11:10,331 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=67.2 pTM=0.479 ipTM=0.156 tol=3.53
2024-12-08 14:11:48,200 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=67.3 pTM=0.477 ipTM=0.152 tol=2.69
2024-12-08 14:12:26,059 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=67.2 pTM=0.474 ipTM=0.151 tol=2.44
2024-12-08 14:13:03,906 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=67.1 pTM=0.475 ipTM=0.153 tol=3.1
2024-12-08 14:13:41,775 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=67.1 pTM=0.474 ipTM=0.149 tol=3.32
2024-12-08 14:14:19,661 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=67.4 pTM=0.473 ipTM=0.149 tol=4.43
2024-12-08 14:14:57,535 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=67.3 pTM=0.475 ipTM=0.151 tol=4.99
2024-12-08 14:15:35,431 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=67.3 pTM=0.473 ipTM=0.151 tol=2.93
2024-12-08 14:16:13,318 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=66.8 pTM=0.471 ipTM=0.15 tol=3.2
2024-12-08 14:16:51,211 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=67.1 pTM=0.471 ipTM=0.154 tol=2.81
2024-12-08 14:17:29,054 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66.9 pTM=0.47 ipTM=0.153 tol=5.64
2024-12-08 14:18:06,916 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=67.4 pTM=0.474 ipTM=0.155 tol=3.46
2024-12-08 14:18:44,785 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=67.2 pTM=0.475 ipTM=0.151 tol=3.27
2024-12-08 14:19:22,660 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=67.4 pTM=0.475 ipTM=0.154 tol=3.03
2024-12-08 14:20:00,540 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=67.3 pTM=0.477 ipTM=0.15 tol=2.31
2024-12-08 14:20:38,422 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=67.6 pTM=0.474 ipTM=0.155 tol=4.28
2024-12-08 14:21:16,307 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=67.2 pTM=0.474 ipTM=0.151 tol=3.12
2024-12-08 14:21:54,192 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=67.4 pTM=0.475 ipTM=0.155 tol=3.72
2024-12-08 14:21:54,193 alphafold2_multimer_v3_model_5_seed_000 took 1174.2s (30 recycles)
2024-12-08 14:21:55,150 reranking models by 'multimer' metric
2024-12-08 14:21:58,925 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 14:24:32,353 Relaxation took 157.2s
2024-12-08 14:24:32,353 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67.4 pTM=0.474 ipTM=0.219
2024-12-08 14:26:54,175 Relaxation took 141.8s
2024-12-08 14:26:54,175 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=66.4 pTM=0.482 ipTM=0.155
2024-12-08 14:34:02,495 Relaxation took 428.3s
2024-12-08 14:34:02,495 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=67.4 pTM=0.475 ipTM=0.155
2024-12-08 14:35:38,675 Relaxation took 96.2s
2024-12-08 14:35:38,675 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=65.4 pTM=0.444 ipTM=0.152
2024-12-08 14:37:52,618 Relaxation took 133.9s
2024-12-08 14:37:52,619 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=68 pTM=0.476 ipTM=0.143
2024-12-08 14:37:55,266 Done