2024-12-08 13:20:08,700 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 13:20:09,006 Running on GPU
2024-12-08 13:20:12,594 Found 6 citations for tools or databases
2024-12-08 13:20:12,595 Query 1/1: SKP2_STK3 (length 915)
2024-12-08 13:20:12,900 Sleeping for 7s. Reason: PENDING
2024-12-08 13:20:20,157 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:20:27,409 Sleeping for 10s. Reason: RUNNING
2024-12-08 13:20:37,670 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:20:43,926 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:20:52,181 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:20:59,436 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:21:07,689 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:21:14,942 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:21:23,199 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:21:31,457 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:21:39,711 Sleeping for 5s. Reason: RUNNING
2024-12-08 13:21:44,965 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:21:51,223 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:22:00,481 Sleeping for 10s. Reason: RUNNING
2024-12-08 13:22:10,737 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:22:16,994 Sleeping for 5s. Reason: RUNNING
2024-12-08 13:22:22,251 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:22:29,511 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:22:36,768 Sleeping for 10s. Reason: RUNNING
2024-12-08 13:22:47,024 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:22:55,278 Sleeping for 5s. Reason: RUNNING
2024-12-08 13:23:00,533 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:23:07,794 Sleeping for 10s. Reason: RUNNING
2024-12-08 13:23:18,052 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:23:26,306 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:23:32,562 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:23:41,823 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:23:52,295 Sleeping for 8s. Reason: PENDING
2024-12-08 13:24:00,555 Sleeping for 5s. Reason: RUNNING
2024-12-08 13:24:05,815 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:24:15,077 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:24:24,341 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:24:32,594 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:24:38,858 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:24:47,114 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:24:56,377 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:25:05,637 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:25:14,895 Sleeping for 5s. Reason: RUNNING
2024-12-08 13:25:20,163 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:25:26,427 Sleeping for 6s. Reason: RUNNING
2024-12-08 13:25:32,681 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:25:41,945 Sleeping for 7s. Reason: RUNNING
2024-12-08 13:25:49,200 Sleeping for 5s. Reason: RUNNING
2024-12-08 13:25:54,456 Sleeping for 8s. Reason: RUNNING
2024-12-08 13:26:02,710 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:26:11,969 Sleeping for 9s. Reason: RUNNING
2024-12-08 13:26:25,827 Setting max_seq=508, max_extra_seq=2048
2024-12-08 13:29:17,907 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=66.2 pTM=0.436 ipTM=0.214
2024-12-08 13:29:35,674 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=66.1 pTM=0.451 ipTM=0.184 tol=7.21
2024-12-08 13:29:53,493 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=66.8 pTM=0.46 ipTM=0.201 tol=5.76
2024-12-08 13:30:11,380 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=66.8 pTM=0.455 ipTM=0.19 tol=4.31
2024-12-08 13:30:29,295 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=66.9 pTM=0.455 ipTM=0.192 tol=2.26
2024-12-08 13:30:47,249 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=67.3 pTM=0.46 ipTM=0.197 tol=2.54
2024-12-08 13:31:05,225 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=67.2 pTM=0.465 ipTM=0.206 tol=2.76
2024-12-08 13:31:23,224 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=67.2 pTM=0.468 ipTM=0.208 tol=1.56
2024-12-08 13:31:41,243 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=67.3 pTM=0.466 ipTM=0.208 tol=2.57
2024-12-08 13:31:59,273 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=67.2 pTM=0.466 ipTM=0.206 tol=2.33
2024-12-08 13:32:17,292 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=67.3 pTM=0.465 ipTM=0.206 tol=2.89
2024-12-08 13:32:35,327 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=67.3 pTM=0.467 ipTM=0.207 tol=2.09
2024-12-08 13:32:53,360 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=67.2 pTM=0.466 ipTM=0.208 tol=3.39
2024-12-08 13:33:11,401 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=67.4 pTM=0.469 ipTM=0.209 tol=1.94
2024-12-08 13:33:29,444 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=67.5 pTM=0.47 ipTM=0.216 tol=2.97
2024-12-08 13:33:47,490 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=67.6 pTM=0.472 ipTM=0.218 tol=2.9
2024-12-08 13:34:05,532 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=67.5 pTM=0.469 ipTM=0.217 tol=2.96
2024-12-08 13:34:23,588 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=67.3 pTM=0.469 ipTM=0.211 tol=2.19
2024-12-08 13:34:41,660 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=67.5 pTM=0.466 ipTM=0.209 tol=1.37
2024-12-08 13:34:59,724 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=67.4 pTM=0.469 ipTM=0.21 tol=2
2024-12-08 13:35:17,766 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=67.2 pTM=0.466 ipTM=0.209 tol=3.44
2024-12-08 13:35:35,825 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=67.2 pTM=0.468 ipTM=0.21 tol=2.69
2024-12-08 13:35:53,885 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=67.4 pTM=0.467 ipTM=0.223 tol=2
2024-12-08 13:36:11,958 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=67.5 pTM=0.468 ipTM=0.209 tol=2.31
2024-12-08 13:36:30,037 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=67.4 pTM=0.466 ipTM=0.208 tol=2.05
2024-12-08 13:36:48,093 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=67.4 pTM=0.469 ipTM=0.212 tol=2.29
2024-12-08 13:37:06,149 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=67.6 pTM=0.466 ipTM=0.208 tol=1.82
2024-12-08 13:37:24,217 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=67.2 pTM=0.47 ipTM=0.213 tol=2.2
2024-12-08 13:37:42,284 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=67.3 pTM=0.464 ipTM=0.206 tol=1.68
2024-12-08 13:38:00,340 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=67.1 pTM=0.465 ipTM=0.206 tol=1.46
2024-12-08 13:38:18,414 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=67.4 pTM=0.466 ipTM=0.208 tol=2.15
2024-12-08 13:38:18,415 alphafold2_multimer_v3_model_1_seed_000 took 707.7s (30 recycles)
2024-12-08 13:38:36,993 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=67.7 pTM=0.479 ipTM=0.228
2024-12-08 13:38:55,081 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=67.9 pTM=0.466 ipTM=0.204 tol=7.12
2024-12-08 13:39:13,157 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=67.6 pTM=0.464 ipTM=0.196 tol=4.43
2024-12-08 13:39:31,220 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=67.8 pTM=0.462 ipTM=0.193 tol=2.39
2024-12-08 13:39:49,288 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=68 pTM=0.464 ipTM=0.2 tol=1.59
2024-12-08 13:40:07,348 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.6 pTM=0.462 ipTM=0.192 tol=4.88
2024-12-08 13:40:25,411 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.8 pTM=0.463 ipTM=0.192 tol=2.25
2024-12-08 13:40:43,479 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=67.7 pTM=0.464 ipTM=0.194 tol=1.93
2024-12-08 13:41:01,539 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=67.9 pTM=0.461 ipTM=0.188 tol=1.26
2024-12-08 13:41:19,612 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=67.8 pTM=0.46 ipTM=0.188 tol=2.56
2024-12-08 13:41:37,713 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=67.8 pTM=0.458 ipTM=0.184 tol=4.69
2024-12-08 13:41:55,803 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=67.7 pTM=0.462 ipTM=0.191 tol=6.93
2024-12-08 13:42:13,888 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=67.5 pTM=0.458 ipTM=0.185 tol=4.97
2024-12-08 13:42:32,011 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=67.4 pTM=0.458 ipTM=0.184 tol=9.33
2024-12-08 13:42:50,119 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=67.9 pTM=0.458 ipTM=0.185 tol=11.3
2024-12-08 13:43:08,218 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=67.8 pTM=0.46 ipTM=0.19 tol=4.28
2024-12-08 13:43:26,317 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=67.7 pTM=0.458 ipTM=0.185 tol=3.24
2024-12-08 13:43:44,442 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=67.9 pTM=0.459 ipTM=0.187 tol=2.41
2024-12-08 13:44:02,554 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=67.6 pTM=0.46 ipTM=0.188 tol=4.35
2024-12-08 13:44:20,646 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=67.6 pTM=0.459 ipTM=0.188 tol=3.64
2024-12-08 13:44:38,731 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=67.7 pTM=0.46 ipTM=0.19 tol=2.16
2024-12-08 13:44:56,820 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=67.6 pTM=0.463 ipTM=0.195 tol=2.06
2024-12-08 13:45:14,910 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=67.9 pTM=0.461 ipTM=0.191 tol=1.89
2024-12-08 13:45:33,011 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=67.9 pTM=0.461 ipTM=0.19 tol=2.54
2024-12-08 13:45:51,096 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=67.7 pTM=0.462 ipTM=0.193 tol=1.94
2024-12-08 13:46:09,200 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=67.9 pTM=0.461 ipTM=0.192 tol=2.56
2024-12-08 13:46:27,285 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=67.9 pTM=0.463 ipTM=0.195 tol=2.06
2024-12-08 13:46:45,382 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=68.1 pTM=0.461 ipTM=0.193 tol=1.89
2024-12-08 13:47:03,478 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=67.7 pTM=0.463 ipTM=0.196 tol=2.12
2024-12-08 13:47:21,583 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=68 pTM=0.458 ipTM=0.186 tol=3.07
2024-12-08 13:47:39,668 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=67.8 pTM=0.461 ipTM=0.193 tol=2.53
2024-12-08 13:47:39,669 alphafold2_multimer_v3_model_2_seed_000 took 560.7s (30 recycles)
2024-12-08 13:47:58,239 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=65.9 pTM=0.427 ipTM=0.159
2024-12-08 13:48:16,306 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=67.4 pTM=0.499 ipTM=0.303 tol=17.8
2024-12-08 13:48:34,355 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.9 pTM=0.464 ipTM=0.212 tol=4.9
2024-12-08 13:48:52,427 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=66.4 pTM=0.453 ipTM=0.182 tol=7.2
2024-12-08 13:49:10,521 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=66.2 pTM=0.451 ipTM=0.183 tol=4.82
2024-12-08 13:49:28,595 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=66.2 pTM=0.447 ipTM=0.188 tol=7.14
2024-12-08 13:49:46,679 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=66.1 pTM=0.461 ipTM=0.193 tol=3.43
2024-12-08 13:50:04,739 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=66.9 pTM=0.483 ipTM=0.293 tol=2.94
2024-12-08 13:50:22,801 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=66.6 pTM=0.456 ipTM=0.209 tol=2.57
2024-12-08 13:50:40,906 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=65.9 pTM=0.446 ipTM=0.181 tol=6.54
2024-12-08 13:50:58,986 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=65.8 pTM=0.449 ipTM=0.172 tol=3.32
2024-12-08 13:51:17,073 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=66.2 pTM=0.455 ipTM=0.209 tol=3.12
2024-12-08 13:51:35,168 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=65.9 pTM=0.452 ipTM=0.177 tol=3.31
2024-12-08 13:51:53,256 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=66.1 pTM=0.452 ipTM=0.221 tol=4.55
2024-12-08 13:52:11,354 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=65.6 pTM=0.449 ipTM=0.172 tol=3.66
2024-12-08 13:52:29,450 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=66.4 pTM=0.452 ipTM=0.204 tol=3.24
2024-12-08 13:52:47,547 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=65.9 pTM=0.451 ipTM=0.176 tol=3.43
2024-12-08 13:53:05,635 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=66.1 pTM=0.452 ipTM=0.195 tol=3.89
2024-12-08 13:53:23,735 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=65.9 pTM=0.448 ipTM=0.169 tol=3.17
2024-12-08 13:53:41,823 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=66.4 pTM=0.453 ipTM=0.218 tol=2.74
2024-12-08 13:53:59,911 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=65.8 pTM=0.447 ipTM=0.182 tol=2.9
2024-12-08 13:54:17,986 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=66.1 pTM=0.451 ipTM=0.217 tol=1.9
2024-12-08 13:54:36,077 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=65.9 pTM=0.45 ipTM=0.174 tol=3.24
2024-12-08 13:54:54,160 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.3 pTM=0.453 ipTM=0.199 tol=3.35
2024-12-08 13:55:12,258 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=65.9 pTM=0.449 ipTM=0.171 tol=2.78
2024-12-08 13:55:30,340 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=66.2 pTM=0.452 ipTM=0.206 tol=3.1
2024-12-08 13:55:48,417 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=66.2 pTM=0.45 ipTM=0.172 tol=2
2024-12-08 13:56:06,485 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.3 pTM=0.451 ipTM=0.221 tol=2.33
2024-12-08 13:56:24,561 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=65.8 pTM=0.446 ipTM=0.175 tol=2.22
2024-12-08 13:56:42,639 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=66.4 pTM=0.453 ipTM=0.195 tol=2.04
2024-12-08 13:57:00,708 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=66.1 pTM=0.451 ipTM=0.176 tol=3.75
2024-12-08 13:57:00,709 alphafold2_multimer_v3_model_3_seed_000 took 560.5s (30 recycles)
2024-12-08 13:57:19,271 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=65.3 pTM=0.472 ipTM=0.224
2024-12-08 13:57:37,319 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.3 pTM=0.493 ipTM=0.271 tol=7.75
2024-12-08 13:57:55,391 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=65.9 pTM=0.467 ipTM=0.209 tol=4.96
2024-12-08 13:58:13,480 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66 pTM=0.459 ipTM=0.194 tol=7.71
2024-12-08 13:58:31,563 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=65.9 pTM=0.462 ipTM=0.196 tol=7.2
2024-12-08 13:58:49,653 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=65.6 pTM=0.461 ipTM=0.193 tol=4.48
2024-12-08 13:59:07,734 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=65.8 pTM=0.462 ipTM=0.196 tol=3.9
2024-12-08 13:59:25,853 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=66 pTM=0.462 ipTM=0.193 tol=4.34
2024-12-08 13:59:43,973 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=65.8 pTM=0.463 ipTM=0.195 tol=5.82
2024-12-08 14:00:02,075 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=65.6 pTM=0.461 ipTM=0.192 tol=4.14
2024-12-08 14:00:20,189 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=66.1 pTM=0.46 ipTM=0.19 tol=4.75
2024-12-08 14:00:38,284 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=65.6 pTM=0.459 ipTM=0.187 tol=4.5
2024-12-08 14:00:56,406 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=66.1 pTM=0.457 ipTM=0.185 tol=4.34
2024-12-08 14:01:14,510 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=65.8 pTM=0.463 ipTM=0.2 tol=5.35
2024-12-08 14:01:32,604 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=66.2 pTM=0.457 ipTM=0.185 tol=8.02
2024-12-08 14:01:50,692 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=65.9 pTM=0.46 ipTM=0.191 tol=3.99
2024-12-08 14:02:08,799 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=66.2 pTM=0.458 ipTM=0.188 tol=5.3
2024-12-08 14:02:26,897 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=66.1 pTM=0.46 ipTM=0.193 tol=5.36
2024-12-08 14:02:44,990 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=66.1 pTM=0.457 ipTM=0.184 tol=6.07
2024-12-08 14:03:03,076 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.8 pTM=0.458 ipTM=0.189 tol=5.02
2024-12-08 14:03:21,153 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=66.1 pTM=0.455 ipTM=0.183 tol=3.04
2024-12-08 14:03:39,232 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=65.7 pTM=0.459 ipTM=0.189 tol=3.43
2024-12-08 14:03:57,299 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=65.8 pTM=0.459 ipTM=0.19 tol=3.39
2024-12-08 14:04:15,362 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=65.7 pTM=0.459 ipTM=0.192 tol=2.83
2024-12-08 14:04:33,453 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=66.2 pTM=0.457 ipTM=0.186 tol=3.9
2024-12-08 14:04:51,549 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=65.8 pTM=0.458 ipTM=0.188 tol=2.79
2024-12-08 14:05:09,635 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=66.2 pTM=0.454 ipTM=0.181 tol=2.6
2024-12-08 14:05:27,718 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=65.8 pTM=0.459 ipTM=0.191 tol=2.64
2024-12-08 14:05:45,788 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65.9 pTM=0.457 ipTM=0.188 tol=3.08
2024-12-08 14:06:03,856 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=65.9 pTM=0.455 ipTM=0.183 tol=3.23
2024-12-08 14:06:21,930 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=66 pTM=0.451 ipTM=0.176 tol=3.07
2024-12-08 14:06:21,931 alphafold2_multimer_v3_model_4_seed_000 took 560.7s (30 recycles)
2024-12-08 14:06:40,484 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.7 pTM=0.494 ipTM=0.321
2024-12-08 14:06:58,517 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.8 pTM=0.505 ipTM=0.334 tol=13.9
2024-12-08 14:07:16,543 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66.6 pTM=0.537 ipTM=0.423 tol=8.51
2024-12-08 14:07:34,609 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.9 pTM=0.495 ipTM=0.311 tol=7.52
2024-12-08 14:07:52,676 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=66.3 pTM=0.49 ipTM=0.286 tol=4.21
2024-12-08 14:08:10,726 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=67.3 pTM=0.523 ipTM=0.369 tol=4.85
2024-12-08 14:08:28,777 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.3 pTM=0.519 ipTM=0.368 tol=4.03
2024-12-08 14:08:46,858 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=67 pTM=0.517 ipTM=0.376 tol=2.49
2024-12-08 14:09:04,939 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.5 pTM=0.483 ipTM=0.264 tol=1.88
2024-12-08 14:09:23,026 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=66.3 pTM=0.49 ipTM=0.246 tol=3.24
2024-12-08 14:09:41,094 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=65.9 pTM=0.479 ipTM=0.245 tol=2.72
2024-12-08 14:09:59,179 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.3 pTM=0.491 ipTM=0.272 tol=3.1
2024-12-08 14:10:17,271 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66.6 pTM=0.469 ipTM=0.218 tol=3.34
2024-12-08 14:10:35,395 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=65.8 pTM=0.472 ipTM=0.207 tol=3.22
2024-12-08 14:10:53,473 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=66.1 pTM=0.491 ipTM=0.288 tol=3.57
2024-12-08 14:11:11,563 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=66.5 pTM=0.458 ipTM=0.191 tol=2.83
2024-12-08 14:11:29,685 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=66.3 pTM=0.467 ipTM=0.201 tol=5.33
2024-12-08 14:11:47,799 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=65.2 pTM=0.461 ipTM=0.191 tol=4.07
2024-12-08 14:12:05,923 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=66.1 pTM=0.466 ipTM=0.2 tol=6.34
2024-12-08 14:12:24,031 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=66.2 pTM=0.466 ipTM=0.203 tol=4.25
2024-12-08 14:12:42,145 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=65.9 pTM=0.47 ipTM=0.212 tol=3.71
2024-12-08 14:13:00,246 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=65.3 pTM=0.463 ipTM=0.199 tol=3.58
2024-12-08 14:13:18,368 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=66.2 pTM=0.469 ipTM=0.21 tol=4.04
2024-12-08 14:13:36,484 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66 pTM=0.461 ipTM=0.195 tol=3.33
2024-12-08 14:13:54,614 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=66.1 pTM=0.47 ipTM=0.21 tol=3.29
2024-12-08 14:14:12,735 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=65.4 pTM=0.463 ipTM=0.199 tol=4.5
2024-12-08 14:14:30,886 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=66.4 pTM=0.469 ipTM=0.209 tol=3.15
2024-12-08 14:14:49,017 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66.1 pTM=0.465 ipTM=0.202 tol=3.8
2024-12-08 14:15:07,126 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.6 pTM=0.463 ipTM=0.197 tol=2.53
2024-12-08 14:15:25,229 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=65.4 pTM=0.459 ipTM=0.191 tol=3.97
2024-12-08 14:15:43,335 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.6 pTM=0.465 ipTM=0.203 tol=2.51
2024-12-08 14:15:43,336 alphafold2_multimer_v3_model_5_seed_000 took 560.9s (30 recycles)
2024-12-08 14:15:43,857 reranking models by 'multimer' metric
2024-12-08 14:15:47,193 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 14:17:24,338 Relaxation took 100.5s
2024-12-08 14:17:24,338 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67.4 pTM=0.466 ipTM=0.208
2024-12-08 14:18:46,812 Relaxation took 82.5s
2024-12-08 14:18:46,812 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.6 pTM=0.465 ipTM=0.203
2024-12-08 14:19:28,427 Relaxation took 41.6s
2024-12-08 14:19:28,427 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=67.8 pTM=0.461 ipTM=0.193
2024-12-08 14:20:39,321 Relaxation took 70.9s
2024-12-08 14:20:39,321 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=66.1 pTM=0.451 ipTM=0.176
2024-12-08 14:21:51,868 Relaxation took 72.5s
2024-12-08 14:21:51,868 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=66 pTM=0.451 ipTM=0.176
2024-12-08 14:21:53,660 Done