2024-12-08 14:20:11,815 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 14:20:12,141 Running on GPU
2024-12-08 14:20:15,999 Found 6 citations for tools or databases
2024-12-08 14:20:15,999 Query 1/1: SPOP_SPOPL (length 766)
2024-12-08 14:20:16,307 Sleeping for 10s. Reason: PENDING
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2024-12-08 14:24:29,278 Setting max_seq=508, max_extra_seq=2048
2024-12-08 14:27:08,530 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.6 pTM=0.562 ipTM=0.554
2024-12-08 14:27:20,208 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.6 pTM=0.536 ipTM=0.516 tol=5.86
2024-12-08 14:27:31,891 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.4 pTM=0.537 ipTM=0.514 tol=2.11
2024-12-08 14:27:43,581 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.9 pTM=0.529 ipTM=0.507 tol=1.08
2024-12-08 14:27:55,288 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.5 pTM=0.534 ipTM=0.517 tol=0.839
2024-12-08 14:28:07,004 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.6 pTM=0.535 ipTM=0.52 tol=0.446
2024-12-08 14:28:07,004 alphafold2_multimer_v3_model_1_seed_000 took 211.0s (5 recycles)
2024-12-08 14:28:19,032 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.2 pTM=0.495 ipTM=0.459
2024-12-08 14:28:30,669 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.2 pTM=0.611 ipTM=0.579 tol=22.4
2024-12-08 14:28:42,300 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.2 pTM=0.587 ipTM=0.551 tol=1.76
2024-12-08 14:28:53,933 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.8 pTM=0.58 ipTM=0.539 tol=0.504
2024-12-08 14:29:05,578 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.3 pTM=0.569 ipTM=0.529 tol=0.549
2024-12-08 14:29:17,218 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.5 pTM=0.575 ipTM=0.533 tol=0.233
2024-12-08 14:29:17,219 alphafold2_multimer_v3_model_2_seed_000 took 69.8s (5 recycles)
2024-12-08 14:29:29,319 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.1 pTM=0.532 ipTM=0.525
2024-12-08 14:29:41,008 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=81.2 pTM=0.624 ipTM=0.606 tol=26.4
2024-12-08 14:29:52,683 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.5 pTM=0.635 ipTM=0.619 tol=2.27
2024-12-08 14:30:04,343 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.6 pTM=0.65 ipTM=0.628 tol=0.513
2024-12-08 14:30:16,010 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.9 pTM=0.666 ipTM=0.645 tol=0.732
2024-12-08 14:30:27,684 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=82.5 pTM=0.678 ipTM=0.662 tol=0.498
2024-12-08 14:30:27,685 alphafold2_multimer_v3_model_3_seed_000 took 70.1s (5 recycles)
2024-12-08 14:30:39,780 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.3 pTM=0.515 ipTM=0.482
2024-12-08 14:30:51,480 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.8 pTM=0.615 ipTM=0.585 tol=21.1
2024-12-08 14:31:03,178 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83.6 pTM=0.688 ipTM=0.671 tol=4.21
2024-12-08 14:31:14,867 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.6 pTM=0.688 ipTM=0.671 tol=0.791
2024-12-08 14:31:26,543 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.4 pTM=0.683 ipTM=0.672 tol=0.502
2024-12-08 14:31:38,250 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.2 pTM=0.695 ipTM=0.687 tol=0.309
2024-12-08 14:31:38,251 alphafold2_multimer_v3_model_4_seed_000 took 70.2s (5 recycles)
2024-12-08 14:31:50,387 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.9 pTM=0.53 ipTM=0.491
2024-12-08 14:32:02,100 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=80.8 pTM=0.638 ipTM=0.606 tol=24.1
2024-12-08 14:32:13,806 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82.3 pTM=0.669 ipTM=0.653 tol=3.44
2024-12-08 14:32:25,519 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=83.2 pTM=0.697 ipTM=0.684 tol=0.718
2024-12-08 14:32:37,229 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=83.1 pTM=0.695 ipTM=0.686 tol=0.261
2024-12-08 14:32:37,230 alphafold2_multimer_v3_model_5_seed_000 took 58.6s (4 recycles)
2024-12-08 14:32:37,604 reranking models by 'multimer' metric
2024-12-08 14:32:38,379 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 14:32:59,197 Relaxation took 21.6s
2024-12-08 14:32:59,197 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.2 pTM=0.695 ipTM=0.687
2024-12-08 14:33:16,844 Relaxation took 17.6s
2024-12-08 14:33:16,844 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=83.1 pTM=0.695 ipTM=0.686
2024-12-08 14:33:35,180 Relaxation took 18.3s
2024-12-08 14:33:35,180 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.5 pTM=0.678 ipTM=0.662
2024-12-08 14:33:55,520 Relaxation took 20.3s
2024-12-08 14:33:55,520 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.5 pTM=0.575 ipTM=0.533
2024-12-08 14:34:22,316 Relaxation took 26.8s
2024-12-08 14:34:22,317 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.6 pTM=0.535 ipTM=0.52
2024-12-08 14:34:23,728 Done