2024-12-08 14:34:51,360 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 14:34:51,663 Running on GPU
2024-12-08 14:34:54,358 Found 6 citations for tools or databases
2024-12-08 14:34:54,358 Query 1/1: SPSB4_ARHGEF2 (length 1259)
2024-12-08 14:34:54,655 Sleeping for 9s. Reason: PENDING
2024-12-08 14:35:03,914 Sleeping for 10s. Reason: PENDING
2024-12-08 14:35:14,173 Sleeping for 10s. Reason: RUNNING
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2024-12-08 14:35:32,694 Sleeping for 6s. Reason: RUNNING
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2024-12-08 14:35:52,466 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:36:00,722 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:36:08,981 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:36:15,235 Sleeping for 5s. Reason: RUNNING
2024-12-08 14:36:20,496 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:36:27,750 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:36:37,015 Sleeping for 5s. Reason: RUNNING
2024-12-08 14:36:42,270 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:36:50,536 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:36:58,796 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:37:08,053 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:37:14,310 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:37:20,572 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:37:26,835 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:37:35,094 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:37:41,355 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:37:47,613 Sleeping for 10s. Reason: RUNNING
2024-12-08 14:37:57,870 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:38:08,742 Sleeping for 6s. Reason: PENDING
2024-12-08 14:38:15,003 Sleeping for 6s. Reason: PENDING
2024-12-08 14:38:21,254 Sleeping for 7s. Reason: PENDING
2024-12-08 14:38:28,517 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:38:36,772 Sleeping for 5s. Reason: RUNNING
2024-12-08 14:38:42,037 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:38:49,296 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:38:58,561 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:39:07,817 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:39:14,070 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:39:20,331 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:39:28,588 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:39:36,841 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:39:44,103 Sleeping for 5s. Reason: RUNNING
2024-12-08 14:39:49,363 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:39:56,627 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:40:04,884 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:40:11,141 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:40:19,400 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:40:29,271 Setting max_seq=508, max_extra_seq=2048
2024-12-08 14:43:45,995 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=56.9 pTM=0.39 ipTM=0.226
2024-12-08 14:44:26,072 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.4 pTM=0.42 ipTM=0.314 tol=16
2024-12-08 14:45:06,377 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.7 pTM=0.44 ipTM=0.385 tol=12.1
2024-12-08 14:45:46,809 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=60.9 pTM=0.452 ipTM=0.405 tol=10.8
2024-12-08 14:46:27,311 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=61.3 pTM=0.473 ipTM=0.512 tol=5.78
2024-12-08 14:47:07,841 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61.8 pTM=0.49 ipTM=0.598 tol=3.54
2024-12-08 14:47:48,398 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=62.3 pTM=0.5 ipTM=0.642 tol=2.75
2024-12-08 14:48:28,943 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=62.1 pTM=0.499 ipTM=0.642 tol=3.49
2024-12-08 14:49:09,523 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=62.1 pTM=0.5 ipTM=0.64 tol=3.29
2024-12-08 14:49:50,106 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=62.3 pTM=0.501 ipTM=0.653 tol=3.29
2024-12-08 14:50:30,707 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=62.6 pTM=0.507 ipTM=0.671 tol=2.88
2024-12-08 14:51:11,324 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.8 pTM=0.513 ipTM=0.692 tol=2.99
2024-12-08 14:51:51,941 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=62.8 pTM=0.516 ipTM=0.705 tol=2.24
2024-12-08 14:52:32,584 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=62.8 pTM=0.517 ipTM=0.713 tol=3.32
2024-12-08 14:53:13,217 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=62.7 pTM=0.516 ipTM=0.704 tol=4.85
2024-12-08 14:53:53,835 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.6 pTM=0.518 ipTM=0.713 tol=2.01
2024-12-08 14:54:34,443 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=62.8 pTM=0.52 ipTM=0.714 tol=2.27
2024-12-08 14:55:15,020 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=62.7 pTM=0.52 ipTM=0.718 tol=2.73
2024-12-08 14:55:55,610 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=62.1 pTM=0.519 ipTM=0.717 tol=6.57
2024-12-08 14:56:36,180 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=62.4 pTM=0.522 ipTM=0.733 tol=4.9
2024-12-08 14:57:16,739 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=63 pTM=0.521 ipTM=0.722 tol=4.69
2024-12-08 14:57:57,334 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=63 pTM=0.522 ipTM=0.728 tol=2.09
2024-12-08 14:58:37,967 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=62.8 pTM=0.523 ipTM=0.733 tol=3.64
2024-12-08 14:59:18,596 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=62.9 pTM=0.525 ipTM=0.735 tol=4.1
2024-12-08 14:59:59,222 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=62.7 pTM=0.522 ipTM=0.732 tol=1.48
2024-12-08 15:00:39,822 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=62.7 pTM=0.522 ipTM=0.729 tol=1.65
2024-12-08 15:01:20,398 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=61.9 pTM=0.522 ipTM=0.728 tol=5.07
2024-12-08 15:02:00,999 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=62.2 pTM=0.521 ipTM=0.721 tol=2.36
2024-12-08 15:02:41,605 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62.8 pTM=0.516 ipTM=0.707 tol=4.71
2024-12-08 15:03:22,221 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=63 pTM=0.519 ipTM=0.708 tol=2.56
2024-12-08 15:04:02,827 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=62.4 pTM=0.516 ipTM=0.703 tol=3.89
2024-12-08 15:04:02,828 alphafold2_multimer_v3_model_1_seed_000 took 1409.3s (30 recycles)
2024-12-08 15:04:44,491 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=58 pTM=0.393 ipTM=0.188
2024-12-08 15:05:25,286 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=59.3 pTM=0.404 ipTM=0.185 tol=16.7
2024-12-08 15:06:06,080 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=60.5 pTM=0.396 ipTM=0.175 tol=9.21
2024-12-08 15:06:46,935 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=61.3 pTM=0.409 ipTM=0.168 tol=7.34
2024-12-08 15:07:27,789 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=61 pTM=0.41 ipTM=0.172 tol=5.29
2024-12-08 15:08:08,659 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.8 pTM=0.411 ipTM=0.16 tol=8.11
2024-12-08 15:08:49,504 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=61 pTM=0.42 ipTM=0.196 tol=7.98
2024-12-08 15:09:30,363 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.8 pTM=0.424 ipTM=0.217 tol=6.44
2024-12-08 15:10:11,265 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=60.9 pTM=0.419 ipTM=0.202 tol=6.2
2024-12-08 15:10:52,124 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.8 pTM=0.42 ipTM=0.226 tol=7.3
2024-12-08 15:11:32,970 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.9 pTM=0.41 ipTM=0.559 tol=9.47
2024-12-08 15:12:13,789 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.8 pTM=0.404 ipTM=0.569 tol=5.95
2024-12-08 15:12:54,620 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=61.1 pTM=0.401 ipTM=0.571 tol=9.72
2024-12-08 15:13:35,469 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=61.1 pTM=0.401 ipTM=0.568 tol=8.93
2024-12-08 15:14:16,329 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.9 pTM=0.404 ipTM=0.592 tol=4.7
2024-12-08 15:14:57,177 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.7 pTM=0.405 ipTM=0.582 tol=6.23
2024-12-08 15:15:38,024 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.9 pTM=0.407 ipTM=0.581 tol=5.41
2024-12-08 15:16:18,862 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=61.1 pTM=0.409 ipTM=0.58 tol=3.78
2024-12-08 15:16:59,672 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.9 pTM=0.406 ipTM=0.581 tol=3.86
2024-12-08 15:17:40,494 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.7 pTM=0.41 ipTM=0.565 tol=6.49
2024-12-08 15:18:21,322 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61 pTM=0.408 ipTM=0.581 tol=3.08
2024-12-08 15:19:02,135 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.7 pTM=0.407 ipTM=0.588 tol=2.19
2024-12-08 15:19:42,963 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.8 pTM=0.408 ipTM=0.587 tol=2.22
2024-12-08 15:20:23,746 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=61.1 pTM=0.408 ipTM=0.593 tol=2.19
2024-12-08 15:21:04,505 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.8 pTM=0.405 ipTM=0.579 tol=2.17
2024-12-08 15:21:45,282 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.9 pTM=0.405 ipTM=0.604 tol=3.22
2024-12-08 15:22:26,064 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61 pTM=0.406 ipTM=0.599 tol=3.6
2024-12-08 15:23:06,877 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.9 pTM=0.406 ipTM=0.61 tol=4.57
2024-12-08 15:23:47,668 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=61.1 pTM=0.407 ipTM=0.588 tol=4.38
2024-12-08 15:24:28,430 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=61.1 pTM=0.406 ipTM=0.603 tol=4.41
2024-12-08 15:25:09,178 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.6 pTM=0.407 ipTM=0.599 tol=3.46
2024-12-08 15:25:09,179 alphafold2_multimer_v3_model_2_seed_000 took 1265.4s (30 recycles)
2024-12-08 15:25:50,919 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=58.4 pTM=0.383 ipTM=0.231
2024-12-08 15:26:31,678 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=59.6 pTM=0.415 ipTM=0.196 tol=13.5
2024-12-08 15:27:12,433 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.9 pTM=0.428 ipTM=0.232 tol=21.3
2024-12-08 15:27:53,185 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60.2 pTM=0.424 ipTM=0.225 tol=10.4
2024-12-08 15:28:33,941 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=59.5 pTM=0.421 ipTM=0.574 tol=11.5
2024-12-08 15:29:14,789 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=59 pTM=0.406 ipTM=0.514 tol=12
2024-12-08 15:29:55,595 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=59.2 pTM=0.408 ipTM=0.597 tol=8.27
2024-12-08 15:30:36,449 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=59.2 pTM=0.4 ipTM=0.569 tol=5.7
2024-12-08 15:31:17,361 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=58.9 pTM=0.398 ipTM=0.604 tol=18
2024-12-08 15:31:58,273 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=58.9 pTM=0.405 ipTM=0.562 tol=14.6
2024-12-08 15:32:39,159 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=59.1 pTM=0.416 ipTM=0.546 tol=18.3
2024-12-08 15:33:20,010 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=59.7 pTM=0.42 ipTM=0.286 tol=13.2
2024-12-08 15:34:00,825 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=58.9 pTM=0.422 ipTM=0.189 tol=20.4
2024-12-08 15:34:41,620 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=59.4 pTM=0.42 ipTM=0.559 tol=12.9
2024-12-08 15:35:22,528 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=59 pTM=0.412 ipTM=0.567 tol=9.05
2024-12-08 15:36:03,306 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=59.4 pTM=0.42 ipTM=0.523 tol=5.28
2024-12-08 15:36:44,072 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=59 pTM=0.418 ipTM=0.55 tol=6.71
2024-12-08 15:37:24,822 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=59.6 pTM=0.424 ipTM=0.552 tol=7.43
2024-12-08 15:38:05,633 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=59.3 pTM=0.417 ipTM=0.573 tol=7.43
2024-12-08 15:38:46,479 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=59.2 pTM=0.412 ipTM=0.579 tol=4.71
2024-12-08 15:39:27,316 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=59.6 pTM=0.417 ipTM=0.594 tol=7.11
2024-12-08 15:40:08,205 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=59.2 pTM=0.415 ipTM=0.536 tol=4.36
2024-12-08 15:40:49,122 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=59.2 pTM=0.411 ipTM=0.597 tol=8.88
2024-12-08 15:41:30,012 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=59 pTM=0.414 ipTM=0.564 tol=9.48
2024-12-08 15:42:10,916 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=59.2 pTM=0.412 ipTM=0.597 tol=5.8
2024-12-08 15:42:51,781 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=59.1 pTM=0.413 ipTM=0.539 tol=7.09
2024-12-08 15:43:32,694 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=59 pTM=0.408 ipTM=0.599 tol=7.65
2024-12-08 15:44:13,563 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=59.1 pTM=0.407 ipTM=0.611 tol=2.79
2024-12-08 15:44:54,446 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=59.3 pTM=0.407 ipTM=0.613 tol=2.89
2024-12-08 15:45:35,360 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=59.2 pTM=0.406 ipTM=0.621 tol=3.4
2024-12-08 15:46:16,301 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=59.3 pTM=0.405 ipTM=0.616 tol=6.6
2024-12-08 15:46:16,302 alphafold2_multimer_v3_model_3_seed_000 took 1266.2s (30 recycles)
2024-12-08 15:46:58,098 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=56.5 pTM=0.394 ipTM=0.211
2024-12-08 15:47:38,904 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.9 pTM=0.422 ipTM=0.312 tol=12.5
2024-12-08 15:48:19,741 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=57.9 pTM=0.423 ipTM=0.276 tol=9.44
2024-12-08 15:49:00,516 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=57.9 pTM=0.429 ipTM=0.292 tol=5.43
2024-12-08 15:49:41,314 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=56.8 pTM=0.436 ipTM=0.321 tol=13.7
2024-12-08 15:50:22,130 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=57.5 pTM=0.432 ipTM=0.291 tol=4.38
2024-12-08 15:51:02,958 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56.7 pTM=0.43 ipTM=0.279 tol=6.15
2024-12-08 15:51:43,783 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=57.3 pTM=0.432 ipTM=0.278 tol=3.08
2024-12-08 15:52:24,661 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=57.5 pTM=0.431 ipTM=0.274 tol=3.23
2024-12-08 15:53:05,501 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=57.4 pTM=0.434 ipTM=0.279 tol=4.64
2024-12-08 15:53:46,319 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=58.1 pTM=0.435 ipTM=0.282 tol=8.65
2024-12-08 15:54:27,120 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=57.4 pTM=0.435 ipTM=0.286 tol=7.57
2024-12-08 15:55:07,934 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=57.5 pTM=0.433 ipTM=0.277 tol=4.61
2024-12-08 15:55:48,738 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=57.7 pTM=0.434 ipTM=0.282 tol=7.78
2024-12-08 15:56:29,559 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=57.7 pTM=0.432 ipTM=0.276 tol=3.69
2024-12-08 15:57:10,353 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=57.8 pTM=0.434 ipTM=0.278 tol=1.98
2024-12-08 15:57:51,168 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=58 pTM=0.437 ipTM=0.283 tol=3.33
2024-12-08 15:58:31,984 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=57.8 pTM=0.434 ipTM=0.271 tol=4.25
2024-12-08 15:59:12,795 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=57.9 pTM=0.436 ipTM=0.286 tol=4.7
2024-12-08 15:59:53,645 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=57.6 pTM=0.431 ipTM=0.279 tol=2.23
2024-12-08 16:00:34,459 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=57.7 pTM=0.434 ipTM=0.286 tol=3.77
2024-12-08 16:01:15,280 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=57.8 pTM=0.434 ipTM=0.277 tol=3.2
2024-12-08 16:01:56,095 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=57.8 pTM=0.437 ipTM=0.298 tol=3.36
2024-12-08 16:02:36,926 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=57.7 pTM=0.434 ipTM=0.272 tol=4.36
2024-12-08 16:03:17,750 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=57.8 pTM=0.435 ipTM=0.29 tol=4.31
2024-12-08 16:03:58,548 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=57.5 pTM=0.432 ipTM=0.272 tol=5.1
2024-12-08 16:04:39,400 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=57.7 pTM=0.435 ipTM=0.285 tol=4.06
2024-12-08 16:05:20,257 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=57.8 pTM=0.435 ipTM=0.281 tol=3.33
2024-12-08 16:06:01,142 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=57.8 pTM=0.435 ipTM=0.288 tol=3.83
2024-12-08 16:06:42,046 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=57.6 pTM=0.434 ipTM=0.277 tol=3.21
2024-12-08 16:07:22,925 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=57.8 pTM=0.435 ipTM=0.284 tol=2.66
2024-12-08 16:07:22,926 alphafold2_multimer_v3_model_4_seed_000 took 1265.7s (30 recycles)
2024-12-08 16:08:04,763 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=57 pTM=0.384 ipTM=0.17
2024-12-08 16:08:45,624 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59.9 pTM=0.412 ipTM=0.177 tol=14.7
2024-12-08 16:09:26,407 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=60.5 pTM=0.422 ipTM=0.195 tol=8.09
2024-12-08 16:10:07,179 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.6 pTM=0.421 ipTM=0.186 tol=5.86
2024-12-08 16:10:47,987 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=60.3 pTM=0.419 ipTM=0.157 tol=2.94
2024-12-08 16:11:28,837 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=60.5 pTM=0.422 ipTM=0.159 tol=1.68
2024-12-08 16:12:09,682 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=60.3 pTM=0.419 ipTM=0.153 tol=2.88
2024-12-08 16:12:50,550 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.2 pTM=0.421 ipTM=0.156 tol=4.07
2024-12-08 16:13:31,468 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.2 pTM=0.42 ipTM=0.156 tol=3.4
2024-12-08 16:14:12,407 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=60.5 pTM=0.425 ipTM=0.161 tol=5.46
2024-12-08 16:14:53,368 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=60.4 pTM=0.424 ipTM=0.158 tol=4.35
2024-12-08 16:15:34,300 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60.7 pTM=0.426 ipTM=0.16 tol=3.42
2024-12-08 16:16:15,230 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=60.5 pTM=0.425 ipTM=0.155 tol=2.99
2024-12-08 16:16:56,129 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=60.5 pTM=0.429 ipTM=0.179 tol=6.61
2024-12-08 16:17:37,063 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=60.4 pTM=0.423 ipTM=0.16 tol=4.54
2024-12-08 16:18:17,923 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=60.6 pTM=0.429 ipTM=0.178 tol=4.49
2024-12-08 16:18:58,776 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=60.6 pTM=0.422 ipTM=0.154 tol=4.55
2024-12-08 16:19:39,615 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=60.3 pTM=0.42 ipTM=0.147 tol=8.2
2024-12-08 16:20:20,437 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=59.9 pTM=0.416 ipTM=0.223 tol=7.12
2024-12-08 16:21:01,273 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=60.1 pTM=0.417 ipTM=0.346 tol=6.55
2024-12-08 16:21:42,131 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=60.2 pTM=0.419 ipTM=0.188 tol=6.15
2024-12-08 16:22:23,014 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=60.1 pTM=0.423 ipTM=0.178 tol=4.06
2024-12-08 16:23:03,949 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=60.1 pTM=0.423 ipTM=0.202 tol=4.64
2024-12-08 16:23:44,851 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=60.1 pTM=0.424 ipTM=0.39 tol=4.44
2024-12-08 16:24:25,754 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=60.1 pTM=0.419 ipTM=0.443 tol=4.79
2024-12-08 16:25:06,647 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=60.2 pTM=0.419 ipTM=0.431 tol=3.7
2024-12-08 16:25:47,538 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=60.1 pTM=0.42 ipTM=0.419 tol=3.67
2024-12-08 16:26:28,386 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=60.2 pTM=0.418 ipTM=0.454 tol=3.13
2024-12-08 16:27:09,244 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=60.3 pTM=0.417 ipTM=0.443 tol=3.62
2024-12-08 16:27:50,123 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=60.3 pTM=0.418 ipTM=0.473 tol=4.32
2024-12-08 16:28:31,002 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=60.3 pTM=0.416 ipTM=0.475 tol=3.41
2024-12-08 16:28:31,003 alphafold2_multimer_v3_model_5_seed_000 took 1267.1s (30 recycles)
2024-12-08 16:28:31,955 reranking models by 'multimer' metric
2024-12-08 16:28:35,575 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 16:30:27,612 Relaxation took 115.7s
2024-12-08 16:30:27,613 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=62.4 pTM=0.516 ipTM=0.703
2024-12-08 16:32:19,791 Relaxation took 112.2s
2024-12-08 16:32:19,792 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=59.3 pTM=0.405 ipTM=0.616
2024-12-08 16:34:52,322 Relaxation took 152.5s
2024-12-08 16:34:52,323 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.6 pTM=0.407 ipTM=0.599
2024-12-08 16:37:53,497 Relaxation took 181.2s
2024-12-08 16:37:53,497 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=60.3 pTM=0.416 ipTM=0.475
2024-12-08 16:39:44,256 Relaxation took 110.8s
2024-12-08 16:39:44,257 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=57.8 pTM=0.435 ipTM=0.284
2024-12-08 16:39:46,646 Done