2024-12-08 14:37:35,194 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 14:37:35,496 Running on GPU
2024-12-08 14:37:37,494 Found 6 citations for tools or databases
2024-12-08 14:37:37,494 Query 1/1: SPSB4_CD9 (length 501)
2024-12-08 14:37:37,783 Sleeping for 9s. Reason: PENDING
2024-12-08 14:37:47,043 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:37:56,300 Sleeping for 9s. Reason: RUNNING
2024-12-08 14:38:05,560 Sleeping for 10s. Reason: RUNNING
2024-12-08 14:38:15,816 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:38:22,071 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:38:30,329 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:38:38,589 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:38:44,849 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:38:52,105 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:38:59,826 Sleeping for 6s. Reason: PENDING
2024-12-08 14:39:06,246 Sleeping for 5s. Reason: RUNNING
2024-12-08 14:39:11,498 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:39:19,753 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:39:26,003 Sleeping for 8s. Reason: RUNNING
2024-12-08 14:39:34,258 Sleeping for 7s. Reason: RUNNING
2024-12-08 14:39:41,517 Sleeping for 5s. Reason: RUNNING
2024-12-08 14:39:46,769 Sleeping for 6s. Reason: RUNNING
2024-12-08 14:39:54,526 Setting max_seq=508, max_extra_seq=2048
2024-12-08 14:42:49,477 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.8 pTM=0.474 ipTM=0.144
2024-12-08 14:42:56,089 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=72.9 pTM=0.489 ipTM=0.169 tol=5.12
2024-12-08 14:43:02,696 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=72.9 pTM=0.485 ipTM=0.171 tol=2.2
2024-12-08 14:43:09,306 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.4 pTM=0.486 ipTM=0.173 tol=1.21
2024-12-08 14:43:15,920 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.6 pTM=0.487 ipTM=0.176 tol=0.317
2024-12-08 14:43:15,921 alphafold2_multimer_v3_model_1_seed_000 took 196.4s (4 recycles)
2024-12-08 14:43:22,715 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.9 pTM=0.464 ipTM=0.116
2024-12-08 14:43:29,336 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.4 pTM=0.463 ipTM=0.117 tol=6.08
2024-12-08 14:43:35,959 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=72.2 pTM=0.463 ipTM=0.118 tol=3.66
2024-12-08 14:43:42,591 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.6 pTM=0.457 ipTM=0.104 tol=5.69
2024-12-08 14:43:49,211 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=72.5 pTM=0.456 ipTM=0.106 tol=4.41
2024-12-08 14:43:55,846 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.8 pTM=0.461 ipTM=0.107 tol=4.41
2024-12-08 14:44:02,468 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.5 pTM=0.46 ipTM=0.112 tol=4.09
2024-12-08 14:44:09,102 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=73.7 pTM=0.461 ipTM=0.11 tol=4.48
2024-12-08 14:44:15,741 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=73.7 pTM=0.461 ipTM=0.109 tol=2.41
2024-12-08 14:44:22,354 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=73.8 pTM=0.458 ipTM=0.107 tol=2.95
2024-12-08 14:44:28,978 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=73.9 pTM=0.459 ipTM=0.108 tol=3.79
2024-12-08 14:44:35,594 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=74.2 pTM=0.462 ipTM=0.109 tol=1.34
2024-12-08 14:44:42,210 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=74 pTM=0.461 ipTM=0.11 tol=0.969
2024-12-08 14:44:48,833 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=73.8 pTM=0.46 ipTM=0.112 tol=0.609
2024-12-08 14:44:55,449 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=73.8 pTM=0.46 ipTM=0.108 tol=0.971
2024-12-08 14:45:02,066 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=74.5 pTM=0.463 ipTM=0.108 tol=0.806
2024-12-08 14:45:08,689 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=74.1 pTM=0.461 ipTM=0.11 tol=0.981
2024-12-08 14:45:15,301 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=74.3 pTM=0.463 ipTM=0.112 tol=1.14
2024-12-08 14:45:21,918 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=73.7 pTM=0.462 ipTM=0.113 tol=1.26
2024-12-08 14:45:28,529 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=73.8 pTM=0.463 ipTM=0.114 tol=0.613
2024-12-08 14:45:35,143 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=73.8 pTM=0.462 ipTM=0.114 tol=0.472
2024-12-08 14:45:35,144 alphafold2_multimer_v3_model_2_seed_000 took 139.0s (20 recycles)
2024-12-08 14:45:41,928 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=71.4 pTM=0.481 ipTM=0.166
2024-12-08 14:45:48,542 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=69.8 pTM=0.479 ipTM=0.157 tol=4.29
2024-12-08 14:45:55,162 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=70.1 pTM=0.471 ipTM=0.139 tol=21.4
2024-12-08 14:46:01,786 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.6 pTM=0.476 ipTM=0.145 tol=4.49
2024-12-08 14:46:08,401 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.8 pTM=0.481 ipTM=0.155 tol=0.951
2024-12-08 14:46:15,025 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=71 pTM=0.487 ipTM=0.167 tol=1.36
2024-12-08 14:46:21,647 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=71.6 pTM=0.488 ipTM=0.167 tol=0.519
2024-12-08 14:46:28,268 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=71.3 pTM=0.49 ipTM=0.17 tol=0.427
2024-12-08 14:46:28,268 alphafold2_multimer_v3_model_3_seed_000 took 53.0s (7 recycles)
2024-12-08 14:46:35,081 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71 pTM=0.459 ipTM=0.116
2024-12-08 14:46:41,723 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=70.5 pTM=0.464 ipTM=0.117 tol=8.71
2024-12-08 14:46:48,361 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=69.8 pTM=0.465 ipTM=0.123 tol=12.5
2024-12-08 14:46:55,003 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=70.1 pTM=0.463 ipTM=0.122 tol=1.61
2024-12-08 14:47:01,630 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.1 pTM=0.465 ipTM=0.123 tol=1.37
2024-12-08 14:47:08,260 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.1 pTM=0.467 ipTM=0.127 tol=1.96
2024-12-08 14:47:14,893 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.1 pTM=0.463 ipTM=0.12 tol=3.2
2024-12-08 14:47:21,516 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70.9 pTM=0.462 ipTM=0.117 tol=2.32
2024-12-08 14:47:28,152 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.1 pTM=0.464 ipTM=0.121 tol=1.22
2024-12-08 14:47:34,778 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=71.4 pTM=0.464 ipTM=0.12 tol=1.95
2024-12-08 14:47:41,410 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=71.7 pTM=0.462 ipTM=0.118 tol=1.07
2024-12-08 14:47:48,036 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=71.4 pTM=0.46 ipTM=0.116 tol=0.402
2024-12-08 14:47:48,036 alphafold2_multimer_v3_model_4_seed_000 took 79.6s (11 recycles)
2024-12-08 14:47:54,833 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.7 pTM=0.48 ipTM=0.16
2024-12-08 14:48:01,455 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=70.1 pTM=0.5 ipTM=0.2 tol=4.82
2024-12-08 14:48:08,075 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=71.1 pTM=0.497 ipTM=0.201 tol=1.4
2024-12-08 14:48:14,697 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=70.9 pTM=0.496 ipTM=0.196 tol=3.48
2024-12-08 14:48:21,323 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.1 pTM=0.494 ipTM=0.19 tol=1.45
2024-12-08 14:48:27,943 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=71.6 pTM=0.499 ipTM=0.201 tol=2.43
2024-12-08 14:48:34,575 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=71.8 pTM=0.495 ipTM=0.188 tol=1.16
2024-12-08 14:48:41,196 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=71.4 pTM=0.5 ipTM=0.2 tol=1.03
2024-12-08 14:48:47,829 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=72 pTM=0.497 ipTM=0.196 tol=3.72
2024-12-08 14:48:54,451 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=71.9 pTM=0.496 ipTM=0.193 tol=2.25
2024-12-08 14:49:01,073 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.2 pTM=0.498 ipTM=0.2 tol=1.93
2024-12-08 14:49:07,697 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=72.1 pTM=0.495 ipTM=0.193 tol=3.05
2024-12-08 14:49:14,318 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.6 pTM=0.499 ipTM=0.201 tol=1.78
2024-12-08 14:49:20,937 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=71.6 pTM=0.492 ipTM=0.188 tol=1.73
2024-12-08 14:49:27,556 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.7 pTM=0.493 ipTM=0.19 tol=3.19
2024-12-08 14:49:34,191 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.7 pTM=0.497 ipTM=0.193 tol=2.3
2024-12-08 14:49:40,825 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=71.8 pTM=0.498 ipTM=0.197 tol=0.829
2024-12-08 14:49:47,454 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=71.5 pTM=0.496 ipTM=0.194 tol=0.803
2024-12-08 14:49:54,074 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=71 pTM=0.493 ipTM=0.188 tol=1.12
2024-12-08 14:50:00,697 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71.8 pTM=0.496 ipTM=0.194 tol=0.651
2024-12-08 14:50:07,312 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=71.4 pTM=0.492 ipTM=0.187 tol=1.15
2024-12-08 14:50:13,945 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.6 pTM=0.493 ipTM=0.191 tol=2.15
2024-12-08 14:50:20,566 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=71.1 pTM=0.494 ipTM=0.191 tol=0.975
2024-12-08 14:50:27,183 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=71.5 pTM=0.494 ipTM=0.19 tol=1.78
2024-12-08 14:50:33,804 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=71.3 pTM=0.497 ipTM=0.194 tol=1.48
2024-12-08 14:50:40,432 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=71.3 pTM=0.493 ipTM=0.188 tol=0.633
2024-12-08 14:50:47,057 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=71.9 pTM=0.499 ipTM=0.199 tol=0.729
2024-12-08 14:50:53,684 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=71.3 pTM=0.491 ipTM=0.183 tol=1.38
2024-12-08 14:51:00,306 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=71.5 pTM=0.498 ipTM=0.198 tol=1.08
2024-12-08 14:51:06,930 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=71.4 pTM=0.495 ipTM=0.191 tol=0.53
2024-12-08 14:51:13,554 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=71.6 pTM=0.497 ipTM=0.196 tol=0.882
2024-12-08 14:51:13,555 alphafold2_multimer_v3_model_5_seed_000 took 205.3s (30 recycles)
2024-12-08 14:51:13,727 reranking models by 'multimer' metric
2024-12-08 14:51:16,690 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 14:51:43,159 Relaxation took 29.4s
2024-12-08 14:51:43,159 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=71.6 pTM=0.497 ipTM=0.196
2024-12-08 14:51:53,327 Relaxation took 10.2s
2024-12-08 14:51:53,327 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=73.6 pTM=0.487 ipTM=0.176
2024-12-08 14:52:10,525 Relaxation took 17.2s
2024-12-08 14:52:10,525 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71.3 pTM=0.49 ipTM=0.17
2024-12-08 14:52:29,532 Relaxation took 19.0s
2024-12-08 14:52:29,532 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.4 pTM=0.46 ipTM=0.116
2024-12-08 14:52:49,096 Relaxation took 19.6s
2024-12-08 14:52:49,096 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=73.8 pTM=0.462 ipTM=0.114
2024-12-08 14:52:50,122 Done