2024-12-08 16:12:58,922 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 16:12:59,282 Running on GPU
2024-12-08 16:13:01,384 Found 6 citations for tools or databases
2024-12-08 16:13:01,384 Query 1/1: STUB1_PLD2 (length 1236)
2024-12-08 16:13:09,028 Setting max_seq=508, max_extra_seq=2048
2024-12-08 16:16:29,510 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.6 pTM=0.721 ipTM=0.172
2024-12-08 16:17:09,334 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79 pTM=0.728 ipTM=0.177 tol=6
2024-12-08 16:17:49,288 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.5 pTM=0.735 ipTM=0.185 tol=3.59
2024-12-08 16:18:29,308 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.1 pTM=0.731 ipTM=0.187 tol=2.19
2024-12-08 16:19:09,374 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.2 pTM=0.731 ipTM=0.188 tol=2.57
2024-12-08 16:19:49,440 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.1 pTM=0.731 ipTM=0.189 tol=1.68
2024-12-08 16:20:29,553 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.2 pTM=0.731 ipTM=0.188 tol=1.24
2024-12-08 16:21:09,665 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.2 pTM=0.728 ipTM=0.18 tol=1.7
2024-12-08 16:21:49,787 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.2 pTM=0.73 ipTM=0.182 tol=1.91
2024-12-08 16:22:29,867 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.1 pTM=0.73 ipTM=0.186 tol=0.598
2024-12-08 16:23:09,957 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=79.2 pTM=0.729 ipTM=0.181 tol=1.76
2024-12-08 16:23:50,066 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=79.2 pTM=0.729 ipTM=0.18 tol=0.933
2024-12-08 16:24:30,168 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=79.4 pTM=0.729 ipTM=0.183 tol=1.49
2024-12-08 16:25:10,289 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=79.2 pTM=0.729 ipTM=0.183 tol=2.13
2024-12-08 16:25:50,372 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=79.8 pTM=0.73 ipTM=0.186 tol=1.77
2024-12-08 16:26:30,500 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=79.1 pTM=0.728 ipTM=0.179 tol=3.53
2024-12-08 16:27:10,616 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=79.4 pTM=0.729 ipTM=0.184 tol=2.22
2024-12-08 16:27:50,742 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=79.6 pTM=0.729 ipTM=0.181 tol=1.71
2024-12-08 16:28:30,849 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=79.2 pTM=0.729 ipTM=0.181 tol=2.29
2024-12-08 16:29:10,965 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=79.1 pTM=0.729 ipTM=0.181 tol=2.18
2024-12-08 16:29:51,065 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=78.9 pTM=0.728 ipTM=0.179 tol=1.59
2024-12-08 16:30:31,179 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=79.2 pTM=0.73 ipTM=0.187 tol=1.24
2024-12-08 16:31:11,291 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=79.1 pTM=0.73 ipTM=0.19 tol=3.53
2024-12-08 16:31:51,393 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=79.5 pTM=0.732 ipTM=0.192 tol=1.62
2024-12-08 16:32:31,505 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=79.2 pTM=0.73 ipTM=0.185 tol=3.4
2024-12-08 16:33:11,616 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=79.4 pTM=0.732 ipTM=0.188 tol=1.46
2024-12-08 16:33:51,723 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=79.1 pTM=0.731 ipTM=0.187 tol=1.3
2024-12-08 16:34:31,831 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=79.2 pTM=0.731 ipTM=0.188 tol=3.69
2024-12-08 16:35:11,920 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=79 pTM=0.73 ipTM=0.191 tol=1.11
2024-12-08 16:35:52,018 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=79.1 pTM=0.731 ipTM=0.186 tol=2.05
2024-12-08 16:36:32,121 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=79.2 pTM=0.732 ipTM=0.187 tol=1.66
2024-12-08 16:36:32,122 alphafold2_multimer_v3_model_1_seed_000 took 1396.5s (30 recycles)
2024-12-08 16:37:13,472 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.1 pTM=0.72 ipTM=0.178
2024-12-08 16:37:53,663 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.4 pTM=0.725 ipTM=0.181 tol=9.59
2024-12-08 16:38:33,824 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.3 pTM=0.726 ipTM=0.178 tol=5
2024-12-08 16:39:13,925 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.9 pTM=0.727 ipTM=0.18 tol=2.03
2024-12-08 16:39:54,027 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.6 pTM=0.728 ipTM=0.182 tol=2.66
2024-12-08 16:40:34,165 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.5 pTM=0.729 ipTM=0.183 tol=1.13
2024-12-08 16:41:14,290 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.6 pTM=0.728 ipTM=0.181 tol=1.31
2024-12-08 16:41:54,418 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.5 pTM=0.727 ipTM=0.179 tol=0.667
2024-12-08 16:42:34,532 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=80.3 pTM=0.727 ipTM=0.177 tol=0.707
2024-12-08 16:43:14,648 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=80.8 pTM=0.727 ipTM=0.181 tol=0.794
2024-12-08 16:43:54,742 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=80.4 pTM=0.725 ipTM=0.177 tol=0.612
2024-12-08 16:44:34,867 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=80.8 pTM=0.727 ipTM=0.179 tol=0.59
2024-12-08 16:45:14,976 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=80.6 pTM=0.726 ipTM=0.178 tol=0.486
2024-12-08 16:45:14,977 alphafold2_multimer_v3_model_2_seed_000 took 521.7s (12 recycles)
2024-12-08 16:45:56,286 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.6 pTM=0.715 ipTM=0.182
2024-12-08 16:46:36,474 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.1 pTM=0.719 ipTM=0.169 tol=8.15
2024-12-08 16:47:16,562 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.6 pTM=0.719 ipTM=0.179 tol=4.78
2024-12-08 16:47:56,611 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.1 pTM=0.715 ipTM=0.172 tol=4.25
2024-12-08 16:48:36,670 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.6 pTM=0.717 ipTM=0.176 tol=0.942
2024-12-08 16:49:16,734 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.2 pTM=0.72 ipTM=0.181 tol=1.78
2024-12-08 16:49:56,816 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.8 pTM=0.721 ipTM=0.179 tol=1.73
2024-12-08 16:50:36,920 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.9 pTM=0.72 ipTM=0.18 tol=0.846
2024-12-08 16:51:17,022 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=81.4 pTM=0.722 ipTM=0.179 tol=0.584
2024-12-08 16:51:57,136 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.1 pTM=0.723 ipTM=0.183 tol=0.815
2024-12-08 16:52:37,243 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=81.3 pTM=0.722 ipTM=0.179 tol=0.839
2024-12-08 16:53:17,356 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.3 pTM=0.723 ipTM=0.179 tol=0.405
2024-12-08 16:53:17,357 alphafold2_multimer_v3_model_3_seed_000 took 481.2s (11 recycles)
2024-12-08 16:53:58,682 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.4 pTM=0.728 ipTM=0.213
2024-12-08 16:54:38,823 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.3 pTM=0.729 ipTM=0.191 tol=4.47
2024-12-08 16:55:18,947 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.73 ipTM=0.199 tol=2.88
2024-12-08 16:55:59,064 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.9 pTM=0.729 ipTM=0.196 tol=3.07
2024-12-08 16:56:39,267 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.8 pTM=0.729 ipTM=0.195 tol=5.43
2024-12-08 16:57:19,370 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.9 pTM=0.729 ipTM=0.193 tol=3.47
2024-12-08 16:57:59,492 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.8 pTM=0.729 ipTM=0.196 tol=2.64
2024-12-08 16:58:39,585 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.6 pTM=0.726 ipTM=0.19 tol=4.48
2024-12-08 16:59:19,685 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.9 pTM=0.729 ipTM=0.195 tol=8.55
2024-12-08 16:59:59,783 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.3 pTM=0.729 ipTM=0.198 tol=11
2024-12-08 17:00:39,851 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.2 pTM=0.727 ipTM=0.19 tol=9.37
2024-12-08 17:01:19,933 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79 pTM=0.729 ipTM=0.193 tol=10.2
2024-12-08 17:01:59,999 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.1 pTM=0.727 ipTM=0.189 tol=9.56
2024-12-08 17:02:40,065 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.4 pTM=0.728 ipTM=0.192 tol=8.23
2024-12-08 17:03:20,201 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77.6 pTM=0.727 ipTM=0.193 tol=10
2024-12-08 17:04:00,250 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.8 pTM=0.727 ipTM=0.19 tol=10.5
2024-12-08 17:04:40,288 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.4 pTM=0.726 ipTM=0.192 tol=11.2
2024-12-08 17:05:20,346 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.3 pTM=0.725 ipTM=0.188 tol=10.6
2024-12-08 17:06:00,397 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77.8 pTM=0.726 ipTM=0.193 tol=4.07
2024-12-08 17:06:40,447 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=77.9 pTM=0.727 ipTM=0.197 tol=4.5
2024-12-08 17:07:20,503 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.9 pTM=0.727 ipTM=0.194 tol=10.8
2024-12-08 17:08:00,578 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=78 pTM=0.727 ipTM=0.196 tol=10.1
2024-12-08 17:08:40,641 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=78.1 pTM=0.726 ipTM=0.191 tol=3.62
2024-12-08 17:09:20,734 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=78.3 pTM=0.726 ipTM=0.193 tol=3.6
2024-12-08 17:10:00,830 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=77.9 pTM=0.727 ipTM=0.194 tol=10.1
2024-12-08 17:10:40,941 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=78.3 pTM=0.726 ipTM=0.193 tol=10.7
2024-12-08 17:11:21,044 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=77.6 pTM=0.726 ipTM=0.196 tol=10.4
2024-12-08 17:12:01,161 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=78.5 pTM=0.726 ipTM=0.189 tol=9.74
2024-12-08 17:12:41,250 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=77.9 pTM=0.725 ipTM=0.189 tol=7.95
2024-12-08 17:13:21,340 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=78.7 pTM=0.725 ipTM=0.189 tol=9.42
2024-12-08 17:14:01,446 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=77.8 pTM=0.726 ipTM=0.188 tol=8.77
2024-12-08 17:14:01,447 alphafold2_multimer_v3_model_4_seed_000 took 1242.9s (30 recycles)
2024-12-08 17:14:42,795 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.8 pTM=0.718 ipTM=0.199
2024-12-08 17:15:23,052 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.8 pTM=0.729 ipTM=0.183 tol=6.18
2024-12-08 17:16:03,266 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.8 pTM=0.732 ipTM=0.196 tol=4.11
2024-12-08 17:16:43,579 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.8 pTM=0.728 ipTM=0.188 tol=3.14
2024-12-08 17:17:24,085 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.5 pTM=0.729 ipTM=0.192 tol=3.87
2024-12-08 17:18:04,574 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.8 pTM=0.731 ipTM=0.194 tol=2.48
2024-12-08 17:18:44,953 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.8 pTM=0.73 ipTM=0.195 tol=1.44
2024-12-08 17:19:25,274 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.8 pTM=0.73 ipTM=0.192 tol=0.923
2024-12-08 17:20:05,524 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.6 pTM=0.729 ipTM=0.19 tol=0.932
2024-12-08 17:20:45,768 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.8 pTM=0.73 ipTM=0.191 tol=1.6
2024-12-08 17:21:25,974 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.8 pTM=0.729 ipTM=0.192 tol=0.752
2024-12-08 17:22:06,194 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.8 pTM=0.729 ipTM=0.189 tol=0.513
2024-12-08 17:22:46,414 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.8 pTM=0.729 ipTM=0.189 tol=0.833
2024-12-08 17:23:26,622 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80.5 pTM=0.729 ipTM=0.189 tol=0.697
2024-12-08 17:24:06,814 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.8 pTM=0.728 ipTM=0.19 tol=1.03
2024-12-08 17:24:47,029 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.4 pTM=0.728 ipTM=0.188 tol=0.968
2024-12-08 17:25:27,251 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=80.5 pTM=0.728 ipTM=0.189 tol=1.07
2024-12-08 17:26:07,461 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80.6 pTM=0.728 ipTM=0.19 tol=0.708
2024-12-08 17:26:47,650 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=80.4 pTM=0.728 ipTM=0.189 tol=1.63
2024-12-08 17:27:27,860 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=80.6 pTM=0.729 ipTM=0.186 tol=1.68
2024-12-08 17:28:08,054 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80.4 pTM=0.729 ipTM=0.189 tol=1.24
2024-12-08 17:28:48,254 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80.3 pTM=0.728 ipTM=0.188 tol=1.58
2024-12-08 17:29:28,449 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=80.2 pTM=0.728 ipTM=0.193 tol=0.855
2024-12-08 17:30:08,651 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=80.5 pTM=0.729 ipTM=0.193 tol=2.36
2024-12-08 17:30:48,894 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=80.6 pTM=0.73 ipTM=0.195 tol=1.27
2024-12-08 17:31:29,136 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=80.5 pTM=0.728 ipTM=0.19 tol=0.974
2024-12-08 17:32:09,366 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=80.4 pTM=0.728 ipTM=0.192 tol=1.31
2024-12-08 17:32:49,607 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=80.4 pTM=0.728 ipTM=0.187 tol=1.36
2024-12-08 17:33:29,828 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=80.2 pTM=0.728 ipTM=0.193 tol=1.73
2024-12-08 17:34:10,055 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=80.5 pTM=0.728 ipTM=0.189 tol=1.01
2024-12-08 17:34:50,261 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=80.5 pTM=0.729 ipTM=0.192 tol=1.1
2024-12-08 17:34:50,262 alphafold2_multimer_v3_model_5_seed_000 took 1247.6s (30 recycles)
2024-12-08 17:34:51,425 reranking models by 'multimer' metric
2024-12-08 17:34:55,053 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 17:36:42,374 Relaxation took 110.9s
2024-12-08 17:36:42,374 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.5 pTM=0.729 ipTM=0.192
2024-12-08 17:39:42,456 Relaxation took 180.1s
2024-12-08 17:39:42,456 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.8 pTM=0.726 ipTM=0.188
2024-12-08 17:41:51,788 Relaxation took 129.3s
2024-12-08 17:41:51,788 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.2 pTM=0.732 ipTM=0.187
2024-12-08 17:44:25,181 Relaxation took 153.4s
2024-12-08 17:44:25,181 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.3 pTM=0.723 ipTM=0.179
2024-12-08 17:46:05,807 Relaxation took 100.6s
2024-12-08 17:46:05,807 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.6 pTM=0.726 ipTM=0.178
2024-12-08 17:46:08,708 Done